Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 5.6e-164 580.9 291 100.0
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 1.7e-157 559.3 291 95.9
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 6.6e-157 557.4 291 95.5
Nitab4.5_0000339g0120 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.9e-148 529.3 291 91.1
Thecc.09G180400 Theobroma cacao HOM05D004410 ORTHO05D006134 1.2e-142 510.0 290 85.5
Gorai.004G025800 Gossypium raimondii HOM05D004410 ORTHO05D006134 1.7e-141 506.1 290 84.8
Duzib170G0185 Durio zibethinus HOM05D004410 ORTHO05D006134 6.6e-141 504.2 290 85.2
Gohir.D08G028700 Gossypium hirsutum HOM05D004410 ORTHO05D006134 1.1e-140 503.4 290 84.1
Rhsim12G0146500 Rhododendron simsii HOM05D004410 ORTHO05D006134 1.1e-140 503.4 291 84.2
MSTRG.4318 Avicennia marina HOM05D004410 ORTHO05D006134 1.9e-140 502.7 290 85.5
Oeu038397.1 Olea europaea HOM05D004410 ORTHO05D006134 7.3e-140 500.7 290 85.5
Gohir.A08G018100 Gossypium hirsutum HOM05D004410 ORTHO05D006134 2.1e-139 499.2 290 83.4
COL.COLO4_23558 Corchorus olitorius HOM05D004410 ORTHO05D006134 6.2e-139 497.7 290 83.4
GSVIVG01010906001 Vitis vinifera HOM05D004410 ORTHO05D006134 8.1e-139 497.3 290 83.4
Dinv26445 Davidia involucrata HOM05D004410 ORTHO05D006134 1.8e-138 496.1 291 84.5
Lj5C681T1 Lonicera japonica HOM05D004410 ORTHO05D006134 5.3e-138 494.6 292 84.6
TAR626G0361 Trochodendron aralioides HOM05D004410 ORTHO05D006134 5.3e-138 494.6 292 83.9
CSS0020745 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 3.4e-137 491.9 291 81.4
Migut.D01496 Erythranthe guttata HOM05D004410 ORTHO05D006134 3.4e-137 491.9 291 83.8
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 5.8e-137 491.1 281 85.4
Eucgr.L02823 Eucalyptus grandis HOM05D004410 ORTHO05D006134 7.6e-137 490.7 290 84.5
Eucgr.C02260 Eucalyptus grandis HOM05D004410 ORTHO05D006134 1.3e-136 490.0 290 84.1
Ciclev10009088m.g Citrus clementina HOM05D004410 ORTHO05D006134 1.7e-136 489.6 290 82.8
Cpa.g.sc95.31 Carica papaya HOM05D004410 ORTHO05D006134 4.9e-136 488.0 290 82.1
Lj7C624G8 Lonicera japonica HOM05D004410 ORTHO05D006134 1.1e-135 486.9 292 83.2
Potri.001G338700 Populus trichocarpa HOM05D004410 ORTHO05D006134 1.9e-135 486.1 290 81.7
Cfa005486 Carpinus fangiana HOM05D004410 ORTHO05D006134 2.4e-135 485.7 290 81.4
CiPaw.08G034000 Carya illinoinensis HOM05D004410 ORTHO05D006134 7.1e-135 484.2 290 80.0
Manes.06G021200 Manihot esculenta HOM05D004410 ORTHO05D006134 2.1e-134 482.6 290 82.4
Cc09_g07700 Coffea canephora HOM05D004410 ORTHO05D006134 2.7e-134 482.3 290 82.1
Potri.018G049800 Populus trichocarpa HOM05D004410 ORTHO05D006134 2.7e-134 482.3 290 81.4
EL10Ac8g18319 Beta vulgaris HOM05D004410 ORTHO05D006134 1.0e-133 480.3 290 81.4
THA.LOC104817784 Tarenaya hassleriana HOM05D004410 ORTHO05D006134 1.0e-133 480.3 292 82.2
Cfa013429 Carpinus fangiana HOM05D004410 ORTHO05D006134 1.8e-133 479.6 290 80.3
CSS0004658 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 2.3e-133 479.2 291 80.4
RcHm_v2.0_Chr4g0400231 Rosa chinensis HOM05D004410 ORTHO05D006134 2.3e-133 479.2 291 80.4
Peaxi162Scf00171g00233 Petunia axillaris HOM05D004410 ORTHO05D006134 3.0e-133 478.8 268 87.3
HanXRQChr06g0179561 Helianthus annuus HOM05D004410 ORTHO05D006134 3.9e-133 478.4 290 81.0
CsaV3_5G008380 Cucumis sativus L. HOM05D004410 ORTHO05D006134 5.1e-133 478.0 290 80.3
MELO3C008596.2 Cucumis melo HOM05D004410 ORTHO05D006134 8.7e-133 477.2 290 80.3
Sc14g0001390 Simmondsia chinensis HOM05D004410 ORTHO05D006134 8.7e-133 477.2 290 80.3
Oeu016123.1 Olea europaea HOM05D004410 ORTHO05D006134 1.1e-132 476.9 319 76.8
Ah.14g083650 Amaranthus hybridus HOM05D004410 ORTHO05D006134 3.3e-132 475.3 290 80.7
PGR044G0126 Punica granatum HOM05D004410 ORTHO05D006134 3.3e-132 475.3 321 76.6
CANSAT56G1932 Cannabis sativa HOM05D004410 ORTHO05D006134 5.6e-132 474.6 292 79.5
Sabra03G0001500 Salix brachista HOM05D004410 ORTHO05D006134 7.4e-132 474.2 304 78.3
PGSC0003DMG400027051 Solanum tuberosum HOM05D004410 ORTHO05D006134 7.4e-132 474.2 291 84.2
PSO210G4717 Papaver somniferum HOM05D004410 ORTHO05D006134 1.1e-130 470.3 292 79.1
Hund26318 Selenicereus undatus HOM05D004410 ORTHO05D006134 1.1e-130 470.3 290 77.9
MELO3C008923.2 Cucumis melo HOM05D004410 ORTHO05D006134 2.4e-130 469.2 290 78.6
PSO210G0218 Papaver somniferum HOM05D004410 ORTHO05D006134 1.2e-129 466.8 292 78.8
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 2.0e-129 466.1 295 77.6
Nn8g40987 Nelumbo nucifera HOM05D004410 ORTHO05D006134 2.0e-129 466.1 271 84.9
ECA236G3126 Erigeron canadensis HOM05D004410 ORTHO05D006134 4.5e-129 464.9 290 79.7
QL11p004818 Quercus lobata HOM05D004410 ORTHO05D006134 4.5e-129 464.9 289 80.3
AUR62033248 Chenopodium quinoa HOM05D004410 ORTHO05D006134 2.9e-128 462.2 290 79.0
Lalb_Chr07g0180591 Lupinus albus HOM05D004410 ORTHO05D006134 2.9e-128 462.2 290 78.3
TWI36G0301 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 2.9e-128 462.2 290 76.9
Aqoxy3G03862 Aquilegia oxysepala HOM05D004410 ORTHO05D006134 4.9e-128 461.5 291 78.4
TWI75G1515 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 1.1e-127 460.3 324 71.3
arahy.Tifrunner.gnm1.ann1.FB81IM Arachis hypogaea HOM05D004410 ORTHO05D006134 9.3e-127 457.2 290 77.6
CDE06G0833 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 1.6e-126 456.4 290 76.6
AUR62021333 Chenopodium quinoa HOM05D004410 ORTHO05D006134 2.1e-126 456.1 290 78.3
arahy.Tifrunner.gnm1.ann1.2H7I9L Arachis hypogaea HOM05D004410 ORTHO05D006134 3.5e-126 455.3 290 77.2
SalBow8G1532 Salvia bowleyana HOM05D004410 ORTHO05D006134 4.6e-126 454.9 291 78.0
AL8G33250 Arabidopsis lyrata HOM05D004410 ORTHO05D006134 1.8e-125 453.0 290 77.9
Glyma.17G060900 Glycine max HOM05D004410 ORTHO05D006134 8.7e-125 450.7 290 76.2
Thhalv10014295m.g Eutrema salsugineum HOM05D004410 ORTHO05D006134 1.9e-124 449.5 290 78.3
Sed0003098 Sechium edule HOM05D004410 ORTHO05D006134 1.3e-123 446.8 290 75.5
FvH4_4g07620 Fragaria vesca HOM05D004410 ORTHO05D006134 3.7e-123 445.3 291 75.3
Zm00001eb258180 Zea mays HOM05D004410 ORTHO05D006134 6.2e-123 444.5 294 72.4
Carub.0008s1778 Capsella rubella HOM05D004410 ORTHO05D006134 3.1e-122 442.2 290 75.5
FAN22G1351 Fragaria x ananassa HOM05D004410 ORTHO05D006134 5.3e-122 441.4 291 74.2
Sabra03G0004700 Salix brachista HOM05D004410 ORTHO05D006134 5.3e-122 441.4 323 70.6
unitig_26.g9274 Utricularia gibba HOM05D004410 ORTHO05D006134 1.2e-121 440.3 290 75.2
VMungo1215G0063 Vigna mungo HOM05D004410 ORTHO05D006134 1.5e-121 439.9 291 75.6
FAN07G0604 Fragaria x ananassa HOM05D004410 ORTHO05D006134 2.0e-121 439.5 291 74.2
Ah.09g230150 Amaranthus hybridus HOM05D004410 ORTHO05D006134 3.4e-121 438.7 290 75.9
CARHR271080 Cardamine hirsuta HOM05D004410 ORTHO05D006134 7.6e-121 437.6 292 73.6
Os02g0804300 Oryza sativa ssp. japonica HOM05D004410 ORTHO05D006134 1.3e-120 436.8 296 71.6
vmacro16466 Vaccinium macrocarpon HOM05D004410 ORTHO05D006134 1.7e-120 436.4 386 61.9
Sp6g19010 Schrenkiella parvula HOM05D004410 ORTHO05D006134 4.9e-120 434.9 291 75.9
AT5G57280 Arabidopsis thaliana HOM05D004410 ORTHO05D006134 1.1e-119 433.7 290 74.1
Aa31sc36G40 Aethionema arabicum HOM05D004410 ORTHO05D006134 1.4e-119 433.3 295 75.3
FAN17G1447 Fragaria x ananassa HOM05D004410 ORTHO05D006134 4.2e-119 431.8 309 70.6
CANSAT21G0708 Cannabis sativa HOM05D004410 ORTHO05D006134 7.1e-119 431.0 291 72.9
FAN12G4072 Fragaria x ananassa HOM05D004410 ORTHO05D006134 7.1e-119 431.0 311 70.1
SEGI_20363 Sequoiadendron giganteum HOM05D004410 ORTHO05D006134 3.5e-118 428.7 290 72.4
ClCG11G007510 Citrullus lanatus HOM05D004410 ORTHO05D006134 2.3e-117 426.0 290 74.5
C03p15070 Brassica napus HOM05D004410 ORTHO05D006134 1.1e-116 423.7 290 73.4
BolC3t13949H Brassica oleracea HOM05D004410 ORTHO05D006134 1.1e-116 423.7 290 73.4
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 8.2e-115 417.5 283 73.5
TPR.G5373 Trifolium pratense HOM05D004410 ORTHO05D006134 4.1e-114 415.2 292 73.3
MD13G1245300 Malus domestica HOM05D004410 ORTHO05D006134 1.2e-113 413.7 291 70.8
Nitab4.5_0003040g0070 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.5e-113 413.3 290 74.5
BcaB05g22331 Brassica carinata HOM05D004410 ORTHO05D006134 2.6e-113 412.5 290 72.4
CANSAT78G0037 Cannabis sativa HOM05D004410 ORTHO05D006134 4.5e-113 411.8 290 71.0
CANSAT78G1648 Cannabis sativa HOM05D004410 ORTHO05D006134 4.5e-113 411.8 290 71.0
Haze_21974 Corylus avellana HOM05D004410 ORTHO05D006134 7.7e-113 411.0 235 83.4
Phvul.003G141775 Phaseolus vulgaris HOM05D004410 ORTHO05D006134 1.7e-112 409.8 290 70.7
Prupe.1G079400 Prunus persica HOM05D004410 ORTHO05D006134 1.4e-111 406.8 291 70.1
CANSAT78G1079 Cannabis sativa HOM05D004410 ORTHO05D006134 1.9e-111 406.4 290 70.0
Lj3g0017980 Lotus japonicus HOM05D004410 ORTHO05D006134 2.1e-110 402.9 290 69.7
Nitab4.5_0000782g0050 Nicotiana tabacum HOM05D004410 ORTHO05D006134 4.6e-110 401.7 297 72.1
Lj3g0011551 Lotus japonicus HOM05D004410 ORTHO05D006134 7.9e-110 401.0 291 70.4
SGA_v2.0_scaffold36G14352 Striga asiatica HOM05D004410 ORTHO05D006134 1.8e-109 399.8 229 85.6
MD16G1253000 Malus domestica HOM05D004410 ORTHO05D006134 5.1e-109 398.3 292 68.8
Mapoly0020s0093 Marchantia polymorpha HOM05D004410 ORTHO05D006134 8.8e-109 397.5 290 69.7
A10p17910 Brassica napus HOM05D004410 ORTHO05D006134 9.7e-108 394.0 290 70.0
AagrBONN_evm.TU.Sc2ySwM_344.4914 Anthoceros agrestis HOM05D004410 ORTHO05D006134 2.2e-107 392.9 290 68.3
Psat0s4042g0040 Pisum sativum HOM05D004410 ORTHO05D006134 2.2e-107 392.9 291 68.4
A03p12910 Brassica napus HOM05D004410 ORTHO05D006134 3.7e-107 392.1 290 69.7
Pp3c12_7620 Physcomitrium patens HOM05D004410 ORTHO05D006134 1.8e-106 389.8 295 67.5
Medtr4g007420 Medicago truncatula HOM05D004410 ORTHO05D006134 6.5e-104 381.3 290 67.9
Glyma.13G099200 Glycine max HOM05D004410 ORTHO05D006134 8.5e-104 380.9 290 66.9
SMO367G1042 Selaginella moellendorffii HOM05D004410 ORTHO05D006134 7.2e-103 377.9 298 64.8
Actinidia40404 Actinidia chinensis HOM05D004410 ORTHO05D006134 5.1e-101 371.7 293 66.6
Dinv25402 Davidia involucrata HOM05D004410 ORTHO05D006134 4.1e-98 362.1 208 86.1
ATR0561G198 Amborella trichopoda HOM05D004410 ORTHO05D006134 2.0e-97 359.8 225 76.4
SGA_v2.0_scaffold172G39079 Striga asiatica HOM05D004410 ORTHO05D006134 1.9e-95 353.2 189 89.9
Atru.chr12.1677 Acer truncatum HOM05D004410 ORTHO05D006134 4.2e-95 352.1 290 65.9
TPR.G26767 Trifolium pratense HOM05D004410 ORTHO05D006134 2.1e-94 349.7 291 63.6
Medtr4g127640 Medicago truncatula HOM05D004410 ORTHO05D006134 8.8e-93 344.4 239 73.2
CAN.G65.105 Capsicum annuum HOM05D004410 ORTHO05D006134 5.7e-92 341.7 184 91.3
BraA03t10599Z Brassica rapa HOM05D004410 ORTHO05D006134 1.7e-91 340.1 260 68.1
CANSAT78G0098 Cannabis sativa HOM05D004410 ORTHO05D006134 1.3e-88 330.5 270 63.3
Cre09.g398104 Chlamydomonas reinhardtii HOM05D004410 ORTHO05D006134 2.5e-87 326.2 285 59.3
CBR_g3667 Chara braunii HOM05D004410 ORTHO05D006134 2.6e-84 316.2 286 57.7
MCO01G124 Micromonas commoda HOM05D004410 ORTHO05D006134 2.5e-79 299.7 299 54.2
AagrBONN_evm.TU.Sc2ySwM_344.3468 Anthoceros agrestis HOM05D004410 ORTHO05D006134 2.3e-77 293.1 188 72.9
PRCOL_00001013 Prasinoderma coloniale HOM05D004410 ORTHO05D006134 4.0e-77 292.4 298 53.7
Nitab4.5_0000033g0380 Nicotiana tabacum HOM05D004410 ORTHO05D006134 2.0e-76 290.0 291 58.4
MBI13_g31549_MAGBIO Magnolia biondii HOM05D004410 ORTHO05D006134 2.9e-72 276.2 201 68.2
Haze_27417 Corylus avellana HOM05D004410 ORTHO05D006134 9.2e-66 254.6 294 49.0
BcaC03g14169 Brassica carinata HOM05D004410 ORTHO05D006134 8.6e-56 221.5 293 46.8
C02p14420 Brassica napus HOM05D004410 ORTHO05D006134 8.6e-56 221.5 293 46.8
BolC2t07566H Brassica oleracea HOM05D004410 ORTHO05D006134 8.6e-56 221.5 293 46.8
Cfa026974 Carpinus fangiana HOM05D004410 ORTHO05D006134 2.4e-50 203.4 263 48.7
TAR383G0389 Trochodendron aralioides HOM05D004410 ORTHO05D006134 1.7e-43 180.6 103 83.5
CANSAT78G0925 Cannabis sativa HOM05D004410 ORTHO05D006134 2.2e-43 180.3 106 82.1
CANSAT78G2262 Cannabis sativa HOM05D004410 ORTHO05D006134 2.9e-43 179.9 151 60.9
Peaxi162Scf03693g00003 Petunia axillaris HOM05D004410 ORTHO05D006134 3.2e-42 176.4 228 47.4
Ca_20535_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 1.4e-37 161.0 154 57.8
Ca_20536_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 4.0e-37 159.5 154 57.1
Ca_30867_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 4.0e-37 159.5 154 57.1
PSO210G2992 Papaver somniferum HOM05D004410 ORTHO05D006134 3.2e-34 149.8 85 84.7
CDE02G0278 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 1.2e-33 147.9 107 71.0
TAR383G0746 Trochodendron aralioides HOM05D004410 ORTHO05D006134 3.5e-33 146.4 91 78.0
MCO02G313 Micromonas commoda HOM05D004410 ORTHO05D006134 8.7e-32 141.7 194 40.2
C03p79720 Brassica napus HOM05D004410 ORTHO05D027626 1.2e-25 121.3 73 76.7
BolC5t31886H Brassica oleracea HOM05D004410 ORTHO05D027626 1.2e-25 121.3 73 76.7
BcaC05g27254 Brassica carinata HOM05D004410 ORTHO05D027626 4.6e-25 119.4 71 77.5
A02p08640 Brassica napus HOM05D004410 ORTHO05D097625 7.3e-23 112.1 188 41.5
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 3.6e-22 109.8 93 62.4
Glyma.17G179900 Glycine max HOM05D004410 ORTHO05D027626 5.3e-21 105.9 68 69.1
Ca_20516_v3 Cicer arietinum L. HOM05D004410 ORTHO05D147600 3.2e-18 96.7 128 45.3
Psat2g093080 Pisum sativum HOM05D000872 ORTHO05D000777 4.2e-18 96.3 60 71.7
Medtr4g007390 Medicago truncatula HOM05D004410 ORTHO05D006134 1.9e-15 87.4 57 71.9
PSO724G1151 Papaver somniferum HOM05D004410 ORTHO05D305184 1.1e-13 81.6 86 50.0
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 2.4e-13 80.5 232 29.7
GSVIVG01006242001 Vitis vinifera HOM05D004410 ORTHO05D006134 1.1e-10 71.6 56 66.1
GSVIVG01012952001 Vitis vinifera HOM05D004410 ORTHO05D439300 2.1e-06 57.4 44 59.1
CAN.G134.235 Capsicum annuum HOM05D005431 ORTHO05D006762 2.8e-06 57.0 46 69.6
GSVIVG01012950001 Vitis vinifera HOM05D004410 ORTHO05D438744 4.8e-06 56.2 49 57.1


User provided reference genes

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