Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G487.1 Capsicum annuum HOM05D003777 ORTHO05D004690 0.0e+00 1193.7 655 100.0
Solyc11g062270.2 Solanum lycopersicum HOM05D003777 ORTHO05D004690 0.0e+00 1077.4 665 89.8
Sopen11g024250 Solanum pennellii HOM05D003777 ORTHO05D004690 0.0e+00 1075.5 665 89.9
Nitab4.5_0000492g0120 Nicotiana tabacum HOM05D003777 ORTHO05D004690 0.0e+00 1075.1 665 89.2
Nitab4.5_0002026g0090 Nicotiana tabacum HOM05D003777 ORTHO05D004690 0.0e+00 1075.1 665 89.2
Peaxi162Scf00029g02527 Petunia axillaris HOM05D003777 ORTHO05D004690 2.6e-286 988.4 660 83.6
Dinv18168 Davidia involucrata HOM05D003777 ORTHO05D004690 1.9e-260 902.5 676 74.1
Oeu015952.1 Olea europaea HOM05D003777 ORTHO05D004690 6.7e-258 894.0 659 75.4
CSS0004768 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 8.2e-256 887.1 666 72.8
SGA_v2.0_scaffold247G44863 Striga asiatica HOM05D003777 ORTHO05D004690 2.6e-254 882.1 692 71.7
MSTRG.12471 Avicennia marina HOM05D003777 ORTHO05D004690 7.7e-254 880.6 628 76.4
Nitab4.5_0002757g0020 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.1e-252 876.7 641 77.4
Actinidia08096 Actinidia chinensis HOM05D003777 ORTHO05D004690 6.3e-248 860.9 647 73.1
Lsat_1_v5_gn_2_96961 Lactuca sativa HOM05D003777 ORTHO05D004690 2.4e-247 859.0 665 71.7
DCAR_021624 Daucus carota HOM05D003777 ORTHO05D004690 1.0e-245 853.6 640 72.0
vmacro01091 Vaccinium macrocarpon HOM05D003777 ORTHO05D004690 1.7e-245 852.8 680 69.7
QL03p055332 Quercus lobata HOM05D003777 ORTHO05D004690 3.6e-243 845.1 645 73.5
Dinv11003 Davidia involucrata HOM05D003777 ORTHO05D004690 3.0e-242 842.0 666 69.5
Thecc.02G272700 Theobroma cacao HOM05D003777 ORTHO05D004690 2.6e-241 839.0 675 69.9
Hma1.2p1_0079F.1_g041650 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 6.3e-240 834.3 664 70.3
CiPaw.05G173500 Carya illinoinensis HOM05D003777 ORTHO05D004690 9.1e-239 830.5 650 72.0
Potri.006G216400 Populus trichocarpa HOM05D003777 ORTHO05D004690 3.5e-238 828.6 668 69.6
Sabra06G0166800 Salix brachista HOM05D003777 ORTHO05D004690 2.2e-237 825.9 633 71.1
Rhsim12G0035800 Rhododendron simsii HOM05D003777 ORTHO05D004690 5.0e-237 824.7 750 63.7
Migut.D00587 Erythranthe guttata HOM05D003777 ORTHO05D004690 6.5e-237 824.3 605 75.4
DCAR_021625 Daucus carota HOM05D003777 ORTHO05D004690 3.2e-236 822.0 641 70.2
TAR374G1267 Trochodendron aralioides HOM05D003777 ORTHO05D004690 3.2e-236 822.0 640 70.6
TAR374G0928 Trochodendron aralioides HOM05D003777 ORTHO05D004690 2.7e-235 818.9 640 70.5
GSVIVG01010320001 Vitis vinifera HOM05D003777 ORTHO05D004690 3.6e-235 818.5 635 70.9
ECA233G1683 Erigeron canadensis HOM05D003777 ORTHO05D004690 2.3e-234 815.8 665 69.0
CANSAT01G1767 Cannabis sativa HOM05D003777 ORTHO05D004690 4.0e-234 815.1 624 71.2
Phvul.002G176900 Phaseolus vulgaris HOM05D003777 ORTHO05D004690 3.1e-231 805.4 669 68.3
Sed0005823 Sechium edule HOM05D003777 ORTHO05D004690 1.2e-230 803.5 624 70.5
PSO170G4787 Papaver somniferum HOM05D003777 ORTHO05D004690 1.9e-228 796.2 671 66.6
Hund25014 Selenicereus undatus HOM05D003777 ORTHO05D004690 1.9e-228 796.2 660 68.5
Glyma.05G144700 Glycine max HOM05D003777 ORTHO05D004690 2.5e-228 795.8 634 70.2
Aa31LG4G12090 Aethionema arabicum HOM05D003777 ORTHO05D004690 7.2e-228 794.3 663 67.4
TWI75G0300 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 7.2e-228 794.3 630 69.8
TWI36G1566 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 9.4e-228 793.9 636 68.9
HanXRQChr04g0126141 Helianthus annuus HOM05D003777 ORTHO05D004690 1.6e-227 793.1 632 69.6
Duzib268G0959 Durio zibethinus HOM05D003777 ORTHO05D004690 1.0e-226 790.4 675 67.4
Manes.12G016400 Manihot esculenta HOM05D003777 ORTHO05D004690 1.0e-226 790.4 669 67.6
Duzib248G0478 Durio zibethinus HOM05D003777 ORTHO05D004690 3.0e-226 788.9 676 67.6
PSO063G1619 Papaver somniferum HOM05D003777 ORTHO05D004690 4.0e-226 788.5 624 69.7
THA.LOC104825526 Tarenaya hassleriana HOM05D003777 ORTHO05D004690 1.2e-225 786.9 666 68.2
Psat7g080080 Pisum sativum HOM05D003777 ORTHO05D004690 3.4e-225 785.4 646 68.0
Cpa.g.sc86.2 Carica papaya HOM05D003777 ORTHO05D004690 1.3e-224 783.5 675 67.1
PGSC0003DMG400032494 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.3e-224 783.5 474 89.7
Aqoxy5G03557 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 2.2e-224 782.7 651 67.0
Gohir.D05G312600 Gossypium hirsutum HOM05D003777 ORTHO05D004690 2.2e-224 782.7 675 67.3
Gohir.A05G311500 Gossypium hirsutum HOM05D003777 ORTHO05D004690 8.3e-224 780.8 675 67.3
Manes.13G014300 Manihot esculenta HOM05D003777 ORTHO05D004690 1.4e-223 780.0 634 69.4
Lj4g0007172 Lotus japonicus HOM05D003777 ORTHO05D004690 1.8e-223 779.6 669 67.6
Cfa009302 Carpinus fangiana HOM05D003777 ORTHO05D004690 4.1e-223 778.5 675 67.1
unitig_744.g24046 Utricularia gibba HOM05D003777 ORTHO05D004690 4.1e-223 778.5 672 65.5
Sp5g22670 Schrenkiella parvula HOM05D003777 ORTHO05D004690 2.0e-222 776.2 661 65.7
Gorai.009G334100 Gossypium raimondii HOM05D003777 ORTHO05D004690 1.1e-220 770.4 673 66.4
CsaV3_5G030580 Cucumis sativus L. HOM05D003777 ORTHO05D004690 1.5e-220 770.0 672 65.6
MD13G1110100 Malus domestica HOM05D003777 ORTHO05D004690 1.9e-220 769.6 672 65.6
Ca_18071_v3 Cicer arietinum L. HOM05D003777 ORTHO05D004690 2.5e-220 769.2 669 66.4
ClCG05G026250 Citrullus lanatus HOM05D003777 ORTHO05D004690 2.5e-220 769.2 652 66.7
Atru.chr11.2223 Acer truncatum HOM05D003777 ORTHO05D004690 3.3e-220 768.8 653 66.2
Nitab4.5_0001925g0190 Nicotiana tabacum HOM05D003777 ORTHO05D004690 5.6e-220 768.1 627 71.1
BcaC08g46176 Brassica carinata HOM05D003777 ORTHO05D004690 7.2e-220 767.7 667 66.1
C06p42580 Brassica napus HOM05D003777 ORTHO05D004690 7.2e-220 767.7 667 66.1
BolC6t39181H Brassica oleracea HOM05D003777 ORTHO05D004690 7.2e-220 767.7 667 66.1
PGR102G0273 Punica granatum HOM05D003777 ORTHO05D004690 7.2e-220 767.7 670 66.9
AT1G67680 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 9.5e-220 767.3 672 65.3
MD16G1110000 Malus domestica HOM05D003777 ORTHO05D004690 1.2e-219 766.9 672 65.8
Medtr8g079990 Medicago truncatula HOM05D003777 ORTHO05D004690 4.7e-219 765.0 638 67.9
arahy.Tifrunner.gnm1.ann1.SED4J7 Arachis hypogaea HOM05D003777 ORTHO05D004690 1.0e-218 763.8 706 62.7
BcaB03g15177 Brassica carinata HOM05D003777 ORTHO05D004690 1.4e-218 763.5 663 65.5
Thhalv10018246m.g Eutrema salsugineum HOM05D003777 ORTHO05D004690 1.4e-218 763.5 668 65.0
MELO3C011898.2 Cucumis melo HOM05D003777 ORTHO05D004690 3.4e-217 758.8 622 68.2
AL2G26380 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 5.7e-217 758.1 665 65.3
Glyma.08G101100 Glycine max HOM05D003777 ORTHO05D004690 9.8e-217 757.3 638 67.4
A07p32470 Brassica napus HOM05D003777 ORTHO05D004690 4.9e-216 755.0 660 65.6
Actinidia30683 Actinidia chinensis HOM05D003777 ORTHO05D004690 7.0e-215 751.1 668 66.0
Eucgr.B03455 Eucalyptus grandis HOM05D003777 ORTHO05D004690 9.2e-215 750.7 675 65.3
arahy.Tifrunner.gnm1.ann1.35MH8V Arachis hypogaea HOM05D003777 ORTHO05D004690 2.7e-214 749.2 656 64.9
arahy.Tifrunner.gnm1.ann1.238UV6 Arachis hypogaea HOM05D003777 ORTHO05D004690 5.9e-214 748.0 668 65.0
CSS0018349 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.0e-213 747.3 526 74.5
Carub.0002s1406 Capsella rubella HOM05D003777 ORTHO05D004690 1.0e-213 747.3 669 64.0
TPR.G17105 Trifolium pratense HOM05D003777 ORTHO05D004690 1.7e-213 746.5 669 64.4
CARHR060270 Cardamine hirsuta HOM05D003777 ORTHO05D004690 2.3e-213 746.1 634 66.2
VMungo0251G0828 Vigna mungo HOM05D003777 ORTHO05D004690 3.9e-213 745.3 711 63.0
Ah.10g034950 Amaranthus hybridus HOM05D003777 ORTHO05D004690 2.5e-212 742.7 645 65.4
arahy.Tifrunner.gnm1.ann1.9WV3XJ Arachis hypogaea HOM05D003777 ORTHO05D004690 2.5e-212 742.7 663 64.7
Lalb_Chr07g0187251 Lupinus albus HOM05D003777 ORTHO05D004690 5.6e-212 741.5 669 65.2
FvH4_4g24580 Fragaria vesca HOM05D003777 ORTHO05D004690 1.0e-210 737.3 664 64.3
FAN12G3799 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.8e-210 736.5 664 64.3
AUR62017151 Chenopodium quinoa HOM05D003777 ORTHO05D004690 4.0e-210 735.3 678 62.4
A07p34190 Brassica napus HOM05D003777 ORTHO05D004690 2.6e-209 732.6 667 64.6
RcHm_v2.0_Chr4g0431561 Rosa chinensis HOM05D003777 ORTHO05D004690 7.5e-209 731.1 663 64.4
RcHm_v2.0_Chr4g0431581 Rosa chinensis HOM05D003777 ORTHO05D004690 2.2e-208 729.6 663 64.3
FAN07G0030 Fragaria x ananassa HOM05D003777 ORTHO05D004690 4.9e-208 728.4 664 63.6
FAN17G2971 Fragaria x ananassa HOM05D003777 ORTHO05D004690 5.4e-207 724.9 650 64.5
AUR62035656 Chenopodium quinoa HOM05D003777 ORTHO05D004690 9.2e-207 724.2 682 60.9
Prupe.1G234800 Prunus persica HOM05D003777 ORTHO05D004690 9.2e-207 724.2 574 70.9
FAN22G1648 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.3e-205 720.3 664 63.1
EL10Ac9g22111 Beta vulgaris HOM05D003777 ORTHO05D004690 6.2e-203 711.4 673 61.4
AT1G67650 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 9.8e-201 704.1 666 60.2
Ciclev10030955m.g Citrus clementina HOM05D003777 ORTHO05D004690 9.5e-196 687.6 645 63.3
MBI11_g31858_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 8.1e-195 684.5 685 59.9
TPR.G27143 Trifolium pratense HOM05D003777 ORTHO05D004690 5.2e-194 681.8 537 68.2
COL.COLO4_23602 Corchorus olitorius HOM05D003777 ORTHO05D004690 1.2e-193 680.6 668 60.6
HPP92_012793 Vanilla planifolia HOM05D003777 ORTHO05D004690 7.8e-190 667.9 674 58.0
Os01g0889000 Oryza sativa ssp. japonica HOM05D003777 ORTHO05D004690 8.6e-189 664.5 672 57.3
CDE07G0923 Ceratophyllum demersum HOM05D003777 ORTHO05D004690 9.6e-188 661.0 672 56.5
Sc04g0009890 Simmondsia chinensis HOM05D003777 ORTHO05D004690 4.4e-185 652.1 515 70.9
Sed0021346 Sechium edule HOM05D003777 ORTHO05D004690 9.9e-185 651.0 556 67.1
BraA07t31048Z Brassica rapa HOM05D003777 ORTHO05D004690 3.2e-183 646.0 559 63.7
Lj2C633G4 Lonicera japonica HOM05D003777 ORTHO05D004690 1.1e-180 637.5 511 68.7
ATR0824G106 Amborella trichopoda HOM05D003777 ORTHO05D004690 9.0e-178 627.9 662 55.4
BcaB03g15368 Brassica carinata HOM05D003777 ORTHO05D004690 5.1e-173 612.1 667 56.8
Carub.0002s1402 Capsella rubella HOM05D003777 ORTHO05D004690 8.7e-173 611.3 546 64.8
AL2G26340 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 7.1e-167 591.7 635 54.3
CSS0034811 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 7.9e-158 561.6 448 69.9
BolC2t08468H Brassica oleracea HOM05D003777 ORTHO05D004690 4.3e-156 555.8 642 53.3
Lalb_Chr12g0206451 Lupinus albus HOM05D003777 ORTHO05D004690 1.2e-150 537.7 461 67.7
Lalb_Chr12g0206431 Lupinus albus HOM05D003777 ORTHO05D004690 3.3e-148 529.6 455 67.7
Mapoly0007s0138 Marchantia polymorpha HOM05D003777 ORTHO05D004690 2.6e-145 520.0 631 47.4
SHI17928 Sapria himalayana HOM05D003777 ORTHO05D004690 7.2e-143 511.9 667 49.8
SEGI_14731 Sequoiadendron giganteum HOM05D003777 ORTHO05D004690 2.3e-141 506.9 544 52.8
C06p38540 Brassica napus HOM05D003777 ORTHO05D004690 3.3e-140 503.1 451 62.3
Zm00001eb145240 Zea mays HOM05D003777 ORTHO05D004690 2.2e-139 500.4 494 57.1
Pp3c19_7700 Physcomitrium patens HOM05D003777 ORTHO05D004690 1.2e-137 494.6 652 44.6
BolC6t38947H Brassica oleracea HOM05D003777 ORTHO05D004690 1.7e-120 437.6 409 60.9
Lalb_Chr12g0206401 Lupinus albus HOM05D003777 ORTHO05D004690 1.2e-118 431.4 337 68.0
SMO356G0370 Selaginella moellendorffii HOM05D003777 ORTHO05D004690 5.7e-116 422.5 592 44.4
CBR_g26341 Chara braunii HOM05D003777 ORTHO05D004690 2.7e-113 413.7 629 44.5
TAR622G1358 Trochodendron aralioides HOM05D003777 ORTHO05D004690 5.0e-112 409.5 337 70.0
C02p23330 Brassica napus HOM05D003777 ORTHO05D004690 3.6e-110 403.3 640 43.8
AUR62017138 Chenopodium quinoa HOM05D003777 ORTHO05D004690 7.3e-87 325.9 351 55.0
Oeu007469.1 Olea europaea HOM05D003777 ORTHO05D004690 2.1e-86 324.3 325 60.6
PGSC0003DMG400024128 Solanum tuberosum HOM05D003777 ORTHO05D004690 8.3e-83 312.4 180 90.6
PGSC0003DMG400017991 Solanum tuberosum HOM05D003777 ORTHO05D004690 2.3e-80 304.3 174 93.1
ECA238G3243 Erigeron canadensis HOM05D003777 ORTHO05D004690 3.6e-70 270.4 224 63.4
Hma1.2p1_0075F.1_g039220 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 4.7e-70 270.0 241 64.7
MCO13G157 Micromonas commoda HOM05D003777 ORTHO05D004690 1.4e-69 268.5 648 35.5
Solyc10g044443.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 1.3e-67 261.9 176 81.2
CSS0039153 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.1e-66 258.8 208 67.3
PGSC0003DMG400024126 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.1e-66 258.8 168 90.5
Sopen01g018830 Solanum pennellii HOM05D003777 ORTHO05D004690 1.3e-64 251.9 176 78.4
Sopen01g018820 Solanum pennellii HOM05D003777 ORTHO05D004690 3.3e-63 247.3 174 79.3
Cre03.g182500 Chlamydomonas reinhardtii HOM05D003777 ORTHO05D004690 1.9e-58 231.5 746 31.1
BraA07t30871Z Brassica rapa HOM05D003777 ORTHO05D004690 2.4e-58 231.1 210 60.5
Nn4g21997 Nelumbo nucifera HOM05D003777 ORTHO05D004690 8.7e-56 222.6 180 73.9
TAR622G0547 Trochodendron aralioides HOM05D003777 ORTHO05D004690 9.9e-52 209.1 166 67.5
CAN.G1295.1 Capsicum annuum HOM05D003777 ORTHO05D004690 1.9e-50 204.9 144 81.2
PRCOL_00006597 Prasinoderma coloniale HOM05D003777 ORTHO05D004690 1.6e-46 191.8 696 29.7
Psat3g102200 Pisum sativum HOM05D003777 ORTHO05D004690 7.6e-44 183.0 155 65.2
Psat5g044680 Pisum sativum HOM05D003777 ORTHO05D004690 2.2e-43 181.4 155 65.2
Aqoxy6G02118 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 2.4e-37 161.4 128 68.8
Haze_17766 Corylus avellana HOM05D001576 ORTHO05D000401 1.0e-35 156.0 130 67.7
CAN.G1310.4 Capsicum annuum HOM05D003777 ORTHO05D004690 5.5e-34 150.2 91 87.9
Aqoxy6G02120 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 1.3e-32 145.6 136 64.0
Lalb_Chr12g0206411 Lupinus albus HOM05D003777 ORTHO05D004690 9.1e-29 132.9 91 79.1
Lalb_Chr12g0206441 Lupinus albus HOM05D003777 ORTHO05D004690 9.1e-29 132.9 91 79.1
Lalb_Chr12g0206461 Lupinus albus HOM05D003777 ORTHO05D004690 9.1e-29 132.9 91 79.1
Aqoxy6G02119 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 1.0e-27 129.4 99 66.7
Psat3g103880 Pisum sativum HOM05D003777 ORTHO05D004690 2.2e-27 128.3 183 44.3
Lalb_Chr12g0206421 Lupinus albus HOM05D003777 ORTHO05D004690 7.9e-25 119.8 109 61.5
Solyc01g047580.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 1.5e-23 115.5 119 61.3
TAR622G0255 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.8e-21 108.6 94 59.6
C06p38550 Brassica napus HOM05D003777 ORTHO05D004690 8.5e-19 99.8 106 67.0
MBI11_g11081_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 2.5e-18 98.2 97 54.6
MBI11_g45427_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 1.6e-17 95.5 94 55.3
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 2.1e-17 95.1 94 54.3
PGSC0003DMG400024133 Solanum tuberosum HOM05D003777 ORTHO05D004690 4.7e-17 94.0 54 90.7
Nitab4.5_0004629g0100 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.8e-16 92.0 54 85.2
BcaC03g14865 Brassica carinata HOM05D003777 ORTHO05D004690 6.7e-16 90.1 88 59.1
BcaC03g14858 Brassica carinata HOM05D003777 ORTHO05D004690 9.7e-15 86.3 75 64.0
SHI17930 Sapria himalayana HOM05D003777 ORTHO05D012379 1.7e-14 85.5 114 47.4
SEGI_18986 Sequoiadendron giganteum HOM05D003777 ORTHO05D000001 5.3e-13 80.5 82 48.8
Psat4g130680 Pisum sativum HOM05D003777 ORTHO05D037365 1.0e-11 76.3 94 45.7
CAN.G151.20 Capsicum annuum HOM05D000329 ORTHO05D000833 2.9e-11 74.7 48 85.4
Cfa022335 Carpinus fangiana HOM05D003777 ORTHO05D004690 3.2e-10 71.2 640 22.3
Sopen01g018800 Solanum pennellii HOM05D003777 ORTHO05D393350 3.2e-10 71.2 142 40.1
Actinidia09282 Actinidia chinensis HOM05D003777 ORTHO05D004690 9.4e-10 69.7 334 27.8
Nitab4.5_0004750g0060 Nicotiana tabacum HOM05D003777 ORTHO05D012379 2.6e-07 61.6 107 40.2


User provided reference genes

Program Settings