Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G65.105 Capsicum annuum HOM05D004410 ORTHO05D006134 1.6e-109 399.4 199 100.0
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 5.1e-92 341.3 184 91.3
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 7.4e-91 337.4 184 90.2
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 2.8e-90 335.5 184 89.7
Peaxi162Scf00171g00233 Petunia axillaris HOM05D004410 ORTHO05D006134 8.4e-87 323.9 187 84.0
MSTRG.4318 Avicennia marina HOM05D004410 ORTHO05D006134 1.1e-83 313.5 187 82.4
Duzib170G0185 Durio zibethinus HOM05D004410 ORTHO05D006134 3.3e-83 312.0 187 80.2
Oeu038397.1 Olea europaea HOM05D004410 ORTHO05D006134 4.3e-83 311.6 184 81.5
Thecc.09G180400 Theobroma cacao HOM05D004410 ORTHO05D006134 9.6e-83 310.5 184 80.4
Rhsim12G0146500 Rhododendron simsii HOM05D004410 ORTHO05D006134 3.7e-82 308.5 184 79.9
Cfa005486 Carpinus fangiana HOM05D004410 ORTHO05D006134 8.1e-82 307.4 187 78.6
Gohir.D08G028700 Gossypium hirsutum HOM05D004410 ORTHO05D006134 8.1e-82 307.4 184 78.3
Gorai.004G025800 Gossypium raimondii HOM05D004410 ORTHO05D006134 1.4e-81 306.6 184 77.7
Nitab4.5_0000339g0120 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.8e-81 306.2 184 83.7
COL.COLO4_23558 Corchorus olitorius HOM05D004410 ORTHO05D006134 4.0e-81 305.1 184 78.3
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 4.0e-81 305.1 184 79.9
GSVIVG01010906001 Vitis vinifera HOM05D004410 ORTHO05D006134 4.0e-81 305.1 187 78.6
Dinv26445 Davidia involucrata HOM05D004410 ORTHO05D006134 9.0e-81 303.9 185 80.0
Cfa013429 Carpinus fangiana HOM05D004410 ORTHO05D006134 1.2e-80 303.5 187 77.5
Sc14g0001390 Simmondsia chinensis HOM05D004410 ORTHO05D006134 1.2e-80 303.5 185 78.4
Gohir.A08G018100 Gossypium hirsutum HOM05D004410 ORTHO05D006134 2.0e-80 302.8 184 77.2
TAR626G0361 Trochodendron aralioides HOM05D004410 ORTHO05D006134 2.0e-80 302.8 184 78.3
Haze_21974 Corylus avellana HOM05D004410 ORTHO05D006134 2.6e-80 302.4 183 77.6
ClCG11G007510 Citrullus lanatus HOM05D004410 ORTHO05D006134 3.4e-80 302.0 187 75.4
Nn8g40987 Nelumbo nucifera HOM05D004410 ORTHO05D006134 3.4e-80 302.0 184 79.3
CiPaw.08G034000 Carya illinoinensis HOM05D004410 ORTHO05D006134 5.8e-80 301.2 184 76.6
MELO3C008596.2 Cucumis melo HOM05D004410 ORTHO05D006134 1.0e-79 300.4 184 76.6
THA.LOC104817784 Tarenaya hassleriana HOM05D004410 ORTHO05D006134 2.2e-79 299.3 181 79.0
CsaV3_5G008380 Cucumis sativus L. HOM05D004410 ORTHO05D006134 3.8e-79 298.5 184 76.1
Manes.06G021200 Manihot esculenta HOM05D004410 ORTHO05D006134 4.9e-79 298.1 184 77.7
PGSC0003DMG400027051 Solanum tuberosum HOM05D004410 ORTHO05D006134 6.5e-79 297.7 159 90.6
MELO3C008923.2 Cucumis melo HOM05D004410 ORTHO05D006134 8.4e-79 297.4 184 75.5
Migut.D01496 Erythranthe guttata HOM05D004410 ORTHO05D006134 8.4e-79 297.4 188 78.2
HanXRQChr06g0179561 Helianthus annuus HOM05D004410 ORTHO05D006134 1.9e-78 296.2 187 75.9
EL10Ac8g18319 Beta vulgaris HOM05D004410 ORTHO05D006134 2.5e-78 295.8 187 76.5
CSS0020745 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 3.2e-78 295.4 184 76.1
Ciclev10009088m.g Citrus clementina HOM05D004410 ORTHO05D006134 4.2e-78 295.0 184 76.6
Eucgr.C02260 Eucalyptus grandis HOM05D004410 ORTHO05D006134 4.2e-78 295.0 187 77.5
Eucgr.L02823 Eucalyptus grandis HOM05D004410 ORTHO05D006134 4.2e-78 295.0 187 77.5
Potri.018G049800 Populus trichocarpa HOM05D004410 ORTHO05D006134 2.7e-77 292.4 184 77.2
Cc09_g07700 Coffea canephora HOM05D004410 ORTHO05D006134 4.6e-77 291.6 187 75.9
Lj5C681T1 Lonicera japonica HOM05D004410 ORTHO05D006134 6.0e-77 291.2 185 77.8
Oeu016123.1 Olea europaea HOM05D004410 ORTHO05D006134 7.9e-77 290.8 216 69.0
Potri.001G338700 Populus trichocarpa HOM05D004410 ORTHO05D006134 7.9e-77 290.8 186 74.2
Cpa.g.sc95.31 Carica papaya HOM05D004410 ORTHO05D006134 1.8e-76 289.7 188 73.4
Lj7C624G8 Lonicera japonica HOM05D004410 ORTHO05D006134 1.8e-76 289.7 172 79.7
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 6.7e-76 287.7 170 77.1
QL11p004818 Quercus lobata HOM05D004410 ORTHO05D006134 6.7e-76 287.7 184 76.1
SGA_v2.0_scaffold36G14352 Striga asiatica HOM05D004410 ORTHO05D006134 1.1e-75 287.0 177 78.5
Ah.14g083650 Amaranthus hybridus HOM05D004410 ORTHO05D006134 1.5e-75 286.6 187 74.3
Sabra03G0001500 Salix brachista HOM05D004410 ORTHO05D006134 1.5e-75 286.6 200 71.0
RcHm_v2.0_Chr4g0400231 Rosa chinensis HOM05D004410 ORTHO05D006134 2.5e-75 285.8 187 74.3
Hund26318 Selenicereus undatus HOM05D004410 ORTHO05D006134 2.5e-75 285.8 187 72.7
Aqoxy3G03862 Aquilegia oxysepala HOM05D004410 ORTHO05D006134 3.3e-75 285.4 172 77.9
CSS0004658 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 3.3e-75 285.4 184 75.0
CANSAT56G1932 Cannabis sativa HOM05D004410 ORTHO05D006134 1.3e-74 283.5 184 73.4
ECA236G3126 Erigeron canadensis HOM05D004410 ORTHO05D006134 1.6e-74 283.1 187 73.3
TWI36G0301 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 1.6e-74 283.1 184 71.7
Carub.0008s1778 Capsella rubella HOM05D004410 ORTHO05D006134 2.8e-74 282.3 188 72.9
PSO210G4717 Papaver somniferum HOM05D004410 ORTHO05D006134 4.8e-74 281.6 186 73.1
unitig_26.g9274 Utricularia gibba HOM05D004410 ORTHO05D006134 1.4e-73 280.0 174 77.0
SalBow8G1532 Salvia bowleyana HOM05D004410 ORTHO05D006134 5.3e-73 278.1 171 77.2
AL8G33250 Arabidopsis lyrata HOM05D004410 ORTHO05D006134 6.9e-73 277.7 188 72.3
PSO210G0218 Papaver somniferum HOM05D004410 ORTHO05D006134 6.9e-73 277.7 186 72.6
PGR044G0126 Punica granatum HOM05D004410 ORTHO05D006134 1.2e-72 276.9 218 66.5
Lalb_Chr07g0180591 Lupinus albus HOM05D004410 ORTHO05D006134 1.5e-72 276.6 184 72.8
VMungo1215G0063 Vigna mungo HOM05D004410 ORTHO05D006134 2.6e-72 275.8 174 74.7
Sed0003098 Sechium edule HOM05D004410 ORTHO05D006134 7.6e-72 274.2 185 70.8
CARHR271080 Cardamine hirsuta HOM05D004410 ORTHO05D006134 1.7e-71 273.1 185 71.4
Zm00001eb258180 Zea mays HOM05D004410 ORTHO05D006134 1.7e-71 273.1 177 70.6
Ah.09g230150 Amaranthus hybridus HOM05D004410 ORTHO05D006134 2.2e-71 272.7 183 72.1
CDE06G0833 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 2.2e-71 272.7 187 69.5
AUR62033248 Chenopodium quinoa HOM05D004410 ORTHO05D006134 2.2e-71 272.7 187 70.6
Phvul.003G141775 Phaseolus vulgaris HOM05D004410 ORTHO05D006134 3.8e-71 271.9 172 74.4
TWI75G1515 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 5.0e-71 271.6 218 61.9
arahy.Tifrunner.gnm1.ann1.FB81IM Arachis hypogaea HOM05D004410 ORTHO05D006134 1.1e-70 270.4 184 71.2
AT5G57280 Arabidopsis thaliana HOM05D004410 ORTHO05D006134 1.4e-70 270.0 188 70.2
Thhalv10014295m.g Eutrema salsugineum HOM05D004410 ORTHO05D006134 1.4e-70 270.0 188 71.8
Os02g0804300 Oryza sativa ssp. japonica HOM05D004410 ORTHO05D006134 1.4e-70 270.0 178 70.2
AUR62021333 Chenopodium quinoa HOM05D004410 ORTHO05D006134 3.2e-70 268.9 187 71.1
arahy.Tifrunner.gnm1.ann1.2H7I9L Arachis hypogaea HOM05D004410 ORTHO05D006134 4.2e-70 268.5 184 70.7
Dinv25402 Davidia involucrata HOM05D004410 ORTHO05D006134 1.6e-69 266.5 154 83.1
Glyma.17G060900 Glycine max HOM05D004410 ORTHO05D006134 1.6e-69 266.5 184 69.6
Sabra03G0004700 Salix brachista HOM05D004410 ORTHO05D006134 3.6e-69 265.4 225 61.3
Medtr4g127640 Medicago truncatula HOM05D004410 ORTHO05D006134 6.1e-69 264.6 186 71.5
MD13G1245300 Malus domestica HOM05D004410 ORTHO05D006134 7.9e-69 264.2 162 75.9
FAN07G0604 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.3e-68 263.5 187 69.0
Prupe.1G079400 Prunus persica HOM05D004410 ORTHO05D006134 1.3e-68 263.5 160 76.9
Lj3g0017980 Lotus japonicus HOM05D004410 ORTHO05D006134 2.3e-68 262.7 167 74.9
Aa31sc36G40 Aethionema arabicum HOM05D004410 ORTHO05D006134 3.9e-68 261.9 188 69.7
FAN22G1351 Fragaria x ananassa HOM05D004410 ORTHO05D006134 6.7e-68 261.2 187 68.4
FvH4_4g07620 Fragaria vesca HOM05D004410 ORTHO05D006134 1.1e-67 260.4 187 67.9
Sp6g19010 Schrenkiella parvula HOM05D004410 ORTHO05D006134 1.5e-67 260.0 175 72.6
ATR0561G198 Amborella trichopoda HOM05D004410 ORTHO05D006134 3.3e-67 258.8 173 71.1
Lj3g0011551 Lotus japonicus HOM05D004410 ORTHO05D006134 4.3e-67 258.5 173 71.7
SEGI_20363 Sequoiadendron giganteum HOM05D004410 ORTHO05D006134 2.2e-66 256.1 187 67.4
A03p12910 Brassica napus HOM05D004410 ORTHO05D006134 2.8e-66 255.8 168 72.6
A10p17910 Brassica napus HOM05D004410 ORTHO05D006134 2.8e-66 255.8 168 72.6
BraA03t10599Z Brassica rapa HOM05D004410 ORTHO05D006134 2.8e-66 255.8 168 72.6
C03p15070 Brassica napus HOM05D004410 ORTHO05D006134 4.8e-66 255.0 166 72.9
BolC3t13949H Brassica oleracea HOM05D004410 ORTHO05D006134 4.8e-66 255.0 166 72.9
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 6.3e-66 254.6 185 66.5
vmacro16466 Vaccinium macrocarpon HOM05D004410 ORTHO05D006134 8.2e-66 254.2 257 55.3
MD16G1253000 Malus domestica HOM05D004410 ORTHO05D006134 2.4e-65 252.7 155 75.5
Mapoly0020s0093 Marchantia polymorpha HOM05D004410 ORTHO05D006134 5.3e-65 251.5 169 69.8
Glyma.13G099200 Glycine max HOM05D004410 ORTHO05D006134 1.5e-64 250.0 158 72.8
FAN17G1447 Fragaria x ananassa HOM05D004410 ORTHO05D006134 2.6e-64 249.2 205 62.4
TPR.G5373 Trifolium pratense HOM05D004410 ORTHO05D006134 4.5e-64 248.4 179 68.2
CANSAT21G0708 Cannabis sativa HOM05D004410 ORTHO05D006134 2.2e-63 246.1 185 64.3
FAN12G4072 Fragaria x ananassa HOM05D004410 ORTHO05D006134 2.2e-63 246.1 207 60.9
SGA_v2.0_scaffold172G39079 Striga asiatica HOM05D004410 ORTHO05D006134 3.8e-63 245.4 137 85.4
AagrBONN_evm.TU.Sc2ySwM_344.4914 Anthoceros agrestis HOM05D004410 ORTHO05D006134 5.0e-63 245.0 184 65.2
BcaB05g22331 Brassica carinata HOM05D004410 ORTHO05D006134 2.5e-62 242.7 174 69.0
Psat0s4042g0040 Pisum sativum HOM05D004410 ORTHO05D006134 4.2e-62 241.9 172 66.9
Pp3c12_7620 Physcomitrium patens HOM05D004410 ORTHO05D006134 5.5e-62 241.5 187 62.6
SMO367G1042 Selaginella moellendorffii HOM05D004410 ORTHO05D006134 1.0e-60 237.3 190 61.1
CANSAT78G1079 Cannabis sativa HOM05D004410 ORTHO05D006134 1.5e-59 233.4 184 63.0
CANSAT78G0037 Cannabis sativa HOM05D004410 ORTHO05D006134 9.7e-59 230.7 184 62.5
CANSAT78G0098 Cannabis sativa HOM05D004410 ORTHO05D006134 9.7e-59 230.7 183 62.3
CANSAT78G1648 Cannabis sativa HOM05D004410 ORTHO05D006134 9.7e-59 230.7 184 62.5
Atru.chr12.1677 Acer truncatum HOM05D004410 ORTHO05D006134 1.3e-58 230.3 182 65.9
Medtr4g007420 Medicago truncatula HOM05D004410 ORTHO05D006134 4.1e-57 225.3 184 63.0
MBI13_g31549_MAGBIO Magnolia biondii HOM05D004410 ORTHO05D006134 1.3e-55 220.3 153 68.0
Cre09.g398104 Chlamydomonas reinhardtii HOM05D004410 ORTHO05D006134 1.5e-51 206.8 172 60.5
TPR.G26767 Trifolium pratense HOM05D004410 ORTHO05D006134 1.5e-51 206.8 185 58.4
AagrBONN_evm.TU.Sc2ySwM_344.3468 Anthoceros agrestis HOM05D004410 ORTHO05D006134 2.6e-51 206.1 137 71.5
CBR_g3667 Chara braunii HOM05D004410 ORTHO05D006134 5.7e-51 204.9 180 57.2
Nitab4.5_0003040g0070 Nicotiana tabacum HOM05D004410 ORTHO05D006134 9.7e-51 204.1 184 59.2
Nitab4.5_0000782g0050 Nicotiana tabacum HOM05D004410 ORTHO05D006134 5.3e-49 198.4 191 57.1
PRCOL_00001013 Prasinoderma coloniale HOM05D004410 ORTHO05D006134 7.2e-46 188.0 191 51.3
MCO01G124 Micromonas commoda HOM05D004410 ORTHO05D006134 1.8e-44 183.3 151 57.6
Peaxi162Scf03693g00003 Petunia axillaris HOM05D004410 ORTHO05D006134 2.8e-42 176.0 102 81.4
Actinidia40404 Actinidia chinensis HOM05D004410 ORTHO05D006134 1.1e-41 174.1 186 52.2
Haze_27417 Corylus avellana HOM05D004410 ORTHO05D006134 3.8e-39 165.6 165 50.3
Cfa026974 Carpinus fangiana HOM05D004410 ORTHO05D006134 8.0e-37 157.9 159 54.1
TAR383G0746 Trochodendron aralioides HOM05D004410 ORTHO05D006134 8.5e-31 137.9 92 72.8
Ca_20535_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 4.4e-27 125.6 132 53.0
Nitab4.5_0000033g0380 Nicotiana tabacum HOM05D004410 ORTHO05D006134 5.7e-27 125.2 87 73.6
Ca_20536_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 1.3e-26 124.0 132 52.3
Ca_30867_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 1.3e-26 124.0 132 52.3
BcaC03g14169 Brassica carinata HOM05D004410 ORTHO05D006134 1.3e-23 114.0 79 65.8
C02p14420 Brassica napus HOM05D004410 ORTHO05D006134 1.3e-23 114.0 79 65.8
BolC2t07566H Brassica oleracea HOM05D004410 ORTHO05D006134 1.3e-23 114.0 79 65.8
MCO02G313 Micromonas commoda HOM05D004410 ORTHO05D006134 1.1e-22 110.9 148 39.9
Glyma.17G179900 Glycine max HOM05D004410 ORTHO05D027626 1.2e-21 107.5 76 64.5
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 3.6e-21 105.9 99 59.6
CANSAT78G2262 Cannabis sativa HOM05D004410 ORTHO05D006134 1.3e-18 97.4 97 54.6
Psat2g093080 Pisum sativum HOM05D000872 ORTHO05D000777 4.1e-17 92.4 60 70.0
Ca_20516_v3 Cicer arietinum L. HOM05D004410 ORTHO05D147600 2.7e-16 89.7 128 44.5
CDE02G0278 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 4.6e-16 89.0 71 63.4
CANSAT78G0925 Cannabis sativa HOM05D004410 ORTHO05D006134 3.0e-15 86.3 54 72.2
BcaC05g27254 Brassica carinata HOM05D004410 ORTHO05D027626 4.3e-14 82.4 52 69.2
C03p79720 Brassica napus HOM05D004410 ORTHO05D027626 4.3e-14 82.4 52 69.2
BolC5t31886H Brassica oleracea HOM05D004410 ORTHO05D027626 4.3e-14 82.4 52 69.2
TAR383G0389 Trochodendron aralioides HOM05D004410 ORTHO05D006134 4.3e-14 82.4 51 72.5
PSO724G1151 Papaver somniferum HOM05D004410 ORTHO05D305184 2.3e-12 76.6 84 47.6
A02p08640 Brassica napus HOM05D004410 ORTHO05D097625 6.0e-08 62.0 36 80.6
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 5.0e-07 58.9 212 27.8
GSVIVG01012952001 Vitis vinifera HOM05D004410 ORTHO05D439300 7.3e-06 55.1 35 65.7


User provided reference genes

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