Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G708.1 Capsicum annuum HOM05D005544 ORTHO05D027614 4.8e-55 217.6 112 100.0
CAN.G184.38 Capsicum annuum HOM05D005544 ORTHO05D007303 2.4e-22 109.0 75 80.0
Solyc05g010470.4 Solanum lycopersicum HOM05D005544 ORTHO05D007303 1.6e-21 106.3 75 77.3
Sopen05g006280 Solanum pennellii HOM05D005544 ORTHO05D007303 1.6e-21 106.3 75 77.3
PGSC0003DMG400043560 Solanum tuberosum HOM05D005544 ORTHO05D007303 2.6e-21 105.5 75 77.3
Peaxi162Scf00017g00211 Petunia axillaris HOM05D005544 ORTHO05D007303 7.7e-21 104.0 75 76.0
Nitab4.5_0009496g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 6.5e-20 100.9 75 73.3
Nitab4.5_0001651g0120 Nicotiana tabacum HOM05D005544 ORTHO05D007303 4.2e-19 98.2 75 72.0
Nitab4.5_0015534g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 5.5e-19 97.8 69 76.8
COL.COLO4_08045 Corchorus olitorius HOM05D005544 ORTHO05D007303 1.2e-18 96.7 70 72.9
Ciclev10019671m.g Citrus clementina HOM05D005544 ORTHO05D007303 2.7e-18 95.5 70 70.0
Sed0004995 Sechium edule HOM05D005544 ORTHO05D007303 3.6e-18 95.1 70 72.9
Prupe.1G201800 Prunus persica HOM05D005544 ORTHO05D007303 4.7e-18 94.7 71 70.4
Rhsim13G0018400 Rhododendron simsii HOM05D005544 ORTHO05D007303 6.1e-18 94.4 70 71.4
Actinidia00706 Actinidia chinensis HOM05D005544 ORTHO05D007303 1.4e-17 93.2 70 72.9
Cc01_g20090 Coffea canephora HOM05D005544 ORTHO05D007303 1.4e-17 93.2 75 69.3
DCAR_018371 Daucus carota HOM05D005544 ORTHO05D007303 1.8e-17 92.8 70 68.6
Dinv11286 Davidia involucrata HOM05D005544 ORTHO05D007303 2.3e-17 92.4 70 68.6
QL12p023632 Quercus lobata HOM05D005544 ORTHO05D007303 3.0e-17 92.0 70 68.6
Duzib211G0556 Durio zibethinus HOM05D005544 ORTHO05D007303 4.0e-17 91.7 70 70.0
Gohir.A08G044300 Gossypium hirsutum HOM05D005544 ORTHO05D007303 4.0e-17 91.7 70 68.6
Gohir.D08G054000 Gossypium hirsutum HOM05D005544 ORTHO05D007303 4.0e-17 91.7 70 68.6
Gorai.004G054300 Gossypium raimondii HOM05D005544 ORTHO05D007303 4.0e-17 91.7 70 68.6
Thecc.01G288500 Theobroma cacao HOM05D005544 ORTHO05D007303 4.0e-17 91.7 70 70.0
COL.COLO4_19838 Corchorus olitorius HOM05D005544 ORTHO05D007303 8.8e-17 90.5 63 79.4
MELO3C015885.2 Cucumis melo HOM05D005544 ORTHO05D007303 8.8e-17 90.5 70 68.6
QL05p077001 Quercus lobata HOM05D005544 ORTHO05D007303 8.8e-17 90.5 70 68.6
QL12p023600 Quercus lobata HOM05D005544 ORTHO05D007303 8.8e-17 90.5 70 68.6
QL12p023649 Quercus lobata HOM05D005544 ORTHO05D007303 8.8e-17 90.5 70 68.6
GSVIVG01011022001 Vitis vinifera HOM05D005544 ORTHO05D007303 8.8e-17 90.5 70 67.1
Atru.chr5.1295 Acer truncatum HOM05D005544 ORTHO05D007303 1.2e-16 90.1 70 68.6
Cfa004766 Carpinus fangiana HOM05D005544 ORTHO05D007303 1.2e-16 90.1 70 67.1
MD03G1274200 Malus domestica HOM05D005544 ORTHO05D007303 1.2e-16 90.1 71 69.0
TAR362G0205 Trochodendron aralioides HOM05D005544 ORTHO05D007303 1.5e-16 89.7 70 68.6
vmacro02516 Vaccinium macrocarpon HOM05D005544 ORTHO05D007303 1.5e-16 89.7 70 70.0
ECA248G0063 Erigeron canadensis HOM05D005544 ORTHO05D007303 2.0e-16 89.4 70 65.7
HanXRQChr11g0334851 Helianthus annuus HOM05D005544 ORTHO05D007303 2.0e-16 89.4 70 68.6
Haze_10363 Corylus avellana HOM05D005544 ORTHO05D007303 2.6e-16 89.0 70 67.1
MD11G1296600 Malus domestica HOM05D005544 ORTHO05D007303 2.6e-16 89.0 71 67.6
Potri.014G135600 Populus trichocarpa HOM05D005544 ORTHO05D007303 2.6e-16 89.0 70 67.1
PGR044G1528 Punica granatum HOM05D005544 ORTHO05D007303 2.6e-16 89.0 70 65.7
PGR088G0006 Punica granatum HOM05D005544 ORTHO05D007303 2.6e-16 89.0 70 65.7
Sabra14G0102000 Salix brachista HOM05D005544 ORTHO05D007303 2.6e-16 89.0 70 67.1
CSS0033644 Camellia sinensis var. sinensis HOM05D005544 ORTHO05D007303 3.3e-16 88.6 70 70.0
MBI11_g11983_MAGBIO Magnolia biondii HOM05D005544 ORTHO05D007303 3.3e-16 88.6 70 65.7
SalBow2G1504 Salvia bowleyana HOM05D005544 ORTHO05D007303 3.3e-16 88.6 70 65.7
AUR62037787 Chenopodium quinoa HOM05D005544 ORTHO05D007303 4.4e-16 88.2 70 67.1
Lsat_1_v5_gn_5_189761 Lactuca sativa HOM05D005544 ORTHO05D007303 4.4e-16 88.2 70 67.1
Manes.02G181800 Manihot esculenta HOM05D005544 ORTHO05D007303 4.4e-16 88.2 70 67.1
Potri.002G213500 Populus trichocarpa HOM05D005544 ORTHO05D007303 4.4e-16 88.2 70 65.7
QL02p074655 Quercus lobata HOM05D005544 ORTHO05D007303 4.4e-16 88.2 70 67.1
QL12p023536 Quercus lobata HOM05D005544 ORTHO05D007303 4.4e-16 88.2 70 67.1
SGA_v2.0_scaffold172G39056 Striga asiatica HOM05D005544 ORTHO05D007303 4.4e-16 88.2 70 67.1
CiPaw.07G098400 Carya illinoinensis HOM05D005544 ORTHO05D007303 5.7e-16 87.8 70 65.7
AUR62042230 Chenopodium quinoa HOM05D005544 ORTHO05D007303 5.7e-16 87.8 70 65.7
TWI59G1451 Tripterygium wilfordii HOM05D005544 ORTHO05D007303 5.7e-16 87.8 70 67.1
Oeu047906.1 Olea europaea HOM05D005544 ORTHO05D007303 9.7e-16 87.0 75 64.0
Ah.09g228790 Amaranthus hybridus HOM05D005544 ORTHO05D007303 1.3e-15 86.7 69 66.7
CsaV3_7G028370 Cucumis sativus L. HOM05D005544 ORTHO05D007303 1.3e-15 86.7 70 67.1
Hma1.2p1_0358F.1_g134770 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 1.3e-15 86.7 69 66.7
Hma1.2p1_0358F.1_g134780 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 1.3e-15 86.7 69 66.7
PSO541G2439 Papaver somniferum HOM05D005544 ORTHO05D007303 2.2e-15 85.9 70 65.7
PSO675G2029 Papaver somniferum HOM05D005544 ORTHO05D007303 2.2e-15 85.9 70 65.7
RcHm_v2.0_Chr7g0215731 Rosa chinensis HOM05D005544 ORTHO05D007303 2.2e-15 85.9 71 66.2
THA.LOC104802213 Tarenaya hassleriana HOM05D005544 ORTHO05D007303 2.2e-15 85.9 70 64.3
CARHR143370 Cardamine hirsuta HOM05D005544 ORTHO05D007303 2.8e-15 85.5 70 64.3
Nn3g18705 Nelumbo nucifera HOM05D005544 ORTHO05D007303 2.8e-15 85.5 70 65.7
Cpa.g.sc9.148 Carica papaya HOM05D005544 ORTHO05D007303 3.7e-15 85.1 70 64.3
Thhalv10001392m.g Eutrema salsugineum HOM05D005544 ORTHO05D007303 4.8e-15 84.7 69 68.1
Nn4g24755 Nelumbo nucifera HOM05D005544 ORTHO05D007303 6.3e-15 84.3 70 65.7
Lj1C40T13 Lonicera japonica HOM05D005544 ORTHO05D007303 8.2e-15 84.0 71 67.6
Migut.N02122 Erythranthe guttata HOM05D005544 ORTHO05D007303 1.1e-14 83.6 70 65.7
Migut.O00595 Erythranthe guttata HOM05D005544 ORTHO05D007303 1.1e-14 83.6 70 65.7
CANSAT25G0498 Cannabis sativa HOM05D005544 ORTHO05D007303 2.4e-14 82.4 71 62.0
unitig_22.g6695 Utricularia gibba HOM05D005544 ORTHO05D007303 3.1e-14 82.0 70 64.3
AL4G47580 Arabidopsis lyrata HOM05D005544 ORTHO05D007303 4.1e-14 81.6 69 63.8
AT2G47990 Arabidopsis thaliana HOM05D005544 ORTHO05D007303 4.1e-14 81.6 69 63.8
BcaB02g08729 Brassica carinata HOM05D005544 ORTHO05D007303 7.0e-14 80.9 69 63.8
FvH4_5g25500 Fragaria vesca HOM05D005544 ORTHO05D007303 7.0e-14 80.9 71 63.4
FAN08G3375 Fragaria x ananassa HOM05D005544 ORTHO05D007303 7.0e-14 80.9 71 63.4
FAN13G2222 Fragaria x ananassa HOM05D005544 ORTHO05D007303 7.0e-14 80.9 71 63.4
FAN18G1194 Fragaria x ananassa HOM05D005544 ORTHO05D007303 7.0e-14 80.9 71 63.4
BcaB01g05978 Brassica carinata HOM05D005544 ORTHO05D007303 9.1e-14 80.5 69 63.8
BolC3t12848H Brassica oleracea HOM05D005544 ORTHO05D007303 9.1e-14 80.5 69 63.8
Zm00001eb303580 Zea mays HOM05D005544 ORTHO05D007303 9.1e-14 80.5 70 58.6
C03p02930 Brassica napus HOM05D005544 ORTHO05D007303 1.2e-13 80.1 69 63.8
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 1.6e-13 79.7 70 62.9
A03p02590 Brassica napus HOM05D005544 ORTHO05D007303 1.6e-13 79.7 69 63.8
BraA03t09620Z Brassica rapa HOM05D005544 ORTHO05D007303 1.6e-13 79.7 69 63.8
Carub.0004s3071 Capsella rubella HOM05D005544 ORTHO05D007303 1.6e-13 79.7 69 62.3
VMungo0720G2755 Vigna mungo HOM05D005544 ORTHO05D007303 2.0e-13 79.3 70 61.4
BcaC06g36661 Brassica carinata HOM05D005544 ORTHO05D027614 2.7e-13 79.0 70 60.0
Lalb_Chr02g0143021 Lupinus albus HOM05D005544 ORTHO05D007303 2.7e-13 79.0 69 62.3
Sc17g0005190 Simmondsia chinensis HOM05D005544 ORTHO05D007303 2.7e-13 79.0 70 62.9
Os07g0224900 Oryza sativa ssp. japonica HOM05D005544 ORTHO05D007303 3.5e-13 78.6 75 54.7
Medtr1g089260 Medicago truncatula HOM05D005544 ORTHO05D007303 4.5e-13 78.2 70 61.4
Sp4g29910 Schrenkiella parvula HOM05D005544 ORTHO05D007303 5.9e-13 77.8 69 60.9
Ca_10382_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 7.7e-13 77.4 70 61.4
Ca_29660_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 7.7e-13 77.4 70 61.4
Aa31LG1G29410 Aethionema arabicum HOM05D005544 ORTHO05D007303 1.0e-12 77.0 70 61.4
Sed0004423 Sechium edule HOM05D005544 ORTHO05D007303 1.0e-12 77.0 68 58.8
Phvul.007G167300 Phaseolus vulgaris HOM05D005544 ORTHO05D007303 1.3e-12 76.6 70 58.6
Lj5g0002288 Lotus japonicus HOM05D005544 ORTHO05D007303 2.2e-12 75.9 70 61.4
TPR.G16943 Trifolium pratense HOM05D005544 ORTHO05D007303 2.2e-12 75.9 70 61.4
Aqoxy2G03155 Aquilegia oxysepala HOM05D005544 ORTHO05D007303 2.9e-12 75.5 74 58.1
BolC7t40575H Brassica oleracea HOM05D005544 ORTHO05D027614 2.9e-12 75.5 64 62.5
Psat6g168560 Pisum sativum HOM05D005544 ORTHO05D007303 8.5e-12 73.9 70 60.0
ATR0691G265 Amborella trichopoda HOM05D005544 ORTHO05D007303 3.2e-11 72.0 70 55.7
HPP92_015605 Vanilla planifolia HOM05D005544 ORTHO05D007303 3.2e-11 72.0 74 47.3
Glyma.10G022600 Glycine max HOM05D005544 ORTHO05D007303 4.2e-11 71.6 69 58.0
Glyma.02G151500 Glycine max HOM05D005544 ORTHO05D007303 5.5e-11 71.2 69 58.0
A07p00730 Brassica napus HOM05D005544 ORTHO05D027614 1.6e-10 69.7 63 60.3
SHI20711 Sapria himalayana HOM05D005544 ORTHO05D007303 2.7e-10 68.9 69 56.5
CDE07G0705 Ceratophyllum demersum HOM05D005544 ORTHO05D007303 5.2e-09 64.7 70 51.4
Actinidia24289 Actinidia chinensis HOM05D005544 ORTHO05D007303 2.2e-07 59.3 46 73.9
SMO119G0317 Selaginella moellendorffii HOM05D005544 ORTHO05D007303 2.8e-07 58.9 59 61.0
CAN.G1013.15 Capsicum annuum HOM05D000262 ORTHO05D012023 2.4e-06 55.8 36 72.2
SEGI_38002 Sequoiadendron giganteum HOM05D005544 ORTHO05D007303 5.4e-06 54.7 64 46.9


User provided reference genes

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