Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G809.38 Capsicum annuum HOM05D005111 ORTHO05D006650 1.6e-100 369.4 184 100.0
PGSC0003DMG400007321 Solanum tuberosum HOM05D005111 ORTHO05D006650 3.4e-98 361.7 184 97.8
Solyc02g081950.4 Solanum lycopersicum HOM05D005111 ORTHO05D006650 3.7e-97 358.2 184 96.7
Sopen02g026580 Solanum pennellii HOM05D005111 ORTHO05D006650 4.9e-97 357.8 184 96.2
Nitab4.5_0000632g0170 Nicotiana tabacum HOM05D005111 ORTHO05D006650 9.2e-96 353.6 184 95.1
Peaxi162Scf00036g00163 Petunia axillaris HOM05D005111 ORTHO05D006650 1.6e-95 352.8 184 95.7
Nitab4.5_0000844g0360 Nicotiana tabacum HOM05D005111 ORTHO05D006650 3.5e-95 351.7 182 95.6
Nitab4.5_0000389g0080 Nicotiana tabacum HOM05D005111 ORTHO05D006650 3.0e-86 322.0 182 87.4
Dinv35035 Davidia involucrata HOM05D005111 ORTHO05D006650 6.6e-86 320.9 182 86.3
Nitab4.5_0000005g0410 Nicotiana tabacum HOM05D005111 ORTHO05D006650 3.3e-85 318.5 182 86.3
Hma1.2p1_0697F.1_g204930 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 4.3e-85 318.2 182 86.3
Lsat_1_v5_gn_8_69941 Lactuca sativa HOM05D005111 ORTHO05D006650 1.6e-84 316.2 182 85.2
Lj7P412T18 Lonicera japonica HOM05D005111 ORTHO05D006650 2.8e-84 315.5 184 85.3
Oeu047328.1 Olea europaea HOM05D005111 ORTHO05D006650 6.2e-84 314.3 182 84.1
ECA246G3776 Erigeron canadensis HOM05D005111 ORTHO05D006650 8.0e-84 313.9 182 84.6
Actinidia28460 Actinidia chinensis HOM05D005111 ORTHO05D006650 1.4e-83 313.2 182 84.1
Actinidia36066 Actinidia chinensis HOM05D005111 ORTHO05D006650 1.4e-83 313.2 182 84.1
HanXRQChr15g0474461 Helianthus annuus HOM05D005111 ORTHO05D006650 1.8e-83 312.8 180 85.0
GSVIVG01032518001 Vitis vinifera HOM05D005111 ORTHO05D006650 1.8e-83 312.8 182 83.5
Dinv33518 Davidia involucrata HOM05D005111 ORTHO05D006650 5.2e-83 311.2 182 84.6
TWI56G1475 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 8.9e-83 310.5 182 81.9
CSS0013590 Camellia sinensis var. sinensis HOM05D005111 ORTHO05D006650 1.2e-82 310.1 182 83.5
Rhsim08G0056700 Rhododendron simsii HOM05D005111 ORTHO05D006650 7.5e-82 307.4 182 81.9
DCAR_013972 Daucus carota HOM05D005111 ORTHO05D006650 1.7e-81 306.2 184 82.6
Cc07_g02510 Coffea canephora HOM05D005111 ORTHO05D006650 2.2e-81 305.8 185 83.2
TWI36G0044 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 3.7e-81 305.1 182 81.9
Cfa007459 Carpinus fangiana HOM05D005111 ORTHO05D006650 8.3e-81 303.9 182 82.4
CiPaw.04G023100 Carya illinoinensis HOM05D005111 ORTHO05D006650 1.4e-80 303.1 182 82.4
MD17G1038600 Malus domestica HOM05D005111 ORTHO05D006650 5.4e-80 301.2 182 80.2
Manes.15G180000 Manihot esculenta HOM05D005111 ORTHO05D006650 7.1e-80 300.8 182 80.8
Haze_14637 Corylus avellana HOM05D005111 ORTHO05D006650 9.2e-80 300.4 178 83.1
Prupe.3G280400 Prunus persica HOM05D005111 ORTHO05D006650 1.2e-79 300.1 182 80.2
MD09G1037200 Malus domestica HOM05D005111 ORTHO05D006650 2.7e-79 298.9 182 80.2
MSTRG.3306 Avicennia marina HOM05D005111 ORTHO05D006650 4.6e-79 298.1 178 82.0
CiPaw.03G035600 Carya illinoinensis HOM05D005111 ORTHO05D006650 7.8e-79 297.4 182 79.1
RcHm_v2.0_Chr2g0170641 Rosa chinensis HOM05D005111 ORTHO05D006650 1.0e-78 297.0 182 79.7
CANSAT64G0323 Cannabis sativa HOM05D005111 ORTHO05D006650 1.3e-78 296.6 182 78.0
SalBow1G6258 Salvia bowleyana HOM05D005111 ORTHO05D006650 1.3e-78 296.6 177 80.8
Manes.17G124400 Manihot esculenta HOM05D005111 ORTHO05D006650 1.7e-78 296.2 182 78.6
Potri.001G350300 Populus trichocarpa HOM05D005111 ORTHO05D006650 1.7e-78 296.2 179 79.3
Nn3g16957 Nelumbo nucifera HOM05D005111 ORTHO05D006650 5.1e-78 294.7 182 76.9
MSTRG.15504 Avicennia marina HOM05D005111 ORTHO05D006650 8.6e-78 293.9 178 80.3
FAN09G2278 Fragaria x ananassa HOM05D005111 ORTHO05D006650 8.6e-78 293.9 182 78.6
PGR083G2413 Punica granatum HOM05D005111 ORTHO05D006650 1.1e-77 293.5 183 79.8
FAN02G1641 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.5e-77 293.1 182 78.0
FAN05G4920 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.9e-77 292.7 182 78.0
TAR622G0537 Trochodendron aralioides HOM05D005111 ORTHO05D006650 3.3e-77 292.0 182 77.5
Sabra16G0229800 Salix brachista HOM05D005111 ORTHO05D006650 4.3e-77 291.6 179 78.2
ClCG09G018710 Citrullus lanatus HOM05D005111 ORTHO05D006650 5.6e-77 291.2 182 78.0
ClCG09G018770 Citrullus lanatus HOM05D005111 ORTHO05D006650 5.6e-77 291.2 182 78.0
AUR62032092 Chenopodium quinoa HOM05D005111 ORTHO05D006650 9.5e-77 290.4 182 75.3
Gohir.D09G024300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.1e-76 289.3 182 75.8
Gorai.006G028500 Gossypium raimondii HOM05D005111 ORTHO05D006650 2.8e-76 288.9 182 75.3
COL.COLO4_32007 Corchorus olitorius HOM05D005111 ORTHO05D006650 4.7e-76 288.1 182 77.5
Nn4g22869 Nelumbo nucifera HOM05D005111 ORTHO05D006650 4.7e-76 288.1 179 76.5
Sed0001363 Sechium edule HOM05D005111 ORTHO05D006650 4.7e-76 288.1 182 78.0
MELO3C021519.2 Cucumis melo HOM05D005111 ORTHO05D006650 6.2e-76 287.7 182 77.5
CsaV3_5G037360 Cucumis sativus L. HOM05D005111 ORTHO05D006650 6.2e-76 287.7 182 77.5
QL02p077635 Quercus lobata HOM05D005111 ORTHO05D006650 6.2e-76 287.7 182 76.9
TAR374G1688 Trochodendron aralioides HOM05D005111 ORTHO05D006650 6.2e-76 287.7 182 76.9
Atru.chr6.2171 Acer truncatum HOM05D005111 ORTHO05D006650 1.4e-75 286.6 182 76.9
Migut.H00147 Erythranthe guttata HOM05D005111 ORTHO05D006650 1.4e-75 286.6 178 77.5
Gohir.D10G087701 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.3e-75 285.8 182 75.3
Gorai.011G096000 Gossypium raimondii HOM05D005111 ORTHO05D006650 4.0e-75 285.0 182 75.3
Sed0025070 Sechium edule HOM05D005111 ORTHO05D006650 5.2e-75 284.6 182 75.8
Ciclev10016872m.g Citrus clementina HOM05D005111 ORTHO05D006650 1.5e-74 283.1 182 75.8
FvH4_6g50340 Fragaria vesca HOM05D005111 ORTHO05D006650 1.5e-74 283.1 177 78.0
FAN14G5899 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.5e-74 283.1 177 78.0
Gohir.A10G101300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.5e-74 283.1 182 75.8
Hma1.2p1_0967F.1_g242385 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 2.6e-74 282.3 182 74.7
Thecc.04G004900 Theobroma cacao HOM05D005111 ORTHO05D006650 2.6e-74 282.3 182 76.4
Duzib147G1596 Durio zibethinus HOM05D005111 ORTHO05D006650 3.4e-74 282.0 182 74.7
Gohir.D04G053100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 3.4e-74 282.0 184 74.5
Gorai.012G059600 Gossypium raimondii HOM05D005111 ORTHO05D006650 3.4e-74 282.0 184 74.5
Gohir.A05G361100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 4.4e-74 281.6 184 74.5
Duzib264G0177 Durio zibethinus HOM05D005111 ORTHO05D006650 5.8e-74 281.2 182 75.3
Hma1.2p1_2931F.1_g330500 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 5.8e-74 281.2 182 74.2
Ah.16g106920 Amaranthus hybridus HOM05D005111 ORTHO05D006650 7.6e-74 280.8 182 72.5
SGA_v2.0_scaffold205G41716 Striga asiatica HOM05D005111 ORTHO05D006650 9.9e-74 280.4 178 75.8
THA.LOC104823919 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 4.9e-73 278.1 182 75.3
Eucgr.J02178 Eucalyptus grandis HOM05D005111 ORTHO05D006650 8.3e-73 277.3 182 71.4
Potri.017G073800 Populus trichocarpa HOM05D005111 ORTHO05D006650 8.3e-73 277.3 183 75.4
unitig_744.g24353 Utricularia gibba HOM05D005111 ORTHO05D006650 8.3e-73 277.3 179 74.3
EL10Ac2g03364 Beta vulgaris HOM05D005111 ORTHO05D006650 1.9e-72 276.2 178 74.7
SalBow7G0796 Salvia bowleyana HOM05D005111 ORTHO05D006650 1.9e-72 276.2 177 78.0
CDE10G0493 Ceratophyllum demersum HOM05D005111 ORTHO05D006650 4.1e-72 275.0 179 73.2
Aqoxy3G00932 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 9.2e-72 273.9 181 71.8
Aa31LG2G4740 Aethionema arabicum HOM05D005111 ORTHO05D006650 1.6e-71 273.1 182 72.0
SGA_v2.0_scaffold30G12485 Striga asiatica HOM05D005111 ORTHO05D006650 1.6e-71 273.1 178 73.0
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 3.5e-71 271.9 177 73.4
Sp2g17070 Schrenkiella parvula HOM05D005111 ORTHO05D006650 3.5e-71 271.9 182 72.5
AL7G49820 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 1.0e-70 270.4 182 70.9
AT5G40190 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 3.0e-70 268.9 182 70.3
Thhalv10027951m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 3.0e-70 268.9 180 72.2
PSO478G1103 Papaver somniferum HOM05D005111 ORTHO05D006650 5.1e-70 268.1 182 70.9
CiPaw.06G158200 Carya illinoinensis HOM05D005111 ORTHO05D006650 1.5e-69 266.5 182 69.2
SEGI_23218 Sequoiadendron giganteum HOM05D005111 ORTHO05D006650 1.9e-69 266.2 182 67.0
BcaC06g33750 Brassica carinata HOM05D005111 ORTHO05D006650 3.3e-69 265.4 182 69.2
C07p37330 Brassica napus HOM05D005111 ORTHO05D006650 3.3e-69 265.4 182 69.2
BolC7t44243H Brassica oleracea HOM05D005111 ORTHO05D006650 3.3e-69 265.4 182 69.2
Migut.K01364 Erythranthe guttata HOM05D005111 ORTHO05D006650 3.3e-69 265.4 179 71.5
A06p40670 Brassica napus HOM05D005111 ORTHO05D006650 4.3e-69 265.0 182 69.2
BraA06t26987Z Brassica rapa HOM05D005111 ORTHO05D006650 4.3e-69 265.0 182 69.2
Thhalv10005667m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 4.3e-69 265.0 182 70.9
PSO017G5141 Papaver somniferum HOM05D005111 ORTHO05D006650 4.3e-69 265.0 182 70.9
THA.LOC104805409 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 9.6e-69 263.8 179 72.6
Carub.0007s3546 Capsella rubella HOM05D005111 ORTHO05D006650 3.6e-68 261.9 182 69.2
CARHR261950 Cardamine hirsuta HOM05D005111 ORTHO05D006650 4.7e-68 261.5 182 68.7
BcaC06g30932 Brassica carinata HOM05D005111 ORTHO05D006650 1.8e-67 259.6 191 67.5
Phvul.004G019100 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 4.0e-67 258.5 183 68.3
VMungo0464G0112 Vigna mungo HOM05D005111 ORTHO05D006650 5.2e-67 258.1 183 68.3
Sc20g0002810 Simmondsia chinensis HOM05D005111 ORTHO05D006650 6.8e-67 257.7 170 73.5
AL5G17640 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 1.2e-66 256.9 181 69.6
Glyma.19G011900 Glycine max HOM05D005111 ORTHO05D006650 1.5e-66 256.5 185 68.1
arahy.Tifrunner.gnm1.ann1.68QD6J Arachis hypogaea HOM05D005111 ORTHO05D006650 3.4e-66 255.4 180 69.4
Lj2g0005029 Lotus japonicus HOM05D005111 ORTHO05D006650 4.4e-66 255.0 177 66.7
Glyma.19G012000 Glycine max HOM05D005111 ORTHO05D006650 7.6e-66 254.2 182 68.7
VMungo0464G1864 Vigna mungo HOM05D005111 ORTHO05D006650 7.6e-66 254.2 183 67.2
AT3G28140 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 2.2e-65 252.7 183 69.4
Actinidia33968 Actinidia chinensis HOM05D005111 ORTHO05D000390 3.8e-65 251.9 182 68.7
Glyma.13G070800 Glycine max HOM05D005111 ORTHO05D006650 3.8e-65 251.9 180 67.8
Phvul.004G019200 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 4.9e-65 251.5 183 66.7
Aqoxy3G03068 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 1.2e-63 246.9 182 65.4
Carub.0005s0666 Capsella rubella HOM05D005111 ORTHO05D006650 8.7e-62 240.7 177 68.4
Ca_04214_v3 Cicer arietinum L. HOM05D005111 ORTHO05D006650 1.5e-61 240.0 185 64.9
Psat1g060720 Pisum sativum HOM05D005111 ORTHO05D006650 1.5e-61 240.0 177 66.7
TPR.G2260 Trifolium pratense HOM05D005111 ORTHO05D006650 1.5e-61 240.0 178 66.3
Lalb_Chr02g0159721 Lupinus albus HOM05D005111 ORTHO05D006650 9.0e-59 230.7 186 59.7
Sp7g01780 Schrenkiella parvula HOM05D005111 ORTHO05D006650 3.4e-58 228.8 179 65.4
ATR1149G112 Amborella trichopoda HOM05D005111 ORTHO05D006650 2.2e-57 226.1 176 63.1
Medtr6g007773 Medicago truncatula HOM05D005111 ORTHO05D006650 2.5e-53 212.6 179 59.2
BcaC06g30930 Brassica carinata HOM05D005111 ORTHO05D006650 5.3e-51 204.9 182 58.2
Cpa.g.sc286.5 Carica papaya HOM05D005111 ORTHO05D006650 5.8e-50 201.4 163 65.6
Os09g0375400 Oryza sativa ssp. japonica HOM05D005111 ORTHO05D006650 2.1e-44 183.0 184 53.8
Gohir.A09G025000 Gossypium hirsutum HOM05D005111 ORTHO05D006650 4.8e-44 181.8 118 71.2
FAN09G1763 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.2e-39 167.2 115 68.7
Zm00001eb098850 Zea mays HOM05D005111 ORTHO05D006650 1.2e-39 167.2 197 48.2
Ah.07g198430 Amaranthus hybridus HOM05D005111 ORTHO05D003582 7.9e-39 164.5 160 52.5
SMO367G0111 Selaginella moellendorffii HOM05D005111 ORTHO05D006650 1.8e-35 153.3 179 39.1
Actinidia27813 Actinidia chinensis HOM05D005111 ORTHO05D006650 4.3e-29 132.1 112 62.5
Nn8g40738 Nelumbo nucifera HOM05D005111 ORTHO05D006650 6.9e-27 124.8 75 80.0
CARHR149780 Cardamine hirsuta HOM05D005111 ORTHO05D006650 2.1e-23 113.2 99 58.6
Ciclev10033710m.g Citrus clementina HOM05D005111 ORTHO05D152558 2.2e-20 103.2 164 34.1
BcaC03g17502 Brassica carinata HOM05D005111 ORTHO05D039329 9.7e-13 77.8 55 70.9
BraA02t08578Z Brassica rapa HOM05D000028 ORTHO05D000390 4.1e-11 72.4 69 52.2
A02p35780 Brassica napus HOM05D005111 ORTHO05D006650 7.0e-11 71.6 65 53.8
BcaC06g33752 Brassica carinata HOM05D005111 ORTHO05D093848 1.6e-07 60.5 41 68.3


User provided reference genes

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