Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 1.4e-120 436.4 243 100.0
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 2.7e-111 405.6 242 92.6
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 3.9e-110 401.7 243 91.8
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 3.3e-109 398.7 243 91.8
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 4.7e-108 394.8 243 90.5
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.4e-107 393.3 243 86.4
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 4.0e-107 391.7 243 88.9
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 1.0e-102 377.1 243 86.8
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.6e-100 369.8 243 84.8
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 3.6e-100 368.6 243 85.2
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 2.4e-99 365.9 243 80.2
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 4.0e-99 365.2 243 84.0
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 2.0e-98 362.8 242 85.1
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 2.3e-94 349.4 243 82.3
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 8.7e-94 347.4 205 88.3
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 1.5e-93 346.7 206 86.4
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 3.3e-93 345.5 243 80.2
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 7.3e-93 344.4 242 74.8
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 9.6e-93 344.0 243 80.2
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 1.3e-92 343.6 242 81.0
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 1.3e-92 343.6 206 85.4
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 1.6e-92 343.2 243 80.2
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 2.1e-92 342.8 243 77.0
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 2.1e-92 342.8 244 80.3
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 8.1e-92 340.9 229 83.8
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 1.1e-91 340.5 245 75.9
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 2.4e-91 339.3 243 74.1
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 3.1e-91 339.0 242 80.6
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 5.3e-91 338.2 242 74.0
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 1.5e-90 336.7 238 74.4
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 2.0e-90 336.3 243 77.8
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 2.0e-90 336.3 243 73.3
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 2.6e-90 335.9 243 73.7
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 2.6e-90 335.9 244 72.1
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 4.5e-90 335.1 242 81.0
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 5.8e-90 334.7 240 73.3
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 5.8e-90 334.7 242 77.3
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 7.6e-90 334.3 243 78.2
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 1.3e-89 333.6 209 81.3
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 1.7e-89 333.2 243 72.0
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 2.2e-89 332.8 243 72.8
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 2.2e-89 332.8 243 77.8
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 3.8e-89 332.0 243 75.7
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 4.9e-89 331.6 243 77.8
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 4.9e-89 331.6 242 78.5
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 8.4e-89 330.9 243 77.4
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 8.4e-89 330.9 246 71.1
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.4e-88 330.1 244 72.1
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 1.4e-88 330.1 242 75.6
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 2.4e-88 329.3 244 72.1
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.4e-88 329.3 244 71.7
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 2.4e-88 329.3 204 82.8
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 3.2e-88 328.9 243 78.6
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 4.2e-88 328.6 243 77.4
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 7.1e-88 327.8 242 76.4
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 9.3e-88 327.4 244 71.7
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 1.2e-87 327.0 229 82.1
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 1.2e-87 327.0 242 76.0
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 1.2e-87 327.0 199 84.9
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 1.6e-87 326.6 242 76.4
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 2.1e-87 326.2 205 82.9
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 4.6e-87 325.1 244 71.3
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 6.0e-87 324.7 240 72.5
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 6.0e-87 324.7 206 81.6
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 1.0e-86 323.9 242 76.0
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 1.0e-86 323.9 205 82.4
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 2.3e-86 322.8 242 76.0
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 3.0e-86 322.4 234 73.9
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 3.9e-86 322.0 206 81.1
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 5.1e-86 321.6 243 70.8
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 8.7e-86 320.9 243 74.9
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 1.1e-85 320.5 243 75.3
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 1.1e-85 320.5 205 80.0
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 1.5e-85 320.1 205 81.5
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 1.5e-85 320.1 252 69.4
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 2.5e-85 319.3 206 80.6
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 7.4e-85 317.8 208 79.8
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 2.8e-84 315.8 242 74.0
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 2.8e-84 315.8 242 74.0
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 2.8e-84 315.8 206 79.6
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 2.8e-84 315.8 205 80.5
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 3.7e-84 315.5 242 74.0
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 6.2e-84 314.7 242 70.2
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 6.2e-84 314.7 243 74.9
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 8.1e-84 314.3 199 81.9
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 8.1e-84 314.3 243 73.7
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 1.8e-83 313.2 242 71.1
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 5.3e-83 311.6 207 77.8
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 6.9e-83 311.2 243 73.3
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 2.0e-82 309.7 243 73.7
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 2.6e-82 309.3 242 69.4
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 3.4e-82 308.9 245 67.8
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 3.4e-82 308.9 243 71.6
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 7.6e-82 307.8 243 72.0
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 7.6e-82 307.8 205 77.1
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 9.9e-82 307.4 245 67.8
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 2.2e-81 306.2 246 71.5
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 2.2e-81 306.2 228 72.4
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 2.2e-81 306.2 211 83.9
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 2.9e-81 305.8 229 73.8
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 4.9e-81 305.1 245 66.9
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 8.4e-81 304.3 209 77.0
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 1.9e-80 303.1 202 79.7
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 3.2e-80 302.4 245 66.9
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 3.2e-80 302.4 193 80.8
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 4.2e-80 302.0 208 75.0
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 5.5e-80 301.6 244 67.2
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 9.3e-80 300.8 207 76.3
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 1.2e-79 300.4 207 76.3
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 2.7e-79 299.3 245 66.5
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 4.6e-79 298.5 244 69.7
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 1.0e-78 297.4 245 65.3
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 1.3e-78 297.0 205 73.7
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 3.9e-78 295.4 243 68.3
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 1.5e-77 293.5 205 75.6
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 5.6e-77 291.6 214 71.5
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 5.6e-77 291.6 214 71.5
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 2.8e-76 289.3 214 71.0
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 2.8e-76 289.3 214 71.0
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 2.2e-73 279.6 183 78.1
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 6.1e-71 271.6 243 60.9
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 1.3e-70 270.4 197 72.1
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 2.3e-70 269.6 228 64.0
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 5.1e-70 268.5 178 74.7
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 1.4e-62 243.8 198 63.6
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 9.1e-59 231.1 151 77.5
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 8.5e-57 224.6 212 61.3
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 5.5e-56 221.9 191 63.4
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 3.3e-53 212.6 212 57.1
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 7.0e-51 204.9 171 67.8
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 4.2e-48 195.7 133 73.7
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 3.3e-45 186.0 212 54.7
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 5.7e-45 185.3 111 78.4
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 1.5e-40 170.6 176 53.4
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 1.5e-37 160.6 173 50.9
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 5.3e-35 152.1 105 70.5
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 8.8e-30 134.8 91 92.3
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 2.0e-29 133.7 188 42.6
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 9.1e-27 124.8 86 67.4
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 5.0e-25 119.0 97 64.9
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 1.8e-19 100.5 91 64.8
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 7.3e-16 88.6 183 31.7
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 4.7e-15 85.9 54 79.6
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 4.1e-11 72.8 188 29.3
FAN23G1155 Fragaria x ananassa HOM05D001255 ORTHO05D011996 1.0e-09 68.2 80 55.0
FAN20G1163 Fragaria x ananassa HOM05D001255 ORTHO05D006136 5.6e-08 62.4 83 47.0
FAN23G1307 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.8e-07 60.1 63 57.1


User provided reference genes

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