Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G65.155 Capsicum annuum HOM05D004958 ORTHO05D005983 3.3e-125 451.8 243 100.0
PGSC0003DMG400026921 Solanum tuberosum HOM05D004958 ORTHO05D005983 1.3e-105 386.7 247 86.2
Sopen06g029470 Solanum pennellii HOM05D004958 ORTHO05D005983 7.1e-104 380.9 247 85.0
Nitab4.5_0003113g0020 Nicotiana tabacum HOM05D004958 ORTHO05D005983 1.6e-103 379.8 246 85.0
Solyc06g073120.4 Solanum lycopersicum HOM05D004958 ORTHO05D005983 8.7e-102 374.0 243 84.4
Nitab4.5_0001586g0220 Nicotiana tabacum HOM05D004958 ORTHO05D005983 7.3e-101 370.9 246 82.5
Nitab4.5_0003994g0020 Nicotiana tabacum HOM05D004958 ORTHO05D005983 9.6e-101 370.5 247 83.0
Nitab4.5_0002553g0040 Nicotiana tabacum HOM05D004958 ORTHO05D005983 1.6e-100 369.8 246 82.1
Peaxi162Scf01294g00034 Petunia axillaris HOM05D004958 ORTHO05D005983 5.8e-98 361.3 243 80.2
MSTRG.1893 Avicennia marina HOM05D004958 ORTHO05D005983 6.2e-84 314.7 242 71.9
CSS0008368 Camellia sinensis var. sinensis HOM05D004958 ORTHO05D005983 6.2e-84 314.7 247 69.2
Migut.E01294 Erythranthe guttata HOM05D004958 ORTHO05D005983 1.2e-82 310.5 244 70.5
SGA_v2.0_scaffold196G40881 Striga asiatica HOM05D004958 ORTHO05D005983 2.0e-82 309.7 244 70.1
Actinidia27408 Actinidia chinensis HOM05D004958 ORTHO05D005983 9.3e-80 300.8 245 68.2
Hma1.2p1_0514F.1_g170070 Hydrangea macrophylla HOM05D004958 ORTHO05D005983 1.0e-78 297.4 239 67.8
DCAR_008420 Daucus carota HOM05D004958 ORTHO05D005983 8.7e-78 294.3 250 64.8
Eucgr.D01919 Eucalyptus grandis HOM05D004958 ORTHO05D005983 3.7e-76 288.9 231 69.3
GSVIVG01019856001 Vitis vinifera HOM05D004958 ORTHO05D005983 6.2e-76 288.1 222 69.4
Hund11528 Selenicereus undatus HOM05D004958 ORTHO05D005983 1.1e-75 287.3 242 64.9
PGR031G1609 Punica granatum HOM05D004958 ORTHO05D005983 5.3e-75 285.0 248 66.1
vmacro13919 Vaccinium macrocarpon HOM05D004958 ORTHO05D005983 1.5e-74 283.5 246 66.7
Lsat_1_v5_gn_6_87641 Lactuca sativa HOM05D004958 ORTHO05D005983 2.0e-74 283.1 251 63.7
Sed0017231 Sechium edule HOM05D004958 ORTHO05D005983 4.5e-74 282.0 245 64.5
Atru.chr12.1358 Acer truncatum HOM05D004958 ORTHO05D005983 5.8e-74 281.6 250 63.2
Potri.001G110000 Populus trichocarpa HOM05D004958 ORTHO05D005983 5.8e-74 281.6 242 64.5
Duzib068G0251 Durio zibethinus HOM05D004958 ORTHO05D005983 1.0e-73 280.8 261 60.2
Thecc.03G271700 Theobroma cacao HOM05D004958 ORTHO05D005983 1.0e-73 280.8 240 63.8
Ah.12g057600 Amaranthus hybridus HOM05D004958 ORTHO05D005983 2.2e-73 279.6 243 62.1
VMungo0331G1538 Vigna mungo HOM05D004958 ORTHO05D005983 4.9e-73 278.5 231 64.5
Prupe.6G131000 Prunus persica HOM05D004958 ORTHO05D005983 6.5e-73 278.1 242 64.5
Ciclev10021851m.g Citrus clementina HOM05D004958 ORTHO05D005983 8.4e-73 277.7 251 61.0
ClCG08G000800 Citrullus lanatus HOM05D004958 ORTHO05D005983 1.9e-72 276.6 245 62.9
RcHm_v2.0_Chr5g0045251 Rosa chinensis HOM05D004958 ORTHO05D005983 5.5e-72 275.0 246 62.2
MELO3C019927.2 Cucumis melo HOM05D004958 ORTHO05D005983 2.7e-71 272.7 245 62.9
Gohir.D11G021000 Gossypium hirsutum HOM05D004958 ORTHO05D005983 2.7e-71 272.7 209 68.4
Gohir.A11G021300 Gossypium hirsutum HOM05D004958 ORTHO05D005983 4.6e-71 271.9 218 67.0
Manes.01G066700 Manihot esculenta HOM05D004958 ORTHO05D005983 4.6e-71 271.9 248 59.3
FvH4_7g07500 Fragaria vesca HOM05D004958 ORTHO05D005983 6.1e-71 271.6 246 60.6
Gorai.007G022300 Gossypium raimondii HOM05D004958 ORTHO05D005983 6.1e-71 271.6 209 67.9
Phvul.010G049100 Phaseolus vulgaris HOM05D004958 ORTHO05D005983 1.8e-70 270.0 222 64.0
Glyma.07G082900 Glycine max HOM05D004958 ORTHO05D005983 3.0e-70 269.2 212 65.6
MD03G1146200 Malus domestica HOM05D004958 ORTHO05D005983 5.1e-70 268.5 237 63.3
FAN03G3010 Fragaria x ananassa HOM05D004958 ORTHO05D005983 1.5e-69 266.9 246 59.8
FAN06G2073 Fragaria x ananassa HOM05D004958 ORTHO05D005983 1.5e-69 266.9 246 60.2
FAN10G1939 Fragaria x ananassa HOM05D004958 ORTHO05D005983 1.5e-69 266.9 246 60.2
Nn6g34244 Nelumbo nucifera HOM05D004958 ORTHO05D005983 1.9e-69 266.5 242 59.9
Lj3g0000848 Lotus japonicus HOM05D004958 ORTHO05D005983 2.5e-69 266.2 210 65.7
FvH4_3g25070 Fragaria vesca HOM05D000097 ORTHO05D005983 5.7e-69 265.0 220 65.0
Phvul.009G080900 Phaseolus vulgaris HOM05D004958 ORTHO05D005983 1.3e-68 263.8 223 63.2
Ca_24641_v3 Cicer arietinum L. HOM05D004958 ORTHO05D005983 2.8e-68 262.7 248 58.1
Medtr5g058150 Medicago truncatula HOM05D004958 ORTHO05D005983 2.8e-68 262.7 210 64.3
CsaV3_5G039810 Cucumis sativus L. HOM05D004958 ORTHO05D005983 8.2e-68 261.2 276 55.8
Ca_05359_v3 Cicer arietinum L. HOM05D004958 ORTHO05D005983 1.8e-67 260.0 248 58.1
FAN01G2068 Fragaria x ananassa HOM05D004958 ORTHO05D005983 3.1e-67 259.2 239 59.8
Psat0s646g0120 Pisum sativum HOM05D004958 ORTHO05D005983 3.1e-67 259.2 210 63.8
arahy.Tifrunner.gnm1.ann1.BCQ50G Arachis hypogaea HOM05D004958 ORTHO05D005983 4.1e-67 258.8 212 64.2
Lalb_Chr12g0208371 Lupinus albus HOM05D004958 ORTHO05D005983 4.1e-67 258.8 246 58.9
Lalb_Chr12g0208451 Lupinus albus HOM05D004958 ORTHO05D005983 4.1e-67 258.8 246 58.9
unitig_899.g14861 Utricularia gibba HOM05D004958 ORTHO05D005983 9.0e-67 257.7 263 57.8
ECA240G3664 Erigeron canadensis HOM05D004958 ORTHO05D005983 3.4e-66 255.8 252 59.1
Glyma.03G021100 Glycine max HOM05D004958 ORTHO05D005983 1.3e-65 253.8 263 55.1
Lalb_Chr07g0189581 Lupinus albus HOM05D004958 ORTHO05D005983 1.3e-65 253.8 239 57.7
SalBow7G2511 Salvia bowleyana HOM05D004958 ORTHO05D005983 2.2e-65 253.1 211 67.8
Carub.0001s1234 Capsella rubella HOM05D004958 ORTHO05D005983 2.9e-65 252.7 239 60.7
Prupe.8G125000 Prunus persica HOM05D004958 ORTHO05D005983 5.0e-65 251.9 252 58.7
EL10Ac5g12729 Beta vulgaris HOM05D004958 ORTHO05D005983 1.9e-64 250.0 239 60.3
TWI81G1011 Tripterygium wilfordii HOM05D004958 ORTHO05D005983 1.9e-64 250.0 258 56.2
Aqoxy5G02043 Aquilegia oxysepala HOM05D004958 ORTHO05D005983 2.5e-64 249.6 243 59.7
Cc08_g14020 Coffea canephora HOM05D004958 ORTHO05D005983 4.2e-64 248.8 209 67.0
THA.LOC104823571 Tarenaya hassleriana HOM05D004958 ORTHO05D005983 7.2e-64 248.1 212 64.6
Rhsim07G0094600 Rhododendron simsii HOM05D004958 ORTHO05D005983 9.4e-64 247.7 213 68.1
ATR0757G162 Amborella trichopoda HOM05D004958 ORTHO05D005983 1.2e-63 247.3 222 59.9
vmacro12796 Vaccinium macrocarpon HOM05D004958 ORTHO05D005983 3.6e-63 245.7 313 52.1
COL.COLO4_09338 Corchorus olitorius HOM05D001926 ORTHO05D002121 1.0e-62 244.2 215 62.8
MBI11_g40802_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 1.4e-62 243.8 211 62.6
TPR.G27805 Trifolium pratense HOM05D004958 ORTHO05D005983 1.4e-62 243.8 211 60.2
HPP92_003759 Vanilla planifolia HOM05D004958 ORTHO05D005983 2.5e-61 239.6 218 60.1
AL1G24110 Arabidopsis lyrata HOM05D004958 ORTHO05D005983 3.3e-61 239.2 240 58.3
PSO782G2900 Papaver somniferum HOM05D004958 ORTHO05D005983 5.7e-61 238.4 217 59.0
Medtr6g075250 Medicago truncatula HOM05D004958 ORTHO05D005983 7.4e-61 238.0 250 52.4
PSO478G4928 Papaver somniferum HOM05D004958 ORTHO05D005983 8.2e-60 234.6 270 51.5
SEGI_09748 Sequoiadendron giganteum HOM05D004958 ORTHO05D005983 3.1e-59 232.6 209 58.4
AT1G12650 Arabidopsis thaliana HOM05D004958 ORTHO05D005983 9.1e-59 231.1 245 57.6
Cfa012106 Carpinus fangiana HOM05D004958 ORTHO05D005983 9.1e-59 231.1 254 54.3
MBI11_g41127_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 1.2e-58 230.7 198 63.1
Os09g0525200 Oryza sativa ssp. japonica HOM05D004958 ORTHO05D005983 1.5e-58 230.3 214 61.2
FAN11G1832 Fragaria x ananassa HOM05D000097 ORTHO05D005983 8.5e-57 224.6 226 57.1
MBI11_g31491_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 2.5e-56 223.0 228 55.7
CARHR012940 Cardamine hirsuta HOM05D004958 ORTHO05D005983 1.6e-55 220.3 205 56.1
Sp1g11240 Schrenkiella parvula HOM05D004958 ORTHO05D005983 4.7e-55 218.8 216 55.1
Zm00001eb103160 Zea mays HOM05D004958 ORTHO05D005983 1.4e-54 217.2 213 57.7
QL12p017317 Quercus lobata HOM05D004958 ORTHO05D005983 5.1e-54 215.3 329 42.9
Pp3c15_19260 Physcomitrium patens HOM05D004958 ORTHO05D005983 1.5e-53 213.8 212 53.3
AUR62017291 Chenopodium quinoa HOM05D004958 ORTHO05D005983 2.0e-53 213.4 171 65.5
Haze_20475 Corylus avellana HOM05D004958 ORTHO05D005983 1.7e-52 210.3 311 44.7
BcaB08g34261 Brassica carinata HOM05D004958 ORTHO05D005983 2.8e-52 209.5 182 59.3
BolC8t52265H Brassica oleracea HOM05D004958 ORTHO05D005983 1.4e-51 207.2 181 58.6
MD11G1165500 Malus domestica HOM05D004958 ORTHO05D005983 2.4e-51 206.5 318 45.3
Sc22g0000230 Simmondsia chinensis HOM05D004958 ORTHO05D005983 3.1e-51 206.1 195 60.5
Mapoly0004s0034 Marchantia polymorpha HOM05D004958 ORTHO05D005983 4.1e-51 205.7 227 51.1
AagrBONN_evm.TU.Sc2ySwM_362.2285 Anthoceros agrestis HOM05D004958 ORTHO05D005983 5.3e-51 205.3 210 51.0
A09p63740 Brassica napus HOM05D004958 ORTHO05D005983 7.0e-51 204.9 181 57.5
Aa31LG1G2030 Aethionema arabicum HOM05D004958 ORTHO05D005983 3.5e-50 202.6 202 57.4
Sabra01G0083200 Salix brachista HOM05D004958 ORTHO05D005983 5.9e-50 201.8 211 55.5
C08p47240 Brassica napus HOM05D004958 ORTHO05D005983 7.7e-50 201.4 189 56.1
Dinv39007 Davidia involucrata HOM05D004958 ORTHO05D005983 1.7e-49 200.3 156 69.9
BraA09t41722Z Brassica rapa HOM05D004958 ORTHO05D005983 5.0e-49 198.7 261 47.1
SMO228G0196 Selaginella moellendorffii HOM05D004958 ORTHO05D005983 1.9e-48 196.8 203 53.2
CiPaw.12G097900 Carya illinoinensis HOM05D004958 ORTHO05D005983 4.2e-48 195.7 282 44.7
BcaC07g41688 Brassica carinata HOM05D004958 ORTHO05D005983 7.2e-48 194.9 177 57.6
Thhalv10008688m.g Eutrema salsugineum HOM05D004958 ORTHO05D005983 1.2e-47 194.1 211 56.4
AUR62010651 Chenopodium quinoa HOM05D004958 ORTHO05D005983 6.1e-47 191.8 216 52.8
MBI04_g02075_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 8.0e-47 191.4 250 49.6
MBI11_g47761_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 1.0e-46 191.0 170 61.2
MBI11_g41124_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 1.4e-46 190.7 164 63.4
FAN21G2287 Fragaria x ananassa HOM05D000097 ORTHO05D000041 1.3e-44 184.1 143 68.5
Eucgr.L01965 Eucalyptus grandis HOM05D004958 ORTHO05D005983 1.2e-42 177.6 148 66.2
Atru.chr12.1359 Acer truncatum HOM05D004958 ORTHO05D005983 7.2e-40 168.3 250 44.4
CBR_g12215 Chara braunii HOM05D004958 ORTHO05D005983 1.3e-33 147.5 172 48.3
Cre09.g401663 Chlamydomonas reinhardtii HOM05D004958 ORTHO05D005983 1.3e-33 147.5 228 40.4
CDE02G4341 Ceratophyllum demersum HOM05D004958 ORTHO05D005983 3.8e-33 146.0 152 54.6
MBI11_g32389_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 5.4e-27 125.6 222 41.0
Phvul.009G247000 Phaseolus vulgaris HOM05D004958 ORTHO05D005983 7.7e-26 121.7 242 37.6
Zm00001eb297680 Zea mays HOM05D004958 ORTHO05D005983 1.7e-25 120.6 94 64.9
Haze_08945 Corylus avellana HOM05D004958 ORTHO05D005983 2.3e-25 120.2 116 56.9
Aqoxy60s002 Aquilegia oxysepala HOM05D004958 ORTHO05D005983 6.1e-23 112.1 126 56.3
PRCOL_00004135 Prasinoderma coloniale HOM05D004958 ORTHO05D005983 8.9e-22 108.2 171 36.8
SEGI_22925 Sequoiadendron giganteum HOM05D004958 ORTHO05D005983 3.2e-19 99.8 84 63.1
Oeu011662.1 Olea europaea HOM05D004958 ORTHO05D005983 7.0e-19 98.6 105 58.1
Cfa023436 Carpinus fangiana HOM05D004958 ORTHO05D005983 2.3e-17 93.6 233 30.9
QL02p071798 Quercus lobata HOM05D004958 ORTHO05D005983 2.9e-17 93.2 207 37.2
FvH4_3g24970 Fragaria vesca HOM05D004958 ORTHO05D005983 4.3e-16 89.4 81 60.5
TAR636G1581 Trochodendron aralioides HOM05D004958 ORTHO05D005983 7.3e-16 88.6 83 56.6
A09p63730 Brassica napus HOM05D007482 ORTHO05D003038 1.6e-15 87.4 77 59.7
FAN11G3948 Fragaria x ananassa HOM05D004958 ORTHO05D005983 3.1e-14 83.2 213 32.9
MBI11_g47763_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 1.2e-13 81.3 174 37.4
MBI11_g12655_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 9.8e-13 78.2 166 37.3
Zm00001eb297670 Zea mays HOM05D004958 ORTHO05D005983 3.7e-12 76.3 59 59.3
Cpa.g.sc53.73 Carica papaya HOM05D004958 ORTHO05D005983 2.7e-10 70.1 50 66.0
Zm00001eb199630 Zea mays HOM05D004958 ORTHO05D005983 3.5e-10 69.7 56 57.1
Zm00001eb282240 Zea mays HOM05D004142 ORTHO05D005411 8.6e-09 65.1 55 67.3
Zm00001eb112060 Zea mays HOM05D004142 ORTHO05D005983 4.3e-08 62.8 55 65.5
Aqoxy107s001 Aquilegia oxysepala HOM05D004958 ORTHO05D005983 7.3e-08 62.0 76 50.0
C08p47230 Brassica napus HOM05D007482 ORTHO05D003038 2.3e-06 57.0 77 46.8


User provided reference genes

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