Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G818.4 Capsicum annuum HOM05D001045 ORTHO05D001542 2.1e-62 242.3 128 100.0
CAN.G760.9 Capsicum annuum HOM05D001045 ORTHO05D001542 1.5e-44 183.0 144 71.5
CAN.G48.7 Capsicum annuum HOM05D001045 ORTHO05D001542 2.2e-40 169.1 146 66.4
CAN.G177.19 Capsicum annuum HOM05D001045 ORTHO05D001542 3.2e-31 138.7 129 64.3
DCAR_018945 Daucus carota HOM05D001045 ORTHO05D001542 3.2e-31 138.7 151 52.3
Dinv35900 Davidia involucrata HOM05D001045 ORTHO05D001542 3.6e-30 135.2 152 51.3
Solyc11g072190.2 Solanum lycopersicum HOM05D001045 ORTHO05D001542 4.7e-30 134.8 152 55.3
ECA233G3652 Erigeron canadensis HOM05D001045 ORTHO05D001542 6.7e-29 131.0 150 50.7
THA.LOC104816957 Tarenaya hassleriana HOM05D001045 ORTHO05D001542 1.1e-26 123.6 151 49.7
C09p64760 Brassica napus HOM05D001045 ORTHO05D001542 2.4e-26 122.5 149 52.3
Sopen11g029840 Solanum pennellii HOM05D001045 ORTHO05D001542 5.3e-26 121.3 152 52.0
Nitab4.5_0002416g0070 Nicotiana tabacum HOM05D001045 ORTHO05D001542 3.5e-25 118.6 151 50.3
Carub.0006s1062 Capsella rubella HOM05D001045 ORTHO05D001542 5.9e-25 117.9 150 48.0
BraA10t44634Z Brassica rapa HOM05D001045 ORTHO05D001542 7.7e-25 117.5 153 51.0
Lsat_1_v5_gn_1_50000 Lactuca sativa HOM05D001045 ORTHO05D001542 1.0e-24 117.1 181 42.5
Cpa.g.sc34.208 Carica papaya HOM05D001045 ORTHO05D001542 1.3e-24 116.7 151 47.0
HanXRQChr13g0401491 Helianthus annuus HOM05D001045 ORTHO05D001542 3.8e-24 115.2 152 45.4
Aqoxy7G01944 Aquilegia oxysepala HOM05D001045 ORTHO05D001542 5.0e-24 114.8 148 50.0
A10p25690 Brassica napus HOM05D001045 ORTHO05D001542 8.5e-24 114.0 153 49.0
Lalb_Chr17g0347711 Lupinus albus HOM05D001045 ORTHO05D001542 1.5e-23 113.2 148 48.0
A10p20200 Brassica napus HOM05D001045 ORTHO05D001542 1.9e-23 112.8 149 47.7
MD02G1271700 Malus domestica HOM05D001045 ORTHO05D001542 2.5e-23 112.5 149 47.7
CAN.G524.1 Capsicum annuum HOM05D001045 ORTHO05D001542 5.5e-23 111.3 70 85.7
PSO384G2374 Papaver somniferum HOM05D001045 ORTHO05D001542 5.5e-23 111.3 150 43.3
AT5G12110 Arabidopsis thaliana HOM05D001045 ORTHO05D001542 9.4e-23 110.5 154 44.2
Migut.N02399 Erythranthe guttata HOM05D001045 ORTHO05D001542 1.2e-22 110.2 151 43.7
Lalb_Chr15g0080201 Lupinus albus HOM05D001045 ORTHO05D001542 1.2e-22 110.2 148 47.3
Oeu063624.1 Olea europaea HOM05D001045 ORTHO05D001542 1.2e-22 110.2 151 45.0
BolC9t59307H Brassica oleracea HOM05D001045 ORTHO05D001542 2.1e-22 109.4 153 47.1
BcaNung06327 Brassica carinata HOM05D001045 ORTHO05D001542 2.7e-22 109.0 153 47.7
Glyma.13G073200 Glycine max HOM05D001045 ORTHO05D001542 2.7e-22 109.0 150 46.0
Lsat_1_v5_gn_6_26180 Lactuca sativa HOM05D001045 ORTHO05D001542 3.6e-22 108.6 154 43.5
Sp6g24890 Schrenkiella parvula HOM05D001045 ORTHO05D001542 3.6e-22 108.6 146 47.9
Actinidia22481 Actinidia chinensis HOM05D001045 ORTHO05D001542 8.0e-22 107.5 151 45.7
BcaC04g24212 Brassica carinata HOM05D001045 ORTHO05D001542 8.0e-22 107.5 147 46.9
C09p56790 Brassica napus HOM05D001045 ORTHO05D001542 8.0e-22 107.5 147 46.9
CARHR193390 Cardamine hirsuta HOM05D001045 ORTHO05D001542 8.0e-22 107.5 149 47.0
PSO339G1070 Papaver somniferum HOM05D001045 ORTHO05D001542 8.0e-22 107.5 150 42.7
Nitab4.5_0002567g0110 Nicotiana tabacum HOM05D001045 ORTHO05D001542 1.8e-21 106.3 125 52.8
Psat0s1231g0040 Pisum sativum HOM05D001045 ORTHO05D001542 1.8e-21 106.3 150 44.7
MSTRG.17647 Avicennia marina HOM05D001045 ORTHO05D001542 2.3e-21 105.9 151 43.7
Hma1.2p1_1711F.1_g298700 Hydrangea macrophylla HOM05D001045 ORTHO05D001542 2.3e-21 105.9 152 42.8
PGSC0003DMG400027388 Solanum tuberosum HOM05D001045 ORTHO05D001542 2.3e-21 105.9 152 47.4
AL6G22890 Arabidopsis lyrata HOM05D001045 ORTHO05D001542 3.0e-21 105.5 157 45.2
Manes.01G176200 Manihot esculenta HOM05D001045 ORTHO05D001542 8.8e-21 104.0 150 47.3
Atru.chr3.2826 Acer truncatum HOM05D001045 ORTHO05D001542 1.1e-20 103.6 148 44.6
Gohir.A05G071900 Gossypium hirsutum HOM05D001045 ORTHO05D001542 1.5e-20 103.2 145 45.5
CAN.G5.32 Capsicum annuum HOM05D001045 ORTHO05D001542 2.0e-20 102.8 116 56.0
Lj6g0023810 Lotus japonicus HOM05D001045 ORTHO05D001542 2.6e-20 102.4 158 41.1
SalBow3G3611 Salvia bowleyana HOM05D001045 ORTHO05D001542 3.3e-20 102.1 146 45.9
CAN.G386.4 Capsicum annuum HOM05D001045 ORTHO05D001542 7.4e-20 100.9 101 57.4
BolC9t58533H Brassica oleracea HOM05D001045 ORTHO05D001542 9.7e-20 100.5 145 45.5
Lalb_Chr04g0249441 Lupinus albus HOM05D001045 ORTHO05D001542 9.7e-20 100.5 150 44.0
Thhalv10014599m.g Eutrema salsugineum HOM05D001045 ORTHO05D001542 1.3e-19 100.1 151 43.7
CAN.G1157.8 Capsicum annuum HOM05D001045 ORTHO05D001542 1.7e-19 99.8 111 54.1
arahy.Tifrunner.gnm1.ann1.E3HYWR Arachis hypogaea HOM05D001045 ORTHO05D001542 2.8e-19 99.0 148 44.6
Medtr5g088660 Medicago truncatula HOM05D001045 ORTHO05D001542 2.8e-19 99.0 149 44.3
Glyma.02G276600 Glycine max HOM05D001045 ORTHO05D001542 3.7e-19 98.6 149 43.6
TAR623G1682 Trochodendron aralioides HOM05D001045 ORTHO05D001542 3.7e-19 98.6 152 44.7
VMungo0647G0939 Vigna mungo HOM05D001045 ORTHO05D001542 3.7e-19 98.6 149 43.6
Gohir.D05G074700 Gossypium hirsutum HOM05D001045 ORTHO05D001542 4.8e-19 98.2 145 44.8
Gorai.009G076000 Gossypium raimondii HOM05D001045 ORTHO05D001542 4.8e-19 98.2 145 44.8
Phvul.006G019800 Phaseolus vulgaris HOM05D001045 ORTHO05D001542 4.8e-19 98.2 149 40.9
Rhsim13G0203400 Rhododendron simsii HOM05D001045 ORTHO05D001542 4.8e-19 98.2 147 44.2
THA.LOC104800475 Tarenaya hassleriana HOM05D001045 ORTHO05D001542 4.8e-19 98.2 152 43.4
BcaB05g23383 Brassica carinata HOM05D001045 ORTHO05D001542 6.3e-19 97.8 151 42.4
Nn7g37064 Nelumbo nucifera HOM05D001045 ORTHO05D001542 8.2e-19 97.4 152 43.4
Eucgr.J00657 Eucalyptus grandis HOM05D001045 ORTHO05D001542 1.1e-18 97.1 147 46.3
Glyma.14G039100 Glycine max HOM05D001045 ORTHO05D001542 1.1e-18 97.1 149 43.6
BraA10t44091Z Brassica rapa HOM05D001045 ORTHO05D001542 1.4e-18 96.7 150 43.3
CAN.G177.18 Capsicum annuum HOM05D001045 ORTHO05D001542 1.4e-18 96.7 91 60.4
Ca_06173_v3 Cicer arietinum L. HOM05D001045 ORTHO05D001542 3.1e-18 95.5 150 41.3
CAN.G1085.5 Capsicum annuum HOM05D001045 ORTHO05D001542 7.0e-18 94.4 152 44.7
CAN.G928.4 Capsicum annuum HOM05D001045 ORTHO05D001542 7.0e-18 94.4 98 57.1
BcaC03g13681 Brassica carinata HOM05D001045 ORTHO05D001542 9.1e-18 94.0 150 42.7
BNapus_Darmor_BZH_scaffold_38p02360 Brassica napus HOM05D001045 ORTHO05D001542 9.1e-18 94.0 150 42.7
Duzib150G0472 Durio zibethinus HOM05D001045 ORTHO05D001542 9.1e-18 94.0 148 42.6
Actinidia12282 Actinidia chinensis HOM05D001045 ORTHO05D001542 1.2e-17 93.6 146 42.5
CANSAT54G1902 Cannabis sativa HOM05D001045 ORTHO05D001542 1.2e-17 93.6 148 42.6
TPR.G16417 Trifolium pratense HOM05D001045 ORTHO05D001542 1.6e-17 93.2 129 46.5
vmacro04090 Vaccinium macrocarpon HOM05D001045 ORTHO05D001542 1.6e-17 93.2 146 43.8
CiPaw.14G107700 Carya illinoinensis HOM05D001045 ORTHO05D001542 2.0e-17 92.8 151 43.0
BcaB01g04858 Brassica carinata HOM05D001045 ORTHO05D001542 2.6e-17 92.4 145 42.8
Carub.0006s1786 Capsella rubella HOM05D001045 ORTHO05D001542 3.5e-17 92.0 147 43.5
Gohir.D13G224400 Gossypium hirsutum HOM05D001045 ORTHO05D001542 5.9e-17 91.3 148 41.9
Gorai.013G255200 Gossypium raimondii HOM05D001045 ORTHO05D001542 5.9e-17 91.3 148 41.9
Phvul.008G204800 Phaseolus vulgaris HOM05D001045 ORTHO05D001542 5.9e-17 91.3 147 40.8
Thecc.09G256800 Theobroma cacao HOM05D001045 ORTHO05D001542 5.9e-17 91.3 147 42.2
BraA03t10268Z Brassica rapa HOM05D001045 ORTHO05D001542 7.7e-17 90.9 155 41.3
HanXRQChr06g0164571 Helianthus annuus HOM05D001045 ORTHO05D001542 1.3e-16 90.1 152 40.1
Nn2g14587 Nelumbo nucifera HOM05D001045 ORTHO05D001542 1.3e-16 90.1 151 39.7
Cfa010155 Carpinus fangiana HOM05D001045 ORTHO05D001542 2.2e-16 89.4 149 41.6
arahy.Tifrunner.gnm1.ann1.SDD8BX Arachis hypogaea HOM05D001045 ORTHO05D001542 2.9e-16 89.0 149 42.3
Potri.009G018600 Populus trichocarpa HOM05D001045 ORTHO05D001542 2.9e-16 89.0 151 41.7
Gohir.A13G220400 Gossypium hirsutum HOM05D001045 ORTHO05D001542 5.0e-16 88.2 148 41.9
TWI75G0894 Tripterygium wilfordii HOM05D001045 ORTHO05D001542 5.0e-16 88.2 150 39.3
TWI79G1542 Tripterygium wilfordii HOM05D001045 ORTHO05D001542 5.0e-16 88.2 151 39.7
Haze_23542 Corylus avellana HOM05D001045 ORTHO05D001542 6.5e-16 87.8 153 41.2
AT5G19510 Arabidopsis thaliana HOM05D001045 ORTHO05D001542 8.5e-16 87.4 150 40.0
A02p05590 Brassica napus HOM05D001045 ORTHO05D001542 8.5e-16 87.4 150 41.3
BraA02t05511Z Brassica rapa HOM05D001045 ORTHO05D001542 8.5e-16 87.4 150 41.3
HPP92_001658 Vanilla planifolia HOM05D001045 ORTHO05D001542 8.5e-16 87.4 154 37.7
GSVIVG01037374001 Vitis vinifera HOM05D001045 ORTHO05D001542 8.5e-16 87.4 152 42.1
A03p09500 Brassica napus HOM05D001045 ORTHO05D001542 1.1e-15 87.0 147 41.5
EL10Ac4g10055 Beta vulgaris HOM05D001045 ORTHO05D001542 1.5e-15 86.7 153 39.2
RcHm_v2.0_Chr4g0419721 Rosa chinensis HOM05D001045 ORTHO05D001542 1.9e-15 86.3 151 42.4
CAN.G283.9 Capsicum annuum HOM05D001045 ORTHO05D001542 2.5e-15 85.9 71 69.0
Prupe.5G005100 Prunus persica HOM05D001045 ORTHO05D001542 3.2e-15 85.5 147 42.9
QL01p020685 Quercus lobata HOM05D001045 ORTHO05D001542 3.2e-15 85.5 148 39.9
BcaC01g00170 Brassica carinata HOM05D001045 ORTHO05D001542 5.5e-15 84.7 153 41.2
CSS0019520 Camellia sinensis var. sinensis HOM05D001045 ORTHO05D001542 9.4e-15 84.0 150 40.7
TAR622G1115 Trochodendron aralioides HOM05D001045 ORTHO05D025724 9.4e-15 84.0 125 44.0
Cc01_g07090 Coffea canephora HOM05D001045 ORTHO05D001542 6.1e-14 81.3 162 35.8
Lj2C827G11 Lonicera japonica HOM05D001045 ORTHO05D001542 6.1e-14 81.3 152 38.8
ATR0782G076 Amborella trichopoda HOM05D001045 ORTHO05D001542 1.0e-13 80.5 151 38.4
AUR62000243 Chenopodium quinoa HOM05D001045 ORTHO05D001542 4.0e-13 78.6 151 37.7
Hund07404 Selenicereus undatus HOM05D001045 ORTHO05D001542 4.0e-13 78.6 152 36.8
Sc09g0001190 Simmondsia chinensis HOM05D001045 ORTHO05D001542 4.0e-13 78.6 152 38.2
ECA248G0174 Erigeron canadensis HOM05D001045 ORTHO05D001542 8.8e-13 77.4 151 37.1
AUR62006589 Chenopodium quinoa HOM05D001045 ORTHO05D001542 1.2e-12 77.0 148 37.8
SGA_v2.0_scaffold79G25549 Striga asiatica HOM05D001045 ORTHO05D001542 1.2e-12 77.0 149 36.2
unitig_22.g6179 Utricularia gibba HOM05D001045 ORTHO05D001542 1.5e-12 76.6 147 38.1
AL6G31020 Arabidopsis lyrata HOM05D001045 ORTHO05D001542 2.0e-12 76.3 154 35.7
Ciclev10016592m.g Citrus clementina HOM05D001045 ORTHO05D001542 2.6e-12 75.9 150 38.7
C03p11080 Brassica napus HOM05D001045 ORTHO05D001542 3.4e-12 75.5 151 35.1
BolC3t13578H Brassica oleracea HOM05D001045 ORTHO05D001542 3.4e-12 75.5 151 35.1
Lsat_1_v5_gn_5_113161 Lactuca sativa HOM05D001045 ORTHO05D001542 5.7e-12 74.7 147 38.1
MD06G1013800 Malus domestica HOM05D001045 ORTHO05D001542 7.5e-12 74.3 144 39.6
Sc16g0010830 Simmondsia chinensis HOM05D001045 ORTHO05D001542 7.5e-12 74.3 152 37.5
BolC2t06959H Brassica oleracea HOM05D001045 ORTHO05D001542 9.8e-12 73.9 157 35.7
MSTRG.12428 Avicennia marina HOM05D001045 ORTHO05D001542 1.7e-11 73.2 160 33.1
BcaB01g05149 Brassica carinata HOM05D001045 ORTHO05D001542 2.2e-11 72.8 57 59.6
CiPaw.06G009100 Carya illinoinensis HOM05D001045 ORTHO05D001542 2.2e-11 72.8 136 41.2
Lsat_1_v5_gn_1_19821 Lactuca sativa HOM05D001045 ORTHO05D001542 2.2e-11 72.8 147 38.1
Sabra16G0133400 Salix brachista HOM05D001045 ORTHO05D001542 2.2e-11 72.8 57 59.6
TAR369G0065 Trochodendron aralioides HOM05D001045 ORTHO05D001542 2.2e-11 72.8 152 36.8
EL10Ac1g02004 Beta vulgaris HOM05D001045 ORTHO05D001542 3.7e-11 72.0 57 61.4
C05p29070 Brassica napus HOM05D001045 ORTHO05D001542 4.8e-11 71.6 123 42.3
Zm00001eb329960 Zea mays HOM05D001045 ORTHO05D001542 6.3e-11 71.2 142 36.6
Aa31LG3G15120 Aethionema arabicum HOM05D001045 ORTHO05D001542 8.3e-11 70.9 152 36.2
A09p36310 Brassica napus HOM05D001045 ORTHO05D001542 8.3e-11 70.9 154 34.4
EL10As12g24007 Beta vulgaris HOM05D001597 ORTHO05D001512 1.1e-10 70.5 78 47.4
CBR_g63129 Chara braunii HOM05D001045 ORTHO05D001542 1.4e-10 70.1 157 33.8
Pp3c10_15140 Physcomitrium patens HOM05D001045 ORTHO05D001542 1.8e-10 69.7 149 34.2
Actinidia08863 Actinidia chinensis HOM05D001045 ORTHO05D004836 3.1e-10 68.9 147 34.7
Potri.001G224700 Populus trichocarpa HOM05D001045 ORTHO05D001542 3.1e-10 68.9 150 34.7
Migut.I00523 Erythranthe guttata HOM05D001045 ORTHO05D001542 9.1e-10 67.4 158 34.8
Eucgr.G01312 Eucalyptus grandis HOM05D001045 ORTHO05D001542 9.1e-10 67.4 61 65.6
Lsat_1_v5_gn_4_76880 Lactuca sativa HOM05D001045 ORTHO05D001542 1.2e-09 67.0 148 36.5
Lsat_1_v5_gn_8_114001 Lactuca sativa HOM05D001045 ORTHO05D001542 1.6e-09 66.6 143 35.7
Nitab4.5_0002467g0130 Nicotiana tabacum HOM05D001045 ORTHO05D001542 2.7e-09 65.9 130 40.0
Aqoxy7G02433 Aquilegia oxysepala HOM05D001045 ORTHO05D001542 5.9e-09 64.7 50 72.0
MD02G1099500 Malus domestica HOM05D001045 ORTHO05D001542 7.7e-09 64.3 116 37.9
MELO3C020023.2 Cucumis melo HOM05D001045 ORTHO05D001542 1.0e-08 63.9 145 35.2
FvH4_4g13950 Fragaria vesca HOM05D001045 ORTHO05D001542 1.0e-08 63.9 150 34.7
FAN07G1107 Fragaria x ananassa HOM05D001045 ORTHO05D001542 1.0e-08 63.9 149 34.2
FAN17G1276 Fragaria x ananassa HOM05D001045 ORTHO05D001542 1.0e-08 63.9 149 34.2
FAN22G2283 Fragaria x ananassa HOM05D001045 ORTHO05D001542 1.0e-08 63.9 150 34.7
MBI13_g36812_MAGBIO Magnolia biondii HOM05D001045 ORTHO05D001542 1.7e-08 63.2 150 35.3
SEGI_00500 Sequoiadendron giganteum HOM05D001045 ORTHO05D001542 2.2e-08 62.8 150 34.0
FAN12G1132 Fragaria x ananassa HOM05D001045 ORTHO05D001542 3.8e-08 62.0 150 34.0
Ah.06g195010 Amaranthus hybridus HOM05D001045 ORTHO05D001542 5.0e-08 61.6 153 32.7
Duzib168G0638 Durio zibethinus HOM05D001045 ORTHO05D001542 1.1e-07 60.5 64 53.1
PGR119G1342 Punica granatum HOM05D001045 ORTHO05D001542 1.1e-07 60.5 147 33.3
Oeu014209.1 Olea europaea HOM05D000159 ORTHO05D036962 3.2e-07 58.9 57 56.1
Nitab4.5_0005994g0070 Nicotiana tabacum HOM05D001045 ORTHO05D001542 4.2e-07 58.5 136 33.8
Os03g0406200 Oryza sativa ssp. japonica HOM05D001045 ORTHO05D001542 5.5e-07 58.2 152 30.3
DCAR_026222 Daucus carota HOM05D001045 ORTHO05D001542 2.1e-06 56.2 124 33.1
Sp1g26060 Schrenkiella parvula HOM05D001045 ORTHO05D001542 2.7e-06 55.8 152 32.2
PSO017G3186 Papaver somniferum HOM05D001045 ORTHO05D001542 3.6e-06 55.5 157 29.9
Haze_07212 Corylus avellana HOM05D001045 ORTHO05D001542 4.7e-06 55.1 112 37.5
CsaV3_1G009580 Cucumis sativus L. HOM05D001045 ORTHO05D001542 6.1e-06 54.7 152 31.6
ECA247G4010 Erigeron canadensis HOM05D001045 ORTHO05D001542 6.1e-06 54.7 154 31.2
HanXRQChr09g0273081 Helianthus annuus HOM05D001045 ORTHO05D001542 6.1e-06 54.7 147 32.0
unitig_8.g2986 Utricularia gibba HOM05D001598 ORTHO05D007192 6.1e-06 54.7 122 37.7


User provided reference genes

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