Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G673.14 Capsicum annuum HOM05D005642 ORTHO05D006672 2.0e-292 1008.4 529 100.0
Sopen08g002430 Solanum pennellii HOM05D005642 ORTHO05D006672 4.4e-207 724.9 536 76.3
Solyc08g006480.3 Solanum lycopersicum HOM05D005642 ORTHO05D006672 7.4e-207 724.2 535 76.3
Peaxi162Scf00045g01740 Petunia axillaris HOM05D005642 ORTHO05D006672 6.1e-177 624.8 530 68.7
Nitab4.5_0004131g0010 Nicotiana tabacum HOM05D005642 ORTHO05D006672 9.5e-162 574.3 562 62.8
Nitab4.5_0000555g0260 Nicotiana tabacum HOM05D005642 ORTHO05D006672 7.1e-133 478.4 420 67.9
MSTRG.25774 Avicennia marina HOM05D005642 ORTHO05D006672 3.8e-62 243.4 582 39.3
Dinv03494 Davidia involucrata HOM05D005642 ORTHO05D006672 5.0e-62 243.0 595 35.8
Actinidia06420 Actinidia chinensis HOM05D005642 ORTHO05D006672 4.2e-61 240.0 602 35.5
CSS0029793 Camellia sinensis var. sinensis HOM05D005642 ORTHO05D006672 1.2e-60 238.4 600 35.7
SalBow8G4661 Salvia bowleyana HOM05D005642 ORTHO05D006672 1.1e-56 225.3 576 35.9
Hma1.2p1_0379F.1_g139820 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 1.4e-56 224.9 566 34.6
Migut.A00441 Erythranthe guttata HOM05D005642 ORTHO05D006672 2.9e-54 217.2 562 35.8
ClCG05G017540 Citrullus lanatus HOM05D005642 ORTHO05D006672 3.1e-51 207.2 518 33.6
Duzib168G1720 Durio zibethinus HOM05D005642 ORTHO05D006672 1.5e-50 204.9 569 34.4
QL12p025051 Quercus lobata HOM05D005642 ORTHO05D006672 2.6e-50 204.1 587 34.4
Gorai.001G001600 Gossypium raimondii HOM05D005642 ORTHO05D006672 1.7e-49 201.4 335 41.5
Oeu019279.2 Olea europaea HOM05D005642 ORTHO05D006672 1.7e-49 201.4 475 36.6
MD15G1108600 Malus domestica HOM05D005642 ORTHO05D006672 2.9e-49 200.7 512 33.6
CsaV3_3G047060 Cucumis sativus L. HOM05D005642 ORTHO05D006672 4.9e-49 199.9 514 34.0
SGA_v2.0_scaffold27G11668 Striga asiatica HOM05D005642 ORTHO05D006672 4.9e-49 199.9 540 36.3
Cc11_g04340 Coffea canephora HOM05D005642 ORTHO05D006672 1.1e-48 198.7 531 36.3
Thecc.09G006400 Theobroma cacao HOM05D005642 ORTHO05D006672 1.4e-48 198.4 346 40.5
VMungo1309G0073 Vigna mungo HOM05D005642 ORTHO05D006672 1.9e-48 198.0 608 31.4
CiPaw.07G213400 Carya illinoinensis HOM05D005642 ORTHO05D006672 2.4e-48 197.6 558 33.5
Gohir.D07G001900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 7.0e-48 196.1 335 40.9
Prupe.1G460900 Prunus persica HOM05D005642 ORTHO05D006672 9.2e-48 195.7 563 33.6
Migut.E01422 Erythranthe guttata HOM05D005642 ORTHO05D006672 3.5e-47 193.7 521 34.4
Ciclev10007752m.g Citrus clementina HOM05D005642 ORTHO05D006672 1.3e-46 191.8 614 30.1
Glyma.06G075900 Glycine max HOM05D005642 ORTHO05D006672 1.7e-46 191.4 561 34.8
Potri.018G006200 Populus trichocarpa HOM05D005642 ORTHO05D006672 2.3e-46 191.0 627 31.3
Sabra06G0213000 Salix brachista HOM05D005642 ORTHO05D006672 5.0e-46 189.9 640 30.3
DCAR_004570 Daucus carota HOM05D005642 ORTHO05D006672 6.6e-46 189.5 552 33.2
FAN27G2209 Fragaria x ananassa HOM05D005642 ORTHO05D006672 1.1e-45 188.7 459 33.3
Gohir.A07G001500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 1.1e-45 188.7 500 33.4
Manes.03G003300 Manihot esculenta HOM05D005642 ORTHO05D006672 2.5e-45 187.6 569 31.1
Sed0007069 Sechium edule HOM05D005642 ORTHO05D006672 5.6e-45 186.4 511 33.5
Lj1g0005947 Lotus japonicus HOM05D005642 ORTHO05D006672 7.3e-45 186.0 597 32.0
Ca_15671_v3 Cicer arietinum L. HOM05D005642 ORTHO05D006672 2.8e-44 184.1 623 32.1
FAN20G1085 Fragaria x ananassa HOM05D005642 ORTHO05D006672 4.7e-44 183.3 320 40.0
Hma1.2p1_0379F.1_g139825 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 4.7e-44 183.3 466 34.1
Potri.006G275200 Populus trichocarpa HOM05D005642 ORTHO05D006672 4.7e-44 183.3 606 29.5
TWI63G0215 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 3.1e-43 180.6 536 32.8
Phvul.009G100600 Phaseolus vulgaris HOM05D005642 ORTHO05D006672 4.0e-43 180.3 588 33.8
GSVIVG01035528001 Vitis vinifera HOM05D005642 ORTHO05D006672 5.2e-43 179.9 439 35.1
Psat5g024120 Pisum sativum HOM05D005642 ORTHO05D006672 1.2e-42 178.7 536 32.6
TAR383G0661 Trochodendron aralioides HOM05D005642 ORTHO05D006672 1.2e-42 178.7 368 37.2
CANSAT78G0024 Cannabis sativa HOM05D005642 ORTHO05D006672 7.5e-42 176.0 572 31.6
Cfa013263 Carpinus fangiana HOM05D005642 ORTHO05D006672 7.5e-42 176.0 490 35.3
Medtr3g108780 Medicago truncatula HOM05D005642 ORTHO05D006672 9.8e-42 175.6 554 32.7
COL.COLO4_19042 Corchorus olitorius HOM05D005642 ORTHO05D006672 1.3e-41 175.3 643 30.8
arahy.Tifrunner.gnm1.ann1.KDL0BF Arachis hypogaea HOM05D005642 ORTHO05D006672 2.9e-41 174.1 312 40.1
A08p18620 Brassica napus HOM05D005642 ORTHO05D006672 2.9e-41 174.1 294 41.2
Thhalv10024763m.g Eutrema salsugineum HOM05D005642 ORTHO05D006672 2.9e-41 174.1 371 36.9
Sp7g29290 Schrenkiella parvula HOM05D005642 ORTHO05D006672 4.9e-41 173.3 372 36.3
THA.LOC104803598 Tarenaya hassleriana HOM05D005642 ORTHO05D006672 4.9e-41 173.3 584 30.8
ECA246G0678 Erigeron canadensis HOM05D005642 ORTHO05D006672 6.4e-41 172.9 388 36.3
FvH4_2g36900 Fragaria vesca HOM05D005642 ORTHO05D006672 1.4e-40 171.8 558 30.5
RcHm_v2.0_Chr6g0304881 Rosa chinensis HOM05D005642 ORTHO05D006672 1.4e-40 171.8 482 30.9
TWI32G0776 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 1.9e-40 171.4 345 36.8
HanXRQChr17g0538601 Helianthus annuus HOM05D005642 ORTHO05D006672 2.4e-40 171.0 366 36.1
FAN15G2732 Fragaria x ananassa HOM05D005642 ORTHO05D006672 4.1e-40 170.2 459 31.4
BcaB03g12695 Brassica carinata HOM05D005642 ORTHO05D006672 5.4e-40 169.9 436 35.6
arahy.Tifrunner.gnm1.ann1.4FD105 Arachis hypogaea HOM05D005642 ORTHO05D006672 7.0e-40 169.5 586 31.2
BraA08t33825Z Brassica rapa HOM05D005642 ORTHO05D006672 9.2e-40 169.1 294 40.5
Haze_21725 Corylus avellana HOM05D005642 ORTHO05D006672 9.2e-40 169.1 402 35.3
CARHR239310 Cardamine hirsuta HOM05D005642 ORTHO05D006672 2.7e-39 167.5 378 35.2
Sabra18G0014300 Salix brachista HOM05D005642 ORTHO05D006672 3.5e-39 167.2 572 30.8
Lalb_Chr11g0064111 Lupinus albus HOM05D005642 ORTHO05D006672 5.1e-38 163.3 476 33.0
Lsat_1_v5_gn_3_25461 Lactuca sativa HOM05D005642 ORTHO05D006672 1.1e-37 162.2 317 39.7
A01p06850 Brassica napus HOM05D005642 ORTHO05D006672 1.5e-37 161.8 288 37.8
AUR62020612 Chenopodium quinoa HOM05D005642 ORTHO05D006672 1.9e-37 161.4 526 31.7
BcaC01g01089 Brassica carinata HOM05D005642 ORTHO05D006672 2.5e-37 161.0 299 39.8
C03p87980 Brassica napus HOM05D005642 ORTHO05D006672 2.5e-37 161.0 299 39.8
BolC3t21109H Brassica oleracea HOM05D005642 ORTHO05D006672 2.5e-37 161.0 299 39.8
Nn8g40457 Nelumbo nucifera HOM05D005642 ORTHO05D006672 2.5e-37 161.0 408 33.6
Carub.0007s0913 Capsella rubella HOM05D005642 ORTHO05D006672 3.3e-37 160.6 413 35.1
EL10Ac2g03740 Beta vulgaris HOM05D005642 ORTHO05D006672 5.6e-37 159.8 431 32.5
Gohir.D05G067500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 5.6e-37 159.8 301 37.5
BraA01t00636Z Brassica rapa HOM05D005642 ORTHO05D006672 7.3e-37 159.5 288 37.5
Glyma.04G074900 Glycine max HOM05D005642 ORTHO05D006672 9.5e-37 159.1 420 34.0
Hund19402 Selenicereus undatus HOM05D005642 ORTHO05D006672 2.8e-36 157.5 298 39.6
Gorai.009G068300 Gossypium raimondii HOM05D005642 ORTHO05D006672 1.1e-35 155.6 301 37.2
BcaNung04589 Brassica carinata HOM05D005642 ORTHO05D006672 6.8e-35 152.9 290 36.9
Lalb_Chr23g0269061 Lupinus albus HOM05D005642 ORTHO05D006672 8.9e-35 152.5 500 30.6
Gohir.A05G064900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 1.2e-34 152.1 304 36.8
SalBow4G3316 Salvia bowleyana HOM05D005642 ORTHO05D006672 1.5e-34 151.8 563 30.7
BolC1t00742H Brassica oleracea HOM05D005642 ORTHO05D006672 3.4e-34 150.6 293 35.8
vmacro00200 Vaccinium macrocarpon HOM05D005642 ORTHO05D006672 4.4e-34 150.2 754 28.2
BcaC09g51922 Brassica carinata HOM05D005642 ORTHO05D006672 4.9e-33 146.7 286 36.0
C01p07620 Brassica napus HOM05D005642 ORTHO05D006672 4.9e-33 146.7 286 36.0
PGR044G2675 Punica granatum HOM05D005642 ORTHO05D006672 4.9e-33 146.7 597 29.8
MELO3C003630.2 Cucumis melo HOM05D005642 ORTHO05D006672 6.4e-33 146.4 300 35.7
Ah.11g043760 Amaranthus hybridus HOM05D005642 ORTHO05D006672 8.3e-33 146.0 351 34.5
BcaNung04578 Brassica carinata HOM05D005642 ORTHO05D006672 1.4e-32 145.2 313 37.7
Aa31LG2G18900 Aethionema arabicum HOM05D005642 ORTHO05D006672 1.9e-32 144.8 313 37.1
Eucgr.C04006 Eucalyptus grandis HOM05D005642 ORTHO05D006672 4.1e-32 143.7 591 29.6
AT4G31430 Arabidopsis thaliana HOM05D005642 ORTHO05D006672 1.2e-31 142.1 371 34.2
PSO170G3270 Papaver somniferum HOM05D005642 ORTHO05D006672 2.7e-31 141.0 579 30.1
Hund03285 Selenicereus undatus HOM05D005642 ORTHO05D006672 7.8e-31 139.4 535 30.8
AL7G20630 Arabidopsis lyrata HOM05D005642 ORTHO05D006672 3.0e-30 137.5 448 31.5
MD08G1130500 Malus domestica HOM05D005642 ORTHO05D006672 1.9e-29 134.8 473 30.9
Oeu014127.1 Olea europaea HOM05D005642 ORTHO05D006672 2.5e-29 134.4 363 33.9
PSO063G4833 Papaver somniferum HOM05D005642 ORTHO05D006672 2.8e-28 131.0 551 29.6
Aqoxy7G02962 Aquilegia oxysepala HOM05D005642 ORTHO05D006672 8.1e-28 129.4 572 30.4
Atru.chr7.2633 Acer truncatum HOM05D005642 ORTHO05D006672 1.3e-25 122.1 309 33.7
AUR62009051 Chenopodium quinoa HOM05D005642 ORTHO05D006672 3.8e-25 120.6 481 29.7
Cpa.g.sc23.5 Carica papaya HOM05D005642 ORTHO05D006672 8.4e-25 119.4 290 33.4
Sc23g0006020 Simmondsia chinensis HOM05D005642 ORTHO05D006672 4.2e-24 117.1 432 29.2
Oeu048000.1 Olea europaea HOM05D005642 ORTHO05D006672 7.8e-23 112.8 331 32.6
MBI14_g08146_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 3.9e-22 110.5 398 28.9
CDE05G2573 Ceratophyllum demersum HOM05D006228 ORTHO05D007847 1.1e-21 109.0 419 28.9
MBI16_g31790_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 5.6e-21 106.7 548 29.0
DCAR_000668 Daucus carota HOM05D005642 ORTHO05D006672 5.3e-19 100.1 548 28.3
Lsat_1_v5_gn_5_61101 Lactuca sativa HOM05D005642 ORTHO05D006672 2.6e-18 97.8 396 28.0
unitig_747.g21903 Utricularia gibba HOM05D005642 ORTHO05D006672 2.6e-18 97.8 522 25.5
Rhsim09G0061700 Rhododendron simsii HOM05D005642 ORTHO05D006672 5.4e-16 90.1 443 29.1
SHI21128 Sapria himalayana HOM05D005642 ORTHO05D006672 5.4e-16 90.1 155 37.4
HanXRQChr13g0412371 Helianthus annuus HOM05D005642 ORTHO05D006672 1.2e-15 89.0 197 37.1
unitig_0.g2821 Utricularia gibba HOM05D005642 ORTHO05D006672 7.8e-15 86.3 288 30.2
HPP92_015370 Vanilla planifolia HOM05D005642 ORTHO05D006672 7.8e-15 86.3 293 32.1
CDE07G1180 Ceratophyllum demersum HOM05D005642 ORTHO05D006672 8.7e-14 82.8 238 30.7
BraA03t15110Z Brassica rapa HOM05D005642 ORTHO05D006672 5.6e-13 80.1 182 36.3
ECA240G1730 Erigeron canadensis HOM05D000542 ORTHO05D006672 2.4e-11 74.7 373 27.1
ATR0697G055 Amborella trichopoda HOM05D003044 ORTHO05D001869 6.9e-11 73.2 289 30.1
HanXRQChr03g0082481 Helianthus annuus HOM05D005642 ORTHO05D006672 3.4e-10 70.9 347 26.5
SEGI_30019 Sequoiadendron giganteum HOM05D003044 ORTHO05D006672 1.3e-09 68.9 346 28.6
Zm00001eb067810 Zea mays HOM05D005642 ORTHO05D006672 1.3e-09 68.9 320 29.1
Zm00001eb432470 Zea mays HOM05D005642 ORTHO05D006672 3.8e-09 67.4 531 26.7
DCAR_018987 Daucus carota HOM05D003044 ORTHO05D001869 8.4e-09 66.2 252 30.2
arahy.Tifrunner.gnm1.ann1.GW4HJP Arachis hypogaea HOM05D000013 ORTHO05D021469 1.4e-08 65.5 148 30.4
Atru.chr7.2632 Acer truncatum HOM05D005642 ORTHO05D006672 1.9e-08 65.1 152 33.6
VMungo1309G0147 Vigna mungo HOM05D006756 ORTHO05D001869 5.4e-08 63.5 253 30.0
AL3G22120 Arabidopsis lyrata HOM05D003044 ORTHO05D001869 7.1e-08 63.2 271 26.6
A01p41560 Brassica napus HOM05D003044 ORTHO05D001869 9.3e-08 62.8 269 26.4
Glyma.06G217700 Glycine max HOM05D006756 ORTHO05D001869 1.2e-07 62.4 263 28.9
CAN.G143.56 Capsicum annuum HOM05D003044 ORTHO05D001869 2.7e-07 61.2 235 29.8
MD02G1257800 Malus domestica HOM05D003044 ORTHO05D001869 4.6e-07 60.5 276 28.3
TWI15G1087 Tripterygium wilfordii HOM05D003044 ORTHO05D001869 4.6e-07 60.5 236 28.0
MD00G1205700 Malus domestica HOM05D005642 ORTHO05D006672 7.9e-07 59.7 78 51.3
CARHR085230 Cardamine hirsuta HOM05D003044 ORTHO05D001869 1.0e-06 59.3 282 25.9
Haze_03430 Corylus avellana HOM05D003044 ORTHO05D001869 1.0e-06 59.3 265 27.9
HanXRQChr06g0180441 Helianthus annuus HOM05D006756 ORTHO05D001869 1.3e-06 58.9 256 30.9
Sp3g08960 Schrenkiella parvula HOM05D003044 ORTHO05D001869 1.3e-06 58.9 272 25.0
Migut.F01554 Erythranthe guttata HOM05D003044 ORTHO05D001869 2.3e-06 58.2 242 28.9
SGA_v2.0_scaffold169G38591 Striga asiatica HOM05D005642 ORTHO05D006672 2.3e-06 58.2 225 28.0
Medtr1g040610 Medicago truncatula HOM05D003044 ORTHO05D001869 3.0e-06 57.8 228 31.1
SGA_v2.0_scaffold121G33034 Striga asiatica HOM05D005642 ORTHO05D006672 3.0e-06 57.8 155 31.0
Ciclev10014057m.g Citrus clementina HOM05D003044 ORTHO05D001869 3.9e-06 57.4 238 28.6
Nn2g12064 Nelumbo nucifera HOM05D006756 ORTHO05D001869 3.9e-06 57.4 402 26.1
Dinv36508 Davidia involucrata HOM05D006756 ORTHO05D001869 5.1e-06 57.0 261 28.4
Lj6g0024518 Lotus japonicus HOM05D003044 ORTHO05D001869 6.7e-06 56.6 254 27.6
Lalb_Chr19g0128991 Lupinus albus HOM05D003044 ORTHO05D001869 6.7e-06 56.6 257 27.6
Sopen11g002290 Solanum pennellii HOM05D003044 ORTHO05D001869 6.7e-06 56.6 243 28.4
Cfa010501 Carpinus fangiana HOM05D003044 ORTHO05D001869 8.7e-06 56.2 268 26.9
MD07G1063100 Malus domestica HOM05D003044 ORTHO05D001869 8.7e-06 56.2 227 30.0
Solyc11g006390.2 Solanum lycopersicum HOM05D003044 ORTHO05D001869 8.7e-06 56.2 243 28.4


User provided reference genes

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