Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G710.49 Capsicum annuum HOM05D004739 ORTHO05D005784 0.0e+00 1135.6 558 100.0
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 2.1e-292 1008.4 557 89.2
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 5.1e-291 1003.8 557 87.1
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 1.9e-290 1001.9 557 88.9
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 8.2e-289 996.5 574 85.2
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 1.4e-248 862.8 548 79.2
Actinidia38940 Actinidia chinensis HOM05D004739 ORTHO05D005784 1.9e-232 809.3 558 69.5
Hma1.2p1_1286F.1_g273220 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 2.4e-232 808.9 557 71.1
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 1.2e-231 806.6 557 70.4
Cc03_g10760 Coffea canephora HOM05D004739 ORTHO05D005784 4.6e-231 804.7 558 70.4
Migut.N00187 Erythranthe guttata HOM05D004739 ORTHO05D005784 1.5e-229 799.7 553 70.7
Lj6C358T14 Lonicera japonica HOM05D004739 ORTHO05D005784 4.7e-228 794.7 559 69.1
vmacro15619 Vaccinium macrocarpon HOM05D004739 ORTHO05D005784 7.5e-226 787.3 579 67.0
Hma1.2p1_1286F.1_g273230 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 1.7e-225 786.2 526 72.6
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 2.7e-223 778.9 557 68.2
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 3.5e-223 778.5 554 69.1
Thecc.04G186700 Theobroma cacao HOM05D004739 ORTHO05D005784 2.3e-222 775.8 554 68.2
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 3.3e-221 771.9 554 68.1
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 1.6e-220 769.6 555 67.7
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 4.0e-219 765.0 556 68.2
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 5.2e-219 764.6 556 68.2
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 8.9e-219 763.8 557 65.9
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 1.5e-218 763.1 554 67.5
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 7.5e-218 760.8 554 67.3
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 9.9e-218 760.4 553 66.9
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 2.9e-217 758.8 553 68.2
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 3.7e-217 758.4 557 66.2
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 4.9e-217 758.1 554 66.8
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 1.4e-216 756.5 551 66.2
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 2.7e-215 752.3 629 60.7
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 1.0e-214 750.4 558 66.3
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 1.0e-214 750.4 550 67.1
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 5.1e-214 748.0 590 62.9
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 6.6e-214 747.7 551 66.2
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 1.2e-212 743.4 554 66.4
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 4.7e-212 741.5 584 63.9
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 8.1e-212 740.7 553 64.0
TWI73G0948 Tripterygium wilfordii HOM05D004739 ORTHO05D005784 1.4e-211 740.0 554 64.4
MBI11_g12232_MAGBIO Magnolia biondii HOM05D004739 ORTHO05D005784 4.0e-211 738.4 572 63.1
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 1.5e-210 736.5 557 64.6
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 3.4e-210 735.3 553 66.4
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 4.4e-210 734.9 555 64.7
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 1.7e-209 733.0 557 64.1
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 4.9e-209 731.5 553 66.2
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 8.4e-209 730.7 553 63.3
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 2.4e-208 729.2 554 64.1
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 1.2e-207 726.9 552 64.5
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 1.2e-207 726.9 552 64.5
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 2.1e-207 726.1 553 64.0
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.3e-206 723.4 584 62.8
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 2.3e-206 722.6 554 63.9
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 3.0e-206 722.2 553 63.1
ClCG08G000320 Citrullus lanatus HOM05D004739 ORTHO05D005784 6.6e-206 721.1 553 64.2
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 1.6e-204 716.5 553 63.8
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 1.1e-203 713.8 558 62.4
Lj1g0022138 Lotus japonicus HOM05D004739 ORTHO05D005784 1.1e-203 713.8 552 63.6
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 1.4e-203 713.4 553 63.3
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 3.1e-203 712.2 553 62.2
Atru.BG.162.p Acer truncatum HOM05D004739 ORTHO05D005784 7.6e-202 707.6 457 73.5
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 7.6e-202 707.6 552 63.4
Oeu006039.1 Olea europaea HOM05D004739 ORTHO05D005784 7.6e-202 707.6 578 62.8
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 4.2e-200 701.8 552 62.1
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 7.1e-200 701.0 553 62.7
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 1.2e-199 700.3 552 62.9
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 2.7e-199 699.1 553 62.2
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 1.3e-198 696.8 581 62.3
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 4.8e-196 688.3 552 61.2
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 2.5e-189 666.0 443 71.6
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 7.4e-189 664.5 554 57.8
Sp1g35310 Schrenkiella parvula HOM05D004739 ORTHO05D005784 1.3e-188 663.7 553 59.1
Carub.0001s3748 Capsella rubella HOM05D004739 ORTHO05D005784 4.8e-188 661.8 553 59.0
Aa31LG10G5400 Aethionema arabicum HOM05D004739 ORTHO05D005784 6.2e-188 661.4 556 59.0
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 1.4e-187 660.2 561 57.4
AL1G54960 Arabidopsis lyrata HOM05D004739 ORTHO05D005784 1.4e-187 660.2 553 59.1
A08p04770 Brassica napus HOM05D004739 ORTHO05D005784 6.9e-187 657.9 563 58.3
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 6.9e-187 657.9 553 62.0
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 3.4e-186 655.6 558 58.1
C08p05140 Brassica napus HOM05D004739 ORTHO05D005784 1.9e-184 649.8 563 57.2
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 2.5e-184 649.4 582 55.7
BolC8t47324H Brassica oleracea HOM05D004739 ORTHO05D005784 9.3e-184 647.5 563 57.7
Zm00001eb375390 Zea mays HOM05D004739 ORTHO05D005784 3.5e-183 645.6 553 57.0
MD09G1250400 Malus domestica HOM05D004739 ORTHO05D005784 4.6e-183 645.2 479 68.3
BcaC07g37141 Brassica carinata HOM05D004739 ORTHO05D005784 1.3e-182 643.7 579 55.8
EL10Ac3g05589 Beta vulgaris HOM05D004739 ORTHO05D005784 1.8e-182 643.3 570 58.4
BraA08t32506Z Brassica rapa HOM05D004739 ORTHO05D005784 1.5e-181 640.2 604 54.8
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 2.5e-176 622.9 553 58.2
Ca_07125_v3 Cicer arietinum L. HOM05D004739 ORTHO05D005784 1.8e-171 606.7 552 56.3
HPP92_024254 Vanilla planifolia HOM05D004739 ORTHO05D005784 2.4e-171 606.3 557 54.2
Rhsim02G0071300 Rhododendron simsii HOM05D004739 ORTHO05D005784 1.9e-168 596.7 558 56.6
SEGI_11980 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 1.9e-160 570.1 605 49.4
CDE02G3320 Ceratophyllum demersum HOM05D004739 ORTHO05D005784 2.7e-151 539.7 560 50.4
CiPaw.01G109700 Carya illinoinensis HOM05D004739 ORTHO05D005784 6.1e-151 538.5 413 64.9
Dinv31047 Davidia involucrata HOM05D004739 ORTHO05D005784 3.1e-147 526.2 441 61.2
Dinv31053 Davidia involucrata HOM05D004739 ORTHO05D005784 3.1e-147 526.2 441 61.2
Pp3c5_2670 Physcomitrium patens HOM05D004739 ORTHO05D005784 3.2e-144 516.2 609 44.7
BcaB04g17436 Brassica carinata HOM05D004739 ORTHO05D005784 9.4e-144 514.6 556 50.0
AagrBONN_evm.TU.Sc2ySwM_344.4128 Anthoceros agrestis HOM05D004739 ORTHO05D002352 1.0e-142 511.1 585 47.0
Mapoly0005s0042 Marchantia polymorpha HOM05D004739 ORTHO05D005784 1.5e-141 507.3 623 43.7
TPR.G22177 Trifolium pratense HOM05D004739 ORTHO05D005784 1.2e-135 487.6 311 74.6
SMO331G0087 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.5e-133 478.4 483 50.7
SMO203G0018 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 8.3e-132 474.9 556 46.8
SMO327G0027 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.4e-131 473.4 516 49.0
SMO331G0089 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 9.1e-131 471.5 556 46.9
SMO327G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.9e-128 463.8 516 48.6
MD00G1163900 Malus domestica HOM05D004739 ORTHO05D005784 4.2e-128 462.6 276 77.5
AT1G48360 Arabidopsis thaliana HOM05D004739 ORTHO05D005784 4.4e-125 452.6 412 55.1
Glyma.08G259832 Glycine max HOM05D004739 ORTHO05D005784 6.0e-114 415.6 359 57.7
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 3.0e-113 413.3 605 41.0
Prupe.1G176700 Prunus persica HOM05D004739 ORTHO05D005784 2.1e-106 390.6 333 61.6
Gohir.A03G095900 Gossypium hirsutum HOM05D004739 ORTHO05D005784 7.8e-106 388.7 334 61.1
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.1e-99 368.2 460 43.0
CSS0028447 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 2.4e-99 367.1 315 59.4
SMO327G0008 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.4e-91 340.5 418 46.7
PGSC0003DMG400021624 Solanum tuberosum HOM05D004739 ORTHO05D005784 6.2e-87 325.9 165 91.5
SMO110G0011 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.4e-86 323.9 448 43.3
Cre16.g660350 Chlamydomonas reinhardtii HOM05D004739 ORTHO05D005784 1.3e-81 308.1 427 41.2
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.4e-75 288.1 455 40.0
SMO252G0014 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.4e-75 287.3 464 36.6
PRCOL_00003987 Prasinoderma coloniale HOM05D004739 ORTHO05D005784 1.3e-71 275.0 501 35.1
CBR_g39432 Chara braunii HOM05D004739 ORTHO05D005784 1.2e-66 258.5 270 50.4
Haze_11712 Corylus avellana HOM05D004739 ORTHO05D005784 2.4e-62 244.2 139 80.6
SMO110G0002 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.2e-59 233.8 275 46.2
SMO252G0017 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.4e-54 218.4 193 53.9
Cfa022531 Carpinus fangiana HOM05D004739 ORTHO05D121730 2.7e-50 204.1 512 30.1
SMO331G0063 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.2e-45 188.7 162 54.9
Cfa015247 Carpinus fangiana HOM05D004739 ORTHO05D005784 2.0e-45 188.0 107 80.4
FAN17G2248 Fragaria x ananassa HOM05D004739 ORTHO05D005784 4.5e-45 186.8 164 58.5
CARHR037970 Cardamine hirsuta HOM05D004739 ORTHO05D005784 7.7e-45 186.0 229 45.0
TPR.G2943 Trifolium pratense HOM05D004739 ORTHO05D005784 9.4e-43 179.1 169 54.4
MCO01G753 Micromonas commoda HOM05D004739 ORTHO05D005784 1.0e-41 175.6 334 33.2
CSS0043638 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.4e-41 175.3 151 60.3
Lj6A353T82 Lonicera japonica HOM05D004739 ORTHO05D005784 3.9e-41 173.7 106 74.5
Actinidia34750 Actinidia chinensis HOM05D004739 ORTHO05D005784 8.8e-41 172.6 111 72.1
CAN.G1076.10 Capsicum annuum HOM05D004739 ORTHO05D005784 2.0e-29 134.8 79 83.5
Lj6P350T22 Lonicera japonica HOM05D004739 ORTHO05D005784 5.0e-28 130.2 130 53.1
Glyma.16G127800 Glycine max HOM05D004739 ORTHO05D005784 1.9e-27 128.3 89 66.3
Zm00001eb188740 Zea mays HOM05D004739 ORTHO05D005784 2.1e-26 124.8 84 70.2
Zm00001eb188730 Zea mays HOM05D004739 ORTHO05D005784 2.7e-26 124.4 86 64.0
SHI06489 Sapria himalayana HOM05D004739 ORTHO05D000023 1.5e-24 118.6 253 34.4
CSS0002286 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 9.8e-24 115.9 82 70.7
CBR_g7993 Chara braunii HOM05D004739 ORTHO05D005784 4.2e-19 100.5 216 31.0
SMO331G0066 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.2e-13 82.4 149 34.2
BolC1t05400H Brassica oleracea HOM05D000493 ORTHO05D001355 5.0e-12 77.0 58 58.6
Lj6P352T60 Lonicera japonica HOM05D004739 ORTHO05D005784 7.3e-11 73.2 75 45.3
SMO110G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.0e-08 65.1 71 43.7
Dinv31052 Davidia involucrata HOM05D004739 ORTHO05D005784 4.4e-08 63.9 62 50.0


User provided reference genes

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