Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G765.2 Capsicum annuum HOM05D003979 ORTHO05D005530 0.0e+00 1218.0 612 100.0
PGSC0003DMG400019163 Solanum tuberosum HOM05D003979 ORTHO05D005530 0.0e+00 1087.0 625 88.6
Sopen05g032060 Solanum pennellii HOM05D003979 ORTHO05D005530 0.0e+00 1079.7 625 88.3
Solyc05g053540.3 Solanum lycopersicum HOM05D003979 ORTHO05D005530 0.0e+00 1077.4 625 88.3
Peaxi162Scf00073g02029 Petunia axillaris HOM05D003979 ORTHO05D005530 2.1e-311 1071.6 623 87.8
Solyc12g043020.2 Solanum lycopersicum HOM05D003979 ORTHO05D005530 3.5e-309 1064.3 626 86.6
Sopen12g022260 Solanum pennellii HOM05D003979 ORTHO05D005530 1.7e-308 1062.0 632 86.6
Cc03_g07310 Coffea canephora HOM05D003979 ORTHO05D005530 2.2e-303 1045.0 624 83.8
Cc02_g25590 Coffea canephora HOM05D003979 ORTHO05D005530 7.1e-302 1040.0 627 83.1
Nitab4.5_0001769g0010 Nicotiana tabacum HOM05D003979 ORTHO05D005530 2.3e-300 1035.0 627 84.7
Dinv38268 Davidia involucrata HOM05D003979 ORTHO05D005530 8.6e-300 1033.1 627 82.8
Actinidia34623 Actinidia chinensis HOM05D003979 ORTHO05D005530 5.6e-299 1030.4 629 82.2
CSS0027237 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 3.6e-298 1027.7 629 81.6
CSS0040719 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 3.6e-298 1027.7 629 81.6
HanXRQChr14g0435331 Helianthus annuus HOM05D003979 ORTHO05D005530 2.6e-296 1021.5 628 81.8
HanXRQChr02g0059571 Helianthus annuus HOM05D003979 ORTHO05D005530 5.8e-296 1020.4 568 87.9
Hund24848 Selenicereus undatus HOM05D003979 ORTHO05D005530 5.8e-296 1020.4 575 86.3
AUR62020350 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.3e-295 1019.2 623 81.7
MSTRG.24631 Avicennia marina HOM05D003979 ORTHO05D005530 6.4e-295 1016.9 600 83.8
TAR365G0531 Trochodendron aralioides HOM05D003979 ORTHO05D005530 6.4e-295 1016.9 635 81.7
Migut.N00344 Erythranthe guttata HOM05D003979 ORTHO05D005530 1.4e-294 1015.8 623 82.5
Actinidia35951 Actinidia chinensis HOM05D003979 ORTHO05D005530 1.9e-294 1015.4 631 81.3
AUR62015873 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.9e-294 1015.4 599 83.5
Hma1.2p1_0691F.1_g204250 Hydrangea macrophylla HOM05D003979 ORTHO05D005530 9.3e-294 1013.1 631 81.1
Lsat_1_v5_gn_6_63381 Lactuca sativa HOM05D003979 ORTHO05D005530 2.1e-293 1011.9 628 80.6
Cfa014896 Carpinus fangiana HOM05D003979 ORTHO05D005530 9.6e-291 1003.0 612 81.5
EL10Ac4g07703 Beta vulgaris HOM05D003979 ORTHO05D005530 1.3e-290 1002.7 597 82.7
CiPaw.02G067900 Carya illinoinensis HOM05D003979 ORTHO05D005530 1.3e-290 1002.7 626 80.7
Ciclev10004565m.g Citrus clementina HOM05D003979 ORTHO05D005530 3.6e-290 1001.1 625 80.2
Sed0009934 Sechium edule HOM05D003979 ORTHO05D005530 2.4e-289 998.4 629 79.5
Duzib212G0229 Durio zibethinus HOM05D003979 ORTHO05D005530 5.3e-289 997.3 577 84.7
Potri.003G176600 Populus trichocarpa HOM05D003979 ORTHO05D005530 5.3e-289 997.3 614 81.3
MELO3C006331.2 Cucumis melo HOM05D003979 ORTHO05D005530 2.0e-288 995.3 633 78.8
Potri.001G051700 Populus trichocarpa HOM05D003979 ORTHO05D005530 2.0e-288 995.3 620 80.6
Duzib151G0303 Durio zibethinus HOM05D003979 ORTHO05D005530 3.4e-288 994.6 607 80.9
CANSAT78G1204 Cannabis sativa HOM05D003979 ORTHO05D005530 5.8e-288 993.8 612 80.1
ECA233G3228 Erigeron canadensis HOM05D003979 ORTHO05D005530 7.6e-288 993.4 619 80.9
Nn1g03146 Nelumbo nucifera HOM05D003979 ORTHO05D005530 9.9e-288 993.0 636 79.9
ClCG05G003530 Citrullus lanatus HOM05D003979 ORTHO05D005530 1.3e-287 992.6 633 78.2
Sc25g0005860 Simmondsia chinensis HOM05D003979 ORTHO05D005530 2.9e-287 991.5 619 80.9
CiPaw.01G125500 Carya illinoinensis HOM05D003979 ORTHO05D005530 6.4e-287 990.3 603 81.4
Thecc.04G210300 Theobroma cacao HOM05D003979 ORTHO05D005530 6.4e-287 990.3 577 84.1
RhsimUnG0135800 Rhododendron simsii HOM05D003979 ORTHO05D005530 1.1e-286 989.6 639 78.7
COL.COLO4_20310 Corchorus olitorius HOM05D003979 ORTHO05D005530 1.9e-286 988.8 616 80.4
CsaV3_3G011200 Cucumis sativus L. HOM05D003979 ORTHO05D005530 2.4e-286 988.4 629 78.5
DCAR_031519 Daucus carota HOM05D003979 ORTHO05D005530 3.2e-286 988.0 637 79.6
Medtr2g089340 Medicago truncatula HOM05D003979 ORTHO05D005530 4.2e-286 987.6 615 80.0
TAR624G0299 Trochodendron aralioides HOM05D003979 ORTHO05D005530 1.2e-285 986.1 615 81.6
PSO017G0981 Papaver somniferum HOM05D003979 ORTHO05D005530 1.6e-285 985.7 626 79.2
Ah.04g166150 Amaranthus hybridus HOM05D003979 ORTHO05D005530 2.7e-285 984.9 616 80.8
Gohir.D02G031700 Gossypium hirsutum HOM05D003979 ORTHO05D005530 6.0e-285 983.8 615 80.0
Manes.15G050825 Manihot esculenta HOM05D003979 ORTHO05D005530 6.0e-285 983.8 626 78.9
arahy.Tifrunner.gnm1.ann1.ZGF32Z Arachis hypogaea HOM05D003979 ORTHO05D005530 1.0e-284 983.0 618 78.6
PSO063G3024 Papaver somniferum HOM05D003979 ORTHO05D005530 1.7e-284 982.2 633 78.2
Lalb_Chr18g0056121 Lupinus albus HOM05D003979 ORTHO05D005530 3.0e-284 981.5 617 78.6
Prupe.1G003100 Prunus persica HOM05D003979 ORTHO05D005530 3.0e-284 981.5 627 79.1
Sabra01G0036200 Salix brachista HOM05D003979 ORTHO05D005530 3.0e-284 981.5 620 79.7
Ca_00636_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 3.9e-284 981.1 615 79.2
Ca_29705_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 3.9e-284 981.1 615 79.2
Gorai.005G035200 Gossypium raimondii HOM05D003979 ORTHO05D005530 5.1e-284 980.7 615 79.8
Haze_11573 Corylus avellana HOM05D003979 ORTHO05D005530 1.1e-283 979.5 630 77.9
Gohir.A02G024400 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.5e-283 979.2 615 79.8
RcHm_v2.0_Chr1g0328531 Rosa chinensis HOM05D003979 ORTHO05D005530 1.5e-283 979.2 593 81.6
QL07p012465 Quercus lobata HOM05D003979 ORTHO05D005530 1.9e-283 978.8 604 80.0
MD04G1003600 Malus domestica HOM05D003979 ORTHO05D005530 3.3e-283 978.0 638 78.1
Glyma.13G207900 Glycine max HOM05D003979 ORTHO05D005530 1.3e-282 976.1 612 79.1
Peaxi162Scf00536g00915 Petunia axillaris HOM05D003979 ORTHO05D005530 1.6e-282 975.7 621 82.0
AUR62017196 Chenopodium quinoa HOM05D003979 ORTHO05D005530 3.6e-282 974.5 582 81.6
Psat1g182280 Pisum sativum HOM05D003979 ORTHO05D005530 4.8e-282 974.2 612 78.6
Lj6g0025731 Lotus japonicus HOM05D003979 ORTHO05D005530 1.8e-281 972.2 601 79.2
Oeu022336.1 Olea europaea HOM05D003979 ORTHO05D005530 1.8e-281 972.2 641 77.7
Aqoxy2G03779 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 2.4e-281 971.8 566 84.6
Duzib268G0146 Durio zibethinus HOM05D003979 ORTHO05D005530 2.4e-281 971.8 615 79.2
THA.LOC104804817 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 3.1e-281 971.5 566 84.3
PGR031G0232 Punica granatum HOM05D003979 ORTHO05D005530 4.0e-281 971.1 623 78.5
Phvul.006G152700 Phaseolus vulgaris HOM05D003979 ORTHO05D005530 6.9e-281 970.3 612 78.3
CARHR100330 Cardamine hirsuta HOM05D003979 ORTHO05D005530 9.0e-281 969.9 614 79.5
VMungo0540G1831 Vigna mungo HOM05D003979 ORTHO05D005530 1.5e-280 969.1 612 78.4
RhsimUnG0180900 Rhododendron simsii HOM05D003979 ORTHO05D005530 2.6e-280 968.4 683 73.6
Zm00001eb175970 Zea mays HOM05D003979 ORTHO05D005530 2.6e-280 968.4 573 83.2
FAN10G0585 Fragaria x ananassa HOM05D003979 ORTHO05D005530 5.8e-280 967.2 620 78.4
FAN01G2046 Fragaria x ananassa HOM05D003979 ORTHO05D005530 7.6e-280 966.8 614 78.3
Zm00001eb039310 Zea mays HOM05D003979 ORTHO05D005530 7.6e-280 966.8 596 80.9
Carub.0003s2458 Capsella rubella HOM05D003979 ORTHO05D005530 9.9e-280 966.5 618 78.6
AT3G23940 Arabidopsis thaliana HOM05D003979 ORTHO05D005530 2.2e-279 965.3 622 78.9
Aqoxy5G02610 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 4.9e-279 964.1 566 84.1
Nitab4.5_0001066g0080 Nicotiana tabacum HOM05D003979 ORTHO05D005530 4.9e-279 964.1 635 79.7
THA.LOC104808724 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 4.9e-279 964.1 605 79.3
BcaB04g20393 Brassica carinata HOM05D003979 ORTHO05D005530 8.4e-279 963.4 572 83.0
FvH4_7g04190 Fragaria vesca HOM05D003979 ORTHO05D005530 1.1e-278 963.0 621 78.1
FAN06G4745 Fragaria x ananassa HOM05D003979 ORTHO05D005530 1.4e-278 962.6 615 78.2
AL3G39610 Arabidopsis lyrata HOM05D003979 ORTHO05D005530 7.1e-278 960.3 621 78.1
A07p08130 Brassica napus HOM05D003979 ORTHO05D005530 1.2e-277 959.5 624 77.7
BraA07t28596Z Brassica rapa HOM05D003979 ORTHO05D005530 1.2e-277 959.5 624 77.7
Os08g0559600 Oryza sativa ssp. japonica HOM05D003979 ORTHO05D005530 1.6e-277 959.1 613 78.5
BcaC06g35668 Brassica carinata HOM05D003979 ORTHO05D005530 2.1e-277 958.7 624 77.9
C07p12270 Brassica napus HOM05D003979 ORTHO05D005530 2.1e-277 958.7 624 77.9
BcaB06g26604 Brassica carinata HOM05D003979 ORTHO05D005530 4.6e-277 957.6 621 77.9
Cpa.g.sc59.101 Carica papaya HOM05D003979 ORTHO05D005530 4.6e-277 957.6 605 79.5
Aa31LG8G10930 Aethionema arabicum HOM05D003979 ORTHO05D005530 6.0e-277 957.2 610 78.0
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 6.0e-277 957.2 636 75.8
Thhalv10002451m.g Eutrema salsugineum HOM05D003979 ORTHO05D005530 7.9e-277 956.8 614 78.2
BolC7t41694H Brassica oleracea HOM05D003979 ORTHO05D005530 1.3e-276 956.1 630 77.0
Sp3g22010 Schrenkiella parvula HOM05D003979 ORTHO05D005530 1.3e-276 956.1 623 77.5
ATR0787G169 Amborella trichopoda HOM05D003979 ORTHO05D005530 3.0e-276 954.9 608 78.5
C01p39410 Brassica napus HOM05D003979 ORTHO05D005530 3.0e-276 954.9 608 78.6
BolC1t03890H Brassica oleracea HOM05D003979 ORTHO05D005530 3.0e-276 954.9 608 78.6
A01p30940 Brassica napus HOM05D003979 ORTHO05D005530 5.6e-275 950.7 618 77.8
BraA01t03222Z Brassica rapa HOM05D003979 ORTHO05D005530 5.6e-275 950.7 616 77.9
GSVIVG01029073001 Vitis vinifera HOM05D003979 ORTHO05D005530 7.4e-275 950.3 535 86.0
Hund11465 Selenicereus undatus HOM05D003979 ORTHO05D005530 2.1e-274 948.7 556 82.6
arahy.Tifrunner.gnm1.ann1.NX1XST Arachis hypogaea HOM05D003979 ORTHO05D005530 2.2e-271 938.7 623 75.6
AUR62010687 Chenopodium quinoa HOM05D003979 ORTHO05D005530 2.7e-269 931.8 566 80.6
Pp3c11_18700 Physcomitrium patens HOM05D003979 ORTHO05D005530 8.2e-266 920.2 572 77.4
SMO361G0245 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 1.5e-264 916.0 565 78.8
SGA_v2.0_scaffold31G12595 Striga asiatica HOM05D003979 ORTHO05D005530 3.4e-264 914.8 547 83.0
Gohir.D10G144500 Gossypium hirsutum HOM05D003979 ORTHO05D005530 7.9e-261 903.7 563 80.3
Mapoly0044s0128 Marchantia polymorpha HOM05D003979 ORTHO05D005530 5.1e-260 901.0 579 74.6
CBR_g16971 Chara braunii HOM05D003979 ORTHO05D005530 5.0e-255 884.4 567 75.5
HPP92_025762 Vanilla planifolia HOM05D003979 ORTHO05D005530 1.4e-252 876.3 535 80.4
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 1.1e-251 873.2 628 72.9
TWI09G0393 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 3.2e-238 828.6 632 67.4
Gorai.011G161400 Gossypium raimondii HOM05D003979 ORTHO05D005530 7.2e-238 827.4 619 69.5
Cre03.g206600 Chlamydomonas reinhardtii HOM05D003979 ORTHO05D005530 2.4e-233 812.4 567 69.7
MCO11G076 Micromonas commoda HOM05D003979 ORTHO05D005530 3.8e-231 805.1 567 68.6
unitig_899.g15534 Utricularia gibba HOM05D003979 ORTHO05D005530 8.3e-226 787.3 498 79.9
SMO361G0819 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 5.4e-225 784.6 495 78.2
AagrBONN_evm.TU.Sc2ySwM_228.3337 Anthoceros agrestis HOM05D003979 ORTHO05D005530 6.3e-218 761.1 473 78.6
QL06p023475 Quercus lobata HOM05D003979 ORTHO05D005530 3.1e-217 758.8 482 79.7
PRCOL_00005867 Prasinoderma coloniale HOM05D003979 ORTHO05D005530 9.2e-217 757.3 560 65.9
CDE04G1626 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 2.7e-216 755.7 441 84.6
Gohir.A10G121600 Gossypium hirsutum HOM05D003979 ORTHO05D005530 3.0e-212 742.3 434 83.6
HPP92_025735 Vanilla planifolia HOM05D003979 ORTHO05D005530 3.7e-210 735.3 498 75.5
SEGI_04002 Sequoiadendron giganteum HOM05D003979 ORTHO05D005530 1.0e-204 717.2 441 78.7
HPP92_025731 Vanilla planifolia HOM05D003979 ORTHO05D005530 3.4e-203 712.2 430 81.6
Cfa024863 Carpinus fangiana HOM05D003979 ORTHO05D005530 8.3e-202 707.6 568 61.4
vmacro00507 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 3.0e-191 672.5 411 81.8
Atru.chr4.1774 Acer truncatum HOM05D003979 ORTHO05D005530 3.6e-173 612.5 441 71.4
Cfa023757 Carpinus fangiana HOM05D003979 ORTHO05D005530 1.9e-166 590.1 579 52.8
Eucgr.H02826 Eucalyptus grandis HOM05D003979 ORTHO05D005530 6.7e-159 565.1 312 88.5
QL07p030448 Quercus lobata HOM05D003979 ORTHO05D000106 3.1e-148 529.6 386 72.0
Eucgr.C02488 Eucalyptus grandis HOM05D003979 ORTHO05D005530 1.9e-129 467.2 348 70.7
HanXRQChr14g0435341 Helianthus annuus HOM05D003979 ORTHO05D005530 4.7e-120 436.0 290 76.2
Manes.03G150102 Manihot esculenta HOM05D003979 ORTHO05D005530 8.3e-101 372.1 285 64.9
TPR.G30672 Trifolium pratense HOM05D003979 ORTHO05D005530 1.9e-89 334.3 224 74.6
CAN.G12.22 Capsicum annuum HOM05D003979 ORTHO05D005530 3.0e-82 310.5 212 76.4
vmacro00506 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 4.9e-77 293.1 199 76.9
Cfa023448 Carpinus fangiana HOM05D003979 ORTHO05D123299 2.3e-74 284.3 564 33.0
Eucgr.H02825 Eucalyptus grandis HOM05D003979 ORTHO05D015566 2.5e-65 254.2 158 76.6
Cfa020039 Carpinus fangiana HOM05D003979 ORTHO05D015566 1.6e-59 235.0 131 82.4
Duzib268G0265 Durio zibethinus HOM05D003979 ORTHO05D015566 2.3e-58 231.1 136 78.7
PGSC0003DMG400028636 Solanum tuberosum HOM05D003979 ORTHO05D015566 2.6e-54 217.6 115 93.0
QL07p012436 Quercus lobata HOM05D003979 ORTHO05D005530 3.4e-54 217.2 126 81.0
Oeu022341.1 Olea europaea HOM05D003979 ORTHO05D049433 1.3e-53 215.3 184 64.1
THA.LOC104809102 Tarenaya hassleriana HOM05D003979 ORTHO05D049433 4.6e-51 206.8 116 89.7
QL06p023466 Quercus lobata HOM05D003979 ORTHO05D015566 7.9e-51 206.1 114 81.6
Lsat_1_v5_gn_4_162440 Lactuca sativa HOM05D003979 ORTHO05D015566 4.8e-48 196.8 117 83.8
Gorai.005G140500 Gossypium raimondii HOM05D003979 ORTHO05D005530 4.9e-45 186.8 125 72.0
Gohir.D02G124900 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.1e-44 185.7 105 80.0
Eucgr.C02482 Eucalyptus grandis HOM05D003979 ORTHO05D015566 1.6e-43 181.8 115 73.0
Oeu006718.2 Olea europaea HOM05D003979 ORTHO05D005530 3.0e-42 177.6 109 84.4
CDE04G0146 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 3.7e-40 170.6 100 80.0
TPR.G30661 Trifolium pratense HOM05D003979 ORTHO05D005530 1.3e-37 162.2 215 47.4
TWI36G0080 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 3.3e-33 147.5 134 64.2
CAN.G12.20 Capsicum annuum HOM05D003979 ORTHO05D015566 1.1e-28 132.5 70 90.0
CAN.G12.21 Capsicum annuum HOM05D003979 ORTHO05D015566 1.8e-26 125.2 61 96.7
Lsat_1_v5_gn_5_133441 Lactuca sativa HOM05D003979 ORTHO05D015566 5.1e-26 123.6 124 56.5
TPR.G35859 Trifolium pratense HOM05D003979 ORTHO05D015566 4.2e-20 104.0 64 84.4
SMO361G0618 Selaginella moellendorffii HOM05D003979 ORTHO05D015566 2.1e-19 101.7 220 33.6
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 2.0e-17 95.1 180 31.1
HPP92_025734 Vanilla planifolia HOM05D003979 ORTHO05D005530 4.5e-14 84.0 48 79.2
TAR362G1054 Trochodendron aralioides HOM05D000447 ORTHO05D000315 6.5e-13 80.1 67 53.7
unitig_899.g15535 Utricularia gibba HOM05D003979 ORTHO05D005530 7.4e-09 66.6 82 48.8


User provided reference genes

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