Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G697.8 Capsicum annuum HOM05D003925 ORTHO05D004832 2.2e-73 278.9 144 100.0
CAN.G798.55 Capsicum annuum HOM05D003925 ORTHO05D004832 7.3e-48 194.1 117 84.6
Solyc01g103680.3 Solanum lycopersicum HOM05D003925 ORTHO05D004832 4.0e-46 188.3 117 80.3
Sopen01g046090 Solanum pennellii HOM05D003925 ORTHO05D004832 4.0e-46 188.3 117 80.3
PGSC0003DMG400024923 Solanum tuberosum HOM05D003925 ORTHO05D004832 4.0e-46 188.3 117 80.3
Nitab4.5_0000948g0030 Nicotiana tabacum HOM05D003925 ORTHO05D004832 1.2e-45 186.8 117 78.6
Nitab4.5_0002596g0090 Nicotiana tabacum HOM05D003925 ORTHO05D004832 1.2e-45 186.8 117 78.6
Peaxi162Scf00011g00941 Petunia axillaris HOM05D003925 ORTHO05D004832 2.6e-45 185.7 117 80.3
CANSAT54G0877 Cannabis sativa HOM05D003925 ORTHO05D004832 2.1e-42 176.0 117 72.6
SGA_v2.0_scaffold42G15910 Striga asiatica HOM05D003925 ORTHO05D004832 3.5e-42 175.3 117 72.6
SGA_v2.0_scaffold8G04435 Striga asiatica HOM05D003925 ORTHO05D004832 1.0e-41 173.7 117 71.8
Cpa.g.sc30.25 Carica papaya HOM05D003925 ORTHO05D004832 1.3e-41 173.3 117 71.8
Eucgr.I02754 Eucalyptus grandis HOM05D003925 ORTHO05D004832 3.9e-41 171.8 117 69.2
Eucgr.L02024 Eucalyptus grandis HOM05D003925 ORTHO05D004832 3.9e-41 171.8 117 69.2
A03p27580 Brassica napus HOM05D003925 ORTHO05D004832 1.5e-40 169.9 117 70.1
Oeu000132.1 Olea europaea HOM05D003925 ORTHO05D004832 1.5e-40 169.9 117 70.1
C03p33290 Brassica napus HOM05D003925 ORTHO05D004832 1.9e-40 169.5 117 68.4
BolC3t15651H Brassica oleracea HOM05D003925 ORTHO05D004832 1.9e-40 169.5 117 68.4
Migut.N00826 Erythranthe guttata HOM05D003925 ORTHO05D004832 1.9e-40 169.5 117 70.1
CiPaw.06G173300 Carya illinoinensis HOM05D003925 ORTHO05D004832 2.5e-40 169.1 118 70.3
Dinv07476 Davidia involucrata HOM05D003925 ORTHO05D005835 2.5e-40 169.1 117 69.2
BcaC01g04841 Brassica carinata HOM05D003925 ORTHO05D004832 3.3e-40 168.7 117 68.4
BraA03t11971Z Brassica rapa HOM05D003925 ORTHO05D004832 3.3e-40 168.7 117 69.2
CiPaw.05G005700 Carya illinoinensis HOM05D003925 ORTHO05D004832 3.3e-40 168.7 118 68.6
Lsat_1_v5_gn_9_121141 Lactuca sativa HOM05D003925 ORTHO05D004832 4.3e-40 168.3 117 69.2
BcaB01g02930 Brassica carinata HOM05D003925 ORTHO05D004832 5.6e-40 167.9 117 67.5
THA.LOC104800040 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 5.6e-40 167.9 139 59.7
unitig_26.g9028 Utricularia gibba HOM05D003925 ORTHO05D005835 5.6e-40 167.9 117 66.7
Manes.07G023200 Manihot esculenta HOM05D003925 ORTHO05D004832 9.5e-40 167.2 118 67.8
MSTRG.5212 Avicennia marina HOM05D003925 ORTHO05D004832 1.2e-39 166.8 117 68.4
CSS0030901 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.2e-39 166.8 117 68.4
Thhalv10013427m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 1.2e-39 166.8 117 65.8
Manes.10G119400 Manihot esculenta HOM05D003925 ORTHO05D004832 1.6e-39 166.4 118 67.8
THA.LOC104799820 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 2.1e-39 166.0 117 68.4
Actinidia06473 Actinidia chinensis HOM05D003925 ORTHO05D004832 2.8e-39 165.6 117 67.5
ClCG10G007000 Citrullus lanatus HOM05D003925 ORTHO05D004832 2.8e-39 165.6 117 65.8
Lsat_1_v5_gn_7_76521 Lactuca sativa HOM05D003925 ORTHO05D004832 2.8e-39 165.6 118 69.5
Potri.004G223000 Populus trichocarpa HOM05D003925 ORTHO05D004832 2.8e-39 165.6 118 68.6
QL02p100243 Quercus lobata HOM05D003925 ORTHO05D004832 2.8e-39 165.6 125 64.0
Sp6g11590 Schrenkiella parvula HOM05D003925 ORTHO05D004832 2.8e-39 165.6 117 65.8
Actinidia26166 Actinidia chinensis HOM05D003925 ORTHO05D004832 3.6e-39 165.2 117 66.7
arahy.Tifrunner.gnm1.ann1.D6FTCL Arachis hypogaea HOM05D003925 ORTHO05D004832 3.6e-39 165.2 119 66.4
PGR142G2211 Punica granatum HOM05D003925 ORTHO05D004832 3.6e-39 165.2 117 67.5
Oeu023407.1 Olea europaea HOM05D003925 ORTHO05D004832 4.7e-39 164.9 117 68.4
Dinv19400 Davidia involucrata HOM05D003925 ORTHO05D004832 6.2e-39 164.5 117 66.7
Duzib132G1049 Durio zibethinus HOM05D003925 ORTHO05D004832 6.2e-39 164.5 117 69.2
Eucgr.L02026 Eucalyptus grandis HOM05D003925 ORTHO05D004832 8.1e-39 164.1 117 66.7
Gohir.A01G182900 Gossypium hirsutum HOM05D003925 ORTHO05D004832 8.1e-39 164.1 117 68.4
Gohir.D01G174000 Gossypium hirsutum HOM05D003925 ORTHO05D004832 8.1e-39 164.1 117 68.4
Gorai.002G216100 Gossypium raimondii HOM05D003925 ORTHO05D004832 8.1e-39 164.1 117 68.4
VMungo0540G0371 Vigna mungo HOM05D003925 ORTHO05D004832 8.1e-39 164.1 115 65.2
Actinidia39010 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.1e-38 163.7 117 67.5
Nn1g08458 Nelumbo nucifera HOM05D003925 ORTHO05D004832 1.1e-38 163.7 117 65.0
Sabra01G0168900 Salix brachista HOM05D003925 ORTHO05D004832 1.1e-38 163.7 118 66.9
TWI23G0121 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 1.1e-38 163.7 120 66.7
Aqoxy5G03033 Aquilegia oxysepala HOM05D003925 ORTHO05D004832 1.4e-38 163.3 118 66.9
SalBow3G3816 Salvia bowleyana HOM05D003925 ORTHO05D004832 1.4e-38 163.3 117 67.5
TPR.G2147 Trifolium pratense HOM05D003925 ORTHO05D004832 1.4e-38 163.3 115 64.3
Aa31LG4G9470 Aethionema arabicum HOM05D003925 ORTHO05D004832 1.8e-38 162.9 117 66.7
Gohir.A04G132700 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.8e-38 162.9 117 67.5
Gohir.D04G176300 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.8e-38 162.9 117 67.5
Phvul.006G218500 Phaseolus vulgaris HOM05D003925 ORTHO05D004832 1.8e-38 162.9 115 65.2
MSTRG.16495 Avicennia marina HOM05D003925 ORTHO05D004832 2.3e-38 162.5 117 68.4
DCAR_006681 Daucus carota HOM05D003925 ORTHO05D004832 3.1e-38 162.2 117 65.8
Prupe.1G577500 Prunus persica HOM05D003925 ORTHO05D004832 3.1e-38 162.2 117 65.0
Actinidia00183 Actinidia chinensis HOM05D003925 ORTHO05D004832 5.2e-38 161.4 117 65.8
CSS0002231 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 5.2e-38 161.4 117 65.0
CSS0020156 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 5.2e-38 161.4 117 65.0
CARHR258770 Cardamine hirsuta HOM05D003925 ORTHO05D004832 5.2e-38 161.4 117 64.1
AL8G23900 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 6.8e-38 161.0 117 65.0
COL.COLO4_17737 Corchorus olitorius HOM05D003925 ORTHO05D004832 6.8e-38 161.0 117 66.7
Hma1.2p1_0884F.1_g232530 Hydrangea macrophylla HOM05D003925 ORTHO05D004832 6.8e-38 161.0 118 68.6
Sed0019914 Sechium edule HOM05D003925 ORTHO05D004832 6.8e-38 161.0 117 66.7
PSO782G4904 Papaver somniferum HOM05D003925 ORTHO05D004832 8.9e-38 160.6 118 67.8
AT5G49945 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 1.2e-37 160.2 117 63.2
arahy.Tifrunner.gnm1.ann1.0HG9JC Arachis hypogaea HOM05D003925 ORTHO05D004832 1.2e-37 160.2 115 66.1
A01p15700 Brassica napus HOM05D003925 ORTHO05D004832 1.2e-37 160.2 117 65.0
Haze_10061 Corylus avellana HOM05D003925 ORTHO05D004832 1.2e-37 160.2 117 64.1
vmacro19868 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 1.2e-37 160.2 117 64.1
Ah.03g136840 Amaranthus hybridus HOM05D003925 ORTHO05D004832 1.5e-37 159.8 117 67.5
C01p19670 Brassica napus HOM05D003925 ORTHO05D004832 1.5e-37 159.8 117 65.0
BraA01t01508Z Brassica rapa HOM05D003925 ORTHO05D004832 1.5e-37 159.8 117 65.0
PSO170G6240 Papaver somniferum HOM05D003925 ORTHO05D004832 1.5e-37 159.8 118 67.8
Atru.chr6.781 Acer truncatum HOM05D003925 ORTHO05D004832 2.0e-37 159.5 118 66.9
Atru.chr6.812 Acer truncatum HOM05D003925 ORTHO05D004832 2.0e-37 159.5 118 66.9
BolC1t01894H Brassica oleracea HOM05D003925 ORTHO05D004832 2.0e-37 159.5 117 65.0
Gorai.012G167900 Gossypium raimondii HOM05D003925 ORTHO05D004832 2.0e-37 159.5 117 66.7
Hund15482 Selenicereus undatus HOM05D003925 ORTHO05D004832 2.0e-37 159.5 117 65.8
MELO3C016507.2 Cucumis melo HOM05D003925 ORTHO05D004832 2.6e-37 159.1 117 65.8
HanXRQChr07g0187361 Helianthus annuus HOM05D003925 ORTHO05D004832 3.4e-37 158.7 118 65.3
MD08G1240800 Malus domestica HOM05D003925 ORTHO05D004832 3.4e-37 158.7 117 63.2
Medtr2g005930 Medicago truncatula HOM05D003925 ORTHO05D004832 3.4e-37 158.7 115 63.5
Sc07g0004570 Simmondsia chinensis HOM05D003925 ORTHO05D004832 3.4e-37 158.7 117 64.1
HanXRQChr06g0181341 Helianthus annuus HOM05D003925 ORTHO05D004832 4.4e-37 158.3 118 66.1
CsaV3_3G006350 Cucumis sativus L. HOM05D003925 ORTHO05D004832 5.8e-37 157.9 117 65.8
Duzib052G0643 Durio zibethinus HOM05D003925 ORTHO05D004832 5.8e-37 157.9 117 65.8
Lj6g0026503 Lotus japonicus HOM05D003925 ORTHO05D004832 5.8e-37 157.9 115 63.5
RcHm_v2.0_Chr7g0220701 Rosa chinensis HOM05D003925 ORTHO05D004832 5.8e-37 157.9 118 64.4
Aa31LG3G6740 Aethionema arabicum HOM05D003925 ORTHO05D004832 7.5e-37 157.5 117 63.2
Cfa004507 Carpinus fangiana HOM05D003925 ORTHO05D005835 7.5e-37 157.5 117 63.2
Psat1g223280 Pisum sativum HOM05D003925 ORTHO05D004832 7.5e-37 157.5 115 61.7
AL7G28890 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 9.9e-37 157.1 117 64.1
AT4G24330 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 9.9e-37 157.1 117 64.1
TWI14G0879 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 9.9e-37 157.1 120 64.2
CDE08G0951 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 1.3e-36 156.8 117 61.5
Ciclev10000945m.g Citrus clementina HOM05D003925 ORTHO05D004832 1.3e-36 156.8 120 65.8
HanXRQChr16g0509421 Helianthus annuus HOM05D003925 ORTHO05D004832 1.3e-36 156.8 117 65.0
Lj9C300G1 Lonicera japonica HOM05D003925 ORTHO05D004832 1.3e-36 156.8 117 65.0
Thecc.02G024000 Theobroma cacao HOM05D003925 ORTHO05D004832 1.3e-36 156.8 117 64.1
TAR381G0375 Trochodendron aralioides HOM05D003925 ORTHO05D004832 1.3e-36 156.8 117 61.5
BcaC01g04842 Brassica carinata HOM05D003925 ORTHO05D004832 1.7e-36 156.4 120 64.2
Carub.0007s1672 Capsella rubella HOM05D003925 ORTHO05D004832 1.7e-36 156.4 117 63.2
Carub.0008s0983 Capsella rubella HOM05D003925 ORTHO05D004832 1.7e-36 156.4 117 60.7
CDE06G0202 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 1.7e-36 156.4 117 62.4
Thhalv10024818m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 1.7e-36 156.4 117 64.1
Glyma.12G167500 Glycine max HOM05D003925 ORTHO05D004832 1.7e-36 156.4 119 62.2
Nn5g27797 Nelumbo nucifera HOM05D003925 ORTHO05D004832 1.7e-36 156.4 117 64.1
MD15G1434000 Malus domestica HOM05D003925 ORTHO05D004832 2.2e-36 156.0 117 61.5
Lj5C262G4 Lonicera japonica HOM05D003925 ORTHO05D005835 2.9e-36 155.6 117 65.0
MBI09_g03430_MAGBIO Magnolia biondii HOM05D003925 ORTHO05D004832 4.9e-36 154.8 117 62.4
Sp7g22330 Schrenkiella parvula HOM05D003925 ORTHO05D004832 4.9e-36 154.8 117 63.2
CARHR231760 Cardamine hirsuta HOM05D003925 ORTHO05D004832 8.3e-36 154.1 117 62.4
Glyma.16G003600 Glycine max HOM05D003925 ORTHO05D004832 1.1e-35 153.7 123 58.5
ATR0584G077 Amborella trichopoda HOM05D003925 ORTHO05D004832 2.4e-35 152.5 117 59.8
C07p53570 Brassica napus HOM05D003925 ORTHO05D004832 5.4e-35 151.4 117 62.4
ECA240G1679 Erigeron canadensis HOM05D003925 ORTHO05D004832 5.4e-35 151.4 117 63.2
Lalb_Chr15g0090731 Lupinus albus HOM05D003925 ORTHO05D004832 5.4e-35 151.4 117 60.7
EL10Ac6g14144 Beta vulgaris HOM05D003925 ORTHO05D004832 7.1e-35 151.0 117 61.5
BcaC06g32885 Brassica carinata HOM05D003925 ORTHO05D004832 7.1e-35 151.0 117 62.4
BolC7t45848H Brassica oleracea HOM05D003925 ORTHO05D004832 1.2e-34 150.2 117 61.5
SEGI_07809 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 1.2e-34 150.2 117 58.1
SEGI_11230 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 1.2e-34 150.2 117 58.1
A03p55280 Brassica napus HOM05D003925 ORTHO05D004832 1.6e-34 149.8 117 62.4
BraA03t14587Z Brassica rapa HOM05D003925 ORTHO05D004832 1.6e-34 149.8 117 62.4
AUR62040618 Chenopodium quinoa HOM05D003925 ORTHO05D004832 1.6e-34 149.8 117 62.4
BcaNung05636 Brassica carinata HOM05D003925 ORTHO05D004832 1.3e-33 146.7 117 62.4
AUR62041951 Chenopodium quinoa HOM05D003925 ORTHO05D004832 2.3e-33 146.0 117 61.5
FAN04G1563 Fragaria x ananassa HOM05D003925 ORTHO05D004832 3.9e-33 145.2 118 59.3
FvH4_5g28340 Fragaria vesca HOM05D003925 ORTHO05D004832 6.6e-33 144.4 118 59.3
BcaC09g50878 Brassica carinata HOM05D003925 ORTHO05D004832 8.6e-33 144.1 117 60.7
CARHR231750 Cardamine hirsuta HOM05D003925 ORTHO05D004832 1.1e-32 143.7 117 58.1
Zm00001eb289240 Zea mays HOM05D003925 ORTHO05D004832 1.1e-32 143.7 118 61.0
FAN18G2864 Fragaria x ananassa HOM05D003925 ORTHO05D004832 1.9e-32 142.9 118 58.5
Zm00001eb348650 Zea mays HOM05D003925 ORTHO05D004832 2.5e-32 142.5 118 61.9
Os05g0432400 Oryza sativa ssp. japonica HOM05D003925 ORTHO05D004832 1.2e-31 140.2 118 59.3
Ca_00045_v3 Cicer arietinum L. HOM05D003925 ORTHO05D004832 4.7e-31 138.3 99 65.7
Rhsim11G0124300 Rhododendron simsii HOM05D003925 ORTHO05D004832 7.6e-29 131.0 119 54.6
SHI34757 Sapria himalayana HOM05D003925 ORTHO05D004832 2.9e-28 129.0 119 52.9
SMO356G0110 Selaginella moellendorffii HOM05D003925 ORTHO05D004832 2.9e-28 129.0 116 52.6
HPP92_013757 Vanilla planifolia HOM05D003925 ORTHO05D004832 3.8e-28 128.6 118 53.4
vmacro01723 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 2.4e-27 125.9 118 53.4
Pp3c5_6620 Physcomitrium patens HOM05D003925 ORTHO05D004832 8.7e-25 117.5 115 47.0
CARHR216310 Cardamine hirsuta HOM05D003925 ORTHO05D004832 1.6e-23 113.2 99 56.6
Mapoly0037s0012 Marchantia polymorpha HOM05D003925 ORTHO05D004832 2.8e-23 112.5 117 45.3
AagrBONN_evm.TU.Sc2ySwM_362.431 Anthoceros agrestis HOM05D003925 ORTHO05D004832 4.7e-23 111.7 117 46.2
Lalb_Chr20g0123671 Lupinus albus HOM05D003925 ORTHO05D004832 1.1e-22 110.5 84 59.5
CAN.G386.33 Capsicum annuum HOM05D003925 ORTHO05D004832 3.1e-22 109.0 70 74.3
CBR_g4722 Chara braunii HOM05D003925 ORTHO05D004832 4.0e-22 108.6 117 45.3
ECA236G3450 Erigeron canadensis HOM05D003925 ORTHO05D004832 3.4e-21 105.5 118 49.2
CAN.G963.3 Capsicum annuum HOM05D003925 ORTHO05D004832 1.5e-13 80.1 47 85.1
AL3G33580 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 5.1e-09 65.1 85 41.2
GSVIVG01023266001 Vitis vinifera HOM05D003925 ORTHO05D004832 3.3e-08 62.4 50 60.0
Cc02_g23030 Coffea canephora HOM05D003925 ORTHO05D004832 7.4e-08 61.2 49 59.2


User provided reference genes

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