Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G616.16 Capsicum annuum HOM05D003534 ORTHO05D004911 3.0e-216 755.0 410 100.0
Nitab4.5_0006725g0010 Nicotiana tabacum HOM05D003534 ORTHO05D004911 1.4e-115 420.6 472 56.4
Nitab4.5_0000231g0480 Nicotiana tabacum HOM05D003534 ORTHO05D004911 5.7e-114 415.2 432 58.3
Nitab4.5_0007066g0010 Nicotiana tabacum HOM05D003534 ORTHO05D004911 1.1e-112 411.0 475 55.2
PGSC0003DMG400031553 Solanum tuberosum HOM05D003534 ORTHO05D004911 4.1e-112 409.1 472 54.2
PGSC0003DMG400020972 Solanum tuberosum HOM05D003534 ORTHO05D004911 1.2e-111 407.5 472 54.2
Sopen10g016730 Solanum pennellii HOM05D003534 ORTHO05D004911 1.0e-110 404.4 472 53.8
Solyc10g046930.3 Solanum lycopersicum HOM05D003534 ORTHO05D004911 2.9e-110 402.9 472 53.6
Sopen10g016790 Solanum pennellii HOM05D003534 ORTHO05D004911 4.2e-109 399.1 472 53.4
Peaxi162Scf00314g00224 Petunia axillaris HOM05D003534 ORTHO05D004911 1.9e-93 347.1 425 52.0
Dinv23505 Davidia involucrata HOM05D003534 ORTHO05D004911 1.9e-88 330.5 435 47.1
SalBow3G2606 Salvia bowleyana HOM05D003534 ORTHO05D004911 8.6e-86 321.6 431 48.3
Rhsim11G0178800 Rhododendron simsii HOM05D003534 ORTHO05D004911 7.3e-85 318.5 431 45.9
Cc02_g17370 Coffea canephora HOM05D003534 ORTHO05D004911 9.5e-85 318.2 428 45.3
Oeu011084.1 Olea europaea HOM05D003534 ORTHO05D004911 1.6e-84 317.4 435 45.1
Nitab4.5_0000167g0310 Nicotiana tabacum HOM05D003534 ORTHO05D004911 8.1e-84 315.1 435 46.0
SGA_v2.0_scaffold58G20518 Striga asiatica HOM05D003534 ORTHO05D004911 3.1e-83 313.2 433 45.0
Peaxi162Scf00391g00525 Petunia axillaris HOM05D003534 ORTHO05D004911 4.4e-82 309.3 469 44.6
Psat7g184360 Pisum sativum HOM05D003534 ORTHO05D004911 4.4e-82 309.3 475 44.6
ECA234G0458 Erigeron canadensis HOM05D003534 ORTHO05D004911 9.8e-82 308.1 432 47.0
CSS0034094 Camellia sinensis var. sinensis HOM05D003534 ORTHO05D004911 1.7e-81 307.4 440 45.5
Migut.N01247 Erythranthe guttata HOM05D003534 ORTHO05D004911 1.7e-81 307.4 432 45.4
Nitab4.5_0003010g0010 Nicotiana tabacum HOM05D003534 ORTHO05D004911 2.2e-81 307.0 481 46.4
CAN.G259.5 Capsicum annuum HOM05D003534 ORTHO05D004911 2.9e-81 306.6 465 43.2
MSTRG.27693 Avicennia marina HOM05D003534 ORTHO05D004911 4.9e-81 305.8 433 47.1
PGSC0003DMG400009279 Solanum tuberosum HOM05D003534 ORTHO05D004911 1.1e-80 304.7 431 46.2
Gohir.D02G216500 Gossypium hirsutum HOM05D003534 ORTHO05D004911 1.4e-80 304.3 426 45.3
Gorai.005G244600 Gossypium raimondii HOM05D003534 ORTHO05D004911 1.4e-80 304.3 426 45.3
Gohir.A03G195500 Gossypium hirsutum HOM05D003534 ORTHO05D004911 9.2e-80 301.6 426 45.5
Thecc.02G083000 Theobroma cacao HOM05D003534 ORTHO05D004911 1.2e-79 301.2 435 48.3
TAR376G0939 Trochodendron aralioides HOM05D003534 ORTHO05D004911 1.2e-79 301.2 429 44.3
Eucgr.I01280 Eucalyptus grandis HOM05D003534 ORTHO05D004911 2.1e-79 300.4 437 45.1
Actinidia00534 Actinidia chinensis HOM05D003534 ORTHO05D004911 3.5e-79 299.7 432 44.7
Cpa.g.sc62.164 Carica papaya HOM05D003534 ORTHO05D004911 4.6e-79 299.3 435 44.4
CiPaw.05G066400 Carya illinoinensis HOM05D003534 ORTHO05D004911 7.8e-79 298.5 437 43.5
Sopen11g010770 Solanum pennellii HOM05D003534 ORTHO05D004911 7.8e-79 298.5 434 44.0
VMungo1127G1107 Vigna mungo HOM05D003534 ORTHO05D004911 7.8e-79 298.5 477 41.3
MELO3C023306.2 Cucumis melo HOM05D003534 ORTHO05D004911 2.3e-78 297.0 477 41.1
Lalb_Chr01g0002481 Lupinus albus HOM05D003534 ORTHO05D004911 2.3e-78 297.0 434 43.3
Solyc11g020810.2 Solanum lycopersicum HOM05D003534 ORTHO05D004911 2.3e-78 297.0 434 43.8
QL11p044502 Quercus lobata HOM05D003534 ORTHO05D004911 3.0e-78 296.6 484 41.5
Sed0008343 Sechium edule HOM05D003534 ORTHO05D004911 3.0e-78 296.6 478 41.8
PGR142G3854 Punica granatum HOM05D003534 ORTHO05D004911 3.9e-78 296.2 438 42.7
Ca_20885_v3 Cicer arietinum L. HOM05D003534 ORTHO05D004911 6.6e-78 295.4 433 43.4
Cpa.g.c31087 Carica papaya HOM05D003534 ORTHO05D004911 5.6e-77 292.4 407 45.2
Phvul.011G044300 Phaseolus vulgaris HOM05D003534 ORTHO05D004911 5.6e-77 292.4 476 41.0
TPR.G22546 Trifolium pratense HOM05D003534 ORTHO05D004911 5.6e-77 292.4 478 41.2
Manes.04G089300 Manihot esculenta HOM05D003534 ORTHO05D004911 7.3e-77 292.0 453 46.4
CANSAT01G2206 Cannabis sativa HOM05D003534 ORTHO05D004911 9.5e-77 291.6 466 41.6
Medtr4g078640 Medicago truncatula HOM05D003534 ORTHO05D004911 9.5e-77 291.6 436 42.7
Lalb_Chr03g0025601 Lupinus albus HOM05D003534 ORTHO05D004911 1.2e-76 291.2 434 42.9
Sc22g0003200 Simmondsia chinensis HOM05D003534 ORTHO05D004911 1.2e-76 291.2 342 50.0
vmacro02092 Vaccinium macrocarpon HOM05D003534 ORTHO05D004911 1.2e-76 291.2 478 45.0
CsaV3_2G014840 Cucumis sativus L. HOM05D003534 ORTHO05D004911 2.1e-76 290.4 477 40.9
Lj4C693T2 Lonicera japonica HOM05D003534 ORTHO05D004911 2.1e-76 290.4 435 43.7
Nn3g20273 Nelumbo nucifera HOM05D003534 ORTHO05D004911 2.8e-76 290.0 429 43.4
Lj3g0020150 Lotus japonicus HOM05D003534 ORTHO05D004911 4.7e-76 289.3 435 43.4
Glyma.11G116800 Glycine max HOM05D003534 ORTHO05D004911 8.1e-76 288.5 434 42.6
MBI16_g05475_MAGBIO Magnolia biondii HOM05D003534 ORTHO05D004911 8.1e-76 288.5 425 42.1
Cfa004983 Carpinus fangiana HOM05D003534 ORTHO05D004911 1.4e-75 287.7 480 41.7
CDE06G1392 Ceratophyllum demersum HOM05D003534 ORTHO05D004911 1.4e-75 287.7 356 46.6
ClCG11G004310 Citrullus lanatus HOM05D003534 ORTHO05D004911 1.4e-75 287.7 404 44.1
TWI79G0037 Tripterygium wilfordii HOM05D003534 ORTHO05D004911 1.4e-75 287.7 473 41.6
Duzib132G0318 Durio zibethinus HOM05D003534 ORTHO05D004911 1.8e-75 287.3 330 51.8
FAN24G0084 Fragaria x ananassa HOM05D003534 ORTHO05D004911 2.3e-75 287.0 422 42.7
SEGI_39025 Sequoiadendron giganteum HOM05D003534 ORTHO05D004911 2.3e-75 287.0 376 44.9
SEGI_39659 Sequoiadendron giganteum HOM05D003534 ORTHO05D004911 2.3e-75 287.0 376 44.9
PSO675G2831 Papaver somniferum HOM05D003534 ORTHO05D004911 3.1e-75 286.6 434 43.5
Potri.009G118400 Populus trichocarpa HOM05D003534 ORTHO05D004911 5.2e-75 285.8 435 42.1
arahy.Tifrunner.gnm1.ann1.HU7T3D Arachis hypogaea HOM05D003534 ORTHO05D004911 6.8e-75 285.4 376 48.4
CDE08G0557 Ceratophyllum demersum HOM05D003534 ORTHO05D004911 6.8e-75 285.4 474 39.9
FvH4_2g09160 Fragaria vesca HOM05D003534 ORTHO05D004911 6.8e-75 285.4 428 42.8
unitig_21.g20784 Utricularia gibba HOM05D003534 ORTHO05D004911 6.8e-75 285.4 335 51.6
arahy.Tifrunner.gnm1.ann1.32LR34 Arachis hypogaea HOM05D003534 ORTHO05D004911 8.9e-75 285.0 479 46.6
Glyma.12G042600 Glycine max HOM05D003534 ORTHO05D004911 8.9e-75 285.0 480 40.6
PSO541G3604 Papaver somniferum HOM05D003534 ORTHO05D004911 1.5e-74 284.3 434 43.3
Nn8g40768 Nelumbo nucifera HOM05D003534 ORTHO05D004911 3.4e-74 283.1 417 43.4
Aa31sc389G50 Aethionema arabicum HOM05D003534 ORTHO05D004911 7.6e-74 282.0 475 39.8
COL.COLO4_25956 Corchorus olitorius HOM05D003534 ORTHO05D004911 1.3e-73 281.2 411 48.2
Solyc11g020820.2 Solanum lycopersicum HOM05D003534 ORTHO05D004911 1.3e-73 281.2 428 42.3
FAN15G3506 Fragaria x ananassa HOM05D003534 ORTHO05D004911 1.7e-73 280.8 422 41.7
Sabra09G0090700 Salix brachista HOM05D003534 ORTHO05D004911 2.2e-73 280.4 469 40.9
FAN27G1894 Fragaria x ananassa HOM05D003534 ORTHO05D004911 2.9e-73 280.0 422 41.9
Medtr4g070380 Medicago truncatula HOM05D003534 ORTHO05D004911 2.9e-73 280.0 447 41.4
FAN20G2815 Fragaria x ananassa HOM05D003534 ORTHO05D004911 6.4e-73 278.9 421 41.1
RcHm_v2.0_Chr6g0265021 Rosa chinensis HOM05D003534 ORTHO05D004911 6.4e-73 278.9 422 42.2
Prupe.8G094400 Prunus persica HOM05D003534 ORTHO05D004911 2.4e-72 276.9 434 40.6
THA.LOC104807735 Tarenaya hassleriana HOM05D003534 ORTHO05D004911 2.4e-72 276.9 317 51.1
HanXRQChr12g0376181 Helianthus annuus HOM05D003534 ORTHO05D004911 3.2e-72 276.6 440 42.5
Hund20114 Selenicereus undatus HOM05D003534 ORTHO05D004911 4.1e-72 276.2 439 42.4
ATR0568G003 Amborella trichopoda HOM05D003534 ORTHO05D004911 7.1e-72 275.4 431 45.2
Hma1.2p1_0617F.1_g190140 Hydrangea macrophylla HOM05D003534 ORTHO05D004911 7.1e-72 275.4 460 42.4
DCAR_001567 Daucus carota HOM05D003534 ORTHO05D004911 2.1e-71 273.9 481 40.3
Aqoxy3G00729 Aquilegia oxysepala HOM05D003534 ORTHO05D004911 2.7e-71 273.5 435 41.4
EL10Ac2g03296 Beta vulgaris HOM05D003534 ORTHO05D004911 2.7e-71 273.5 392 45.7
AUR62038347 Chenopodium quinoa HOM05D003534 ORTHO05D004911 2.7e-71 273.5 441 42.9
MD10G1073000 Malus domestica HOM05D003534 ORTHO05D004911 6.0e-71 272.3 434 39.6
ATR0579G045 Amborella trichopoda HOM05D003534 ORTHO05D004911 1.7e-70 270.8 432 41.0
Oeu029149.3 Olea europaea HOM05D003534 ORTHO05D004911 1.5e-69 267.7 369 46.1
AL7G27310 Arabidopsis lyrata HOM05D003534 ORTHO05D004911 1.9e-69 267.3 359 44.8
Thhalv10024417m.g Eutrema salsugineum HOM05D003534 ORTHO05D004911 4.3e-69 266.2 359 45.4
C07p54510 Brassica napus HOM05D003534 ORTHO05D004911 7.3e-69 265.4 429 38.5
Lsat_1_v5_gn_5_119261 Lactuca sativa HOM05D003534 ORTHO05D004911 9.6e-69 265.0 421 42.5
A08p21010 Brassica napus HOM05D003534 ORTHO05D004911 1.6e-68 264.2 359 45.1
MD05G1064300 Malus domestica HOM05D003534 ORTHO05D004911 1.6e-68 264.2 436 38.3
PSO675G9373 Papaver somniferum HOM05D003534 ORTHO05D004911 1.6e-68 264.2 430 40.5
HPP92_017536 Vanilla planifolia HOM05D003534 ORTHO05D004911 1.6e-68 264.2 323 47.1
Carub.0007s1523 Capsella rubella HOM05D003534 ORTHO05D004911 2.1e-68 263.8 360 44.7
Ah.11g039060 Amaranthus hybridus HOM05D003534 ORTHO05D004911 6.2e-68 262.3 296 52.4
BcaC07g38209 Brassica carinata HOM05D003534 ORTHO05D004911 8.1e-68 261.9 359 44.0
BolC8t48630H Brassica oleracea HOM05D003534 ORTHO05D004911 8.1e-68 261.9 359 44.0
AT4G25730 Arabidopsis thaliana HOM05D003534 ORTHO05D004911 1.4e-67 261.2 473 38.1
C08p09620 Brassica napus HOM05D003534 ORTHO05D004911 1.4e-67 261.2 359 44.0
GSVIVG01023801001 Vitis vinifera HOM05D003534 ORTHO05D004911 1.2e-66 258.1 415 40.7
BolC7t45937H Brassica oleracea HOM05D003534 ORTHO05D004911 2.6e-66 256.9 429 37.8
BraA08t34053Z Brassica rapa HOM05D003534 ORTHO05D004911 4.4e-66 256.1 370 43.8
Ciclev10027844m.g Citrus clementina HOM05D003534 ORTHO05D004911 4.4e-66 256.1 425 39.8
BraA03t14692Z Brassica rapa HOM05D003534 ORTHO05D004911 2.4e-64 250.4 431 38.7
CARHR233180 Cardamine hirsuta HOM05D003534 ORTHO05D004911 3.2e-64 250.0 473 36.8
Sp7g23760 Schrenkiella parvula HOM05D003534 ORTHO05D004911 4.2e-64 249.6 347 44.4
THA.LOC104804130 Tarenaya hassleriana HOM05D003534 ORTHO05D004911 7.1e-64 248.8 316 47.2
AUR62037043 Chenopodium quinoa HOM05D003534 ORTHO05D004911 9.3e-64 248.4 291 50.9
A03p56220 Brassica napus HOM05D003534 ORTHO05D004911 1.2e-63 248.1 431 38.5
AL6G48970 Arabidopsis lyrata HOM05D003534 ORTHO05D004911 1.6e-63 247.7 454 39.9
AUR62041501 Chenopodium quinoa HOM05D003534 ORTHO05D004911 3.5e-63 246.5 204 64.2
Mapoly0151s0007 Marchantia polymorpha HOM05D003534 ORTHO05D004911 3.5e-63 246.5 373 43.2
AagrBONN_evm.TU.Sc2ySwM_228.187 Anthoceros agrestis HOM05D003534 ORTHO05D004911 1.0e-62 245.0 370 41.9
Os05g0567400 Oryza sativa ssp. japonica HOM05D003534 ORTHO05D004911 4.3e-61 239.6 431 39.0
Zm00001eb296160 Zea mays HOM05D003534 ORTHO05D004911 5.3e-59 232.6 298 46.3
Zm00001eb343980 Zea mays HOM05D003534 ORTHO05D004911 6.9e-59 232.3 311 45.3
CANSAT35G1090 Cannabis sativa HOM05D003534 ORTHO05D004911 1.3e-57 228.0 428 37.1
BcaB05g23691 Brassica carinata HOM05D003534 ORTHO05D004911 2.2e-57 227.3 327 43.1
Sopen11g010760 Solanum pennellii HOM05D003534 ORTHO05D004911 5.4e-56 222.6 408 38.5
CANSAT21G0339 Cannabis sativa HOM05D003534 ORTHO05D004911 9.3e-56 221.9 238 54.6
SMO361G0029 Selaginella moellendorffii HOM05D003534 ORTHO05D004911 9.3e-56 221.9 368 40.2
Pp3c2_28180 Physcomitrium patens HOM05D003534 ORTHO05D004911 2.3e-54 217.2 304 42.1
Pp3c2_28182 Physcomitrium patens HOM05D003534 ORTHO05D004911 2.3e-54 217.2 304 42.1
MBI16_g07725_MAGBIO Magnolia biondii HOM05D003534 ORTHO05D000385 1.6e-52 211.1 267 49.1
SMO361G0155 Selaginella moellendorffii HOM05D003534 ORTHO05D004911 1.6e-52 211.1 358 39.4
SMO361G0409 Selaginella moellendorffii HOM05D003534 ORTHO05D004911 1.6e-52 211.1 358 39.4
Carub.0006s3329 Capsella rubella HOM05D003534 ORTHO05D004911 5.1e-46 189.5 314 37.9
CBR_g6403 Chara braunii HOM05D003534 ORTHO05D004911 8.7e-46 188.7 311 38.6
PSO675G8187 Papaver somniferum HOM05D003534 ORTHO05D004911 1.9e-45 187.6 133 63.9
SMO361G0680 Selaginella moellendorffii HOM05D003534 ORTHO05D004911 3.3e-45 186.8 164 58.5
Cre12.g529500 Chlamydomonas reinhardtii HOM05D003534 ORTHO05D004911 7.4e-45 185.7 183 54.6
Cfa023799 Carpinus fangiana HOM05D003534 ORTHO05D004911 2.9e-33 147.1 195 41.0
PRCOL_00001513 Prasinoderma coloniale HOM05D003534 ORTHO05D004911 2.5e-32 144.1 150 45.3
ClCG11G000160 Citrullus lanatus HOM05D001035 ORTHO05D001045 7.2e-32 142.5 261 38.3
PSO170G1266 Papaver somniferum HOM05D034905 ORTHO05D004911 9.3e-32 142.1 267 35.2
PSO170G1701 Papaver somniferum HOM05D003534 ORTHO05D004911 9.3e-32 142.1 267 35.2
MCO16G310 Micromonas commoda HOM05D003534 ORTHO05D004911 2.3e-30 137.5 139 48.2
SEGI_04005 Sequoiadendron giganteum HOM05D003534 ORTHO05D004911 3.9e-30 136.7 225 40.9
Haze_26769 Corylus avellana HOM05D003534 ORTHO05D004911 1.3e-28 131.7 263 33.5
PSO478G3774 Papaver somniferum HOM05D003534 ORTHO05D004911 3.7e-28 130.2 226 36.7
SEGI_37147 Sequoiadendron giganteum HOM05D003534 ORTHO05D004911 2.4e-27 127.5 139 46.0
PSO063G5362 Papaver somniferum HOM05D003534 ORTHO05D004911 5.0e-25 119.8 160 43.8
Atru.chr5.3044 Acer truncatum HOM05D003534 ORTHO05D004911 1.5e-21 108.2 190 40.0
Lj5A195T78 Lonicera japonica HOM05D003534 ORTHO05D004911 1.4e-19 101.7 226 35.8
AagrBONN_evm.TU.Sc2ySwM_228.235 Anthoceros agrestis HOM05D003534 ORTHO05D004911 4.1e-19 100.1 96 51.0
PSO478G1590 Papaver somniferum HOM05D000040 ORTHO05D000267 4.1e-19 100.1 199 34.7
Lj5A195T77 Lonicera japonica HOM05D003534 ORTHO05D011045 4.2e-16 90.1 54 81.5
Oeu029134.1 Olea europaea HOM05D003534 ORTHO05D004911 2.7e-15 87.4 84 58.3
CBR_g57013 Chara braunii HOM05D005640 ORTHO05D007124 8.8e-14 82.4 169 29.0
Cre03.g145907 Chlamydomonas reinhardtii HOM05D005640 ORTHO05D007124 4.4e-13 80.1 142 32.4
MCO04G259 Micromonas commoda HOM05D005640 ORTHO05D007124 4.4e-13 80.1 195 29.7
Os09g0445100 Oryza sativa ssp. japonica HOM05D003534 ORTHO05D004911 4.4e-13 80.1 61 54.1
MD09G1159100 Malus domestica HOM05D003534 ORTHO05D022234 1.4e-06 58.5 100 32.0


User provided reference genes

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