Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G465.6 Capsicum annuum HOM05D000161 ORTHO05D005857 5.5e-239 830.5 399 100.0
Solyc10g005110.3 Solanum lycopersicum HOM05D000161 ORTHO05D005857 2.2e-203 712.2 402 86.6
Sopen10g001130 Solanum pennellii HOM05D000161 ORTHO05D005857 4.9e-203 711.1 405 86.4
PGSC0003DMG400011264 Solanum tuberosum HOM05D000161 ORTHO05D005857 8.4e-195 683.7 341 93.3
Nitab4.5_0011255g0010 Nicotiana tabacum HOM05D000161 ORTHO05D005857 1.6e-193 679.5 399 83.2
Nitab4.5_0000075g0030 Nicotiana tabacum HOM05D000161 ORTHO05D005857 4.3e-191 671.4 406 81.8
Peaxi162Scf00005g00134 Petunia axillaris HOM05D000161 ORTHO05D005857 1.5e-188 662.9 409 80.7
Dinv05290 Davidia involucrata HOM05D000161 ORTHO05D005857 1.8e-184 649.4 423 75.9
CSS0003887 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 3.0e-184 648.7 345 86.7
SGA_v2.0_scaffold423G51450 Striga asiatica HOM05D000161 ORTHO05D005857 1.5e-183 646.4 412 76.7
Ciclev10011903m.g Citrus clementina HOM05D000161 ORTHO05D005857 2.1e-182 642.5 395 79.5
Atru.chr8.1036 Acer truncatum HOM05D000161 ORTHO05D005857 4.5e-180 634.8 402 77.6
Sp1g02440 Schrenkiella parvula HOM05D000161 ORTHO05D005857 4.5e-180 634.8 388 79.6
DCAR_024972 Daucus carota HOM05D000161 ORTHO05D005857 4.9e-179 631.3 341 87.1
BraA09t42165Z Brassica rapa HOM05D000161 ORTHO05D005857 6.5e-179 630.9 387 77.0
Nn7g38388 Nelumbo nucifera HOM05D000161 ORTHO05D005857 6.5e-179 630.9 403 76.9
A09p68290 Brassica napus HOM05D000161 ORTHO05D005857 1.9e-178 629.4 387 76.7
THA.LOC104826018 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 4.2e-178 628.2 379 79.4
MSTRG.16382 Avicennia marina HOM05D000161 ORTHO05D005857 5.5e-178 627.9 402 76.1
C08p52750 Brassica napus HOM05D000161 ORTHO05D005857 7.1e-178 627.5 387 76.7
QL04p064793 Quercus lobata HOM05D000161 ORTHO05D005857 7.1e-178 627.5 345 84.3
A10p02010 Brassica napus HOM05D000161 ORTHO05D005857 1.2e-177 626.7 365 81.6
HanXRQChr03g0090181 Helianthus annuus HOM05D000161 ORTHO05D005857 1.2e-177 626.7 399 77.7
arahy.Tifrunner.gnm1.ann1.S9CZ9A Arachis hypogaea HOM05D000161 ORTHO05D005857 1.6e-177 626.3 389 78.9
ClCG07G011020 Citrullus lanatus HOM05D000161 ORTHO05D005857 1.6e-177 626.3 411 76.4
Potri.011G023900 Populus trichocarpa HOM05D000161 ORTHO05D005857 2.1e-177 625.9 409 76.5
BraA10t42474Z Brassica rapa HOM05D000161 ORTHO05D005857 2.7e-177 625.5 387 78.6
C08p52850 Brassica napus HOM05D000161 ORTHO05D005857 3.5e-177 625.2 387 76.5
CARHR002850 Cardamine hirsuta HOM05D000161 ORTHO05D005857 3.5e-177 625.2 387 78.8
ECA240G1954 Erigeron canadensis HOM05D000161 ORTHO05D005857 3.5e-177 625.2 342 85.7
CiPaw.06G002700 Carya illinoinensis HOM05D000161 ORTHO05D005857 4.6e-177 624.8 340 85.0
Lj6A29G59 Lonicera japonica HOM05D000161 ORTHO05D005857 4.6e-177 624.8 344 84.6
PSO017G6394 Papaver somniferum HOM05D000161 ORTHO05D005857 4.6e-177 624.8 360 80.6
QL04p064724 Quercus lobata HOM05D000161 ORTHO05D005857 4.6e-177 624.8 399 76.4
AL1G12980 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 6.0e-177 624.4 387 78.6
Thhalv10007888m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 6.0e-177 624.4 388 78.4
PGR044G2307 Punica granatum HOM05D000161 ORTHO05D005857 7.9e-177 624.0 404 76.7
Medtr5g098800 Medicago truncatula HOM05D000161 ORTHO05D005857 1.0e-176 623.6 399 76.9
arahy.Tifrunner.gnm1.ann1.DVM8T3 Arachis hypogaea HOM05D000161 ORTHO05D005857 1.3e-176 623.2 393 78.1
BcaB02g06929 Brassica carinata HOM05D000161 ORTHO05D005857 1.3e-176 623.2 395 77.0
PSO478G0506 Papaver somniferum HOM05D000161 ORTHO05D005857 2.3e-176 622.5 360 80.6
Migut.M02037 Erythranthe guttata HOM05D000161 ORTHO05D005857 3.0e-176 622.1 396 75.0
SalBow8G0095 Salvia bowleyana HOM05D000161 ORTHO05D005857 3.0e-176 622.1 430 72.6
Eucgr.K01354 Eucalyptus grandis HOM05D000161 ORTHO05D005857 5.1e-176 621.3 415 74.5
Gohir.A08G050600 Gossypium hirsutum HOM05D000161 ORTHO05D005857 5.1e-176 621.3 398 76.1
PSO384G2739 Papaver somniferum HOM05D000161 ORTHO05D005857 5.1e-176 621.3 365 79.7
Lj3g0003708 Lotus japonicus HOM05D000161 ORTHO05D005857 6.7e-176 620.9 393 76.6
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 8.7e-176 620.5 391 76.7
Sc13g0008500 Simmondsia chinensis HOM05D000161 ORTHO05D005857 1.5e-175 619.8 340 84.1
Rhsim02G0171600 Rhododendron simsii HOM05D000161 ORTHO05D005857 1.9e-175 619.4 372 79.8
AT1G03475 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 2.5e-175 619.0 387 77.8
CSS0041680 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 2.5e-175 619.0 391 77.0
Carub.0006s3385 Capsella rubella HOM05D000161 ORTHO05D005857 3.3e-175 618.6 386 78.5
Hund11764 Selenicereus undatus HOM05D000161 ORTHO05D005857 3.3e-175 618.6 391 77.0
TWI60G0112 Tripterygium wilfordii HOM05D000161 ORTHO05D005857 3.3e-175 618.6 396 76.3
Hma1.2p1_0166F.1_g073470 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 4.3e-175 618.2 419 73.3
TPR.G35901 Trifolium pratense HOM05D000161 ORTHO05D005857 4.3e-175 618.2 376 79.0
Sabra11G0014900 Salix brachista HOM05D000161 ORTHO05D005857 5.7e-175 617.8 355 82.8
C05p01960 Brassica napus HOM05D000161 ORTHO05D005857 7.4e-175 617.5 365 80.3
unitig_32.g11549 Utricularia gibba HOM05D000161 ORTHO05D005857 7.4e-175 617.5 340 84.7
FvH4_6g39170 Fragaria vesca HOM05D000161 ORTHO05D005857 9.6e-175 617.1 396 76.0
Gorai.004G062500 Gossypium raimondii HOM05D000161 ORTHO05D005857 9.6e-175 617.1 398 75.6
Thecc.01G176100 Theobroma cacao HOM05D000161 ORTHO05D005857 9.6e-175 617.1 373 78.8
LjContig00081g0009344 Lotus japonicus HOM05D000161 ORTHO05D005857 1.6e-174 616.3 399 75.4
Manes.16G000600 Manihot esculenta HOM05D000161 ORTHO05D005857 1.6e-174 616.3 396 76.5
Phvul.008G289900 Phaseolus vulgaris HOM05D000161 ORTHO05D005857 1.6e-174 616.3 393 76.8
RcHm_v2.0_Chr2g0153001 Rosa chinensis HOM05D000161 ORTHO05D005857 1.6e-174 616.3 401 76.8
Haze_00005 Corylus avellana HOM05D000161 ORTHO05D005857 2.8e-174 615.5 397 76.8
MBI18_g38427_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D005857 2.8e-174 615.5 398 76.1
BcaC05g24526 Brassica carinata HOM05D000161 ORTHO05D005857 3.7e-174 615.1 387 77.0
BolC5t28975H Brassica oleracea HOM05D000161 ORTHO05D005857 3.7e-174 615.1 387 77.0
CANSAT64G1800 Cannabis sativa HOM05D000161 ORTHO05D005857 4.8e-174 614.8 406 75.4
FAN14G2022 Fragaria x ananassa HOM05D000161 ORTHO05D005857 6.2e-174 614.4 398 76.4
FAN09G1815 Fragaria x ananassa HOM05D000161 ORTHO05D005857 8.2e-174 614.0 398 76.4
vmacro11023 Vaccinium macrocarpon HOM05D000161 ORTHO05D005857 8.2e-174 614.0 457 68.5
FAN05G2261 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.4e-173 613.2 399 75.7
Carub.0001s0261 Capsella rubella HOM05D000161 ORTHO05D005857 1.8e-173 612.8 395 75.9
CsaV3_4G007220 Cucumis sativus L. HOM05D000161 ORTHO05D005857 1.8e-173 612.8 398 74.9
Prupe.3G183400 Prunus persica HOM05D000161 ORTHO05D005857 2.4e-173 612.5 384 76.8
Ah.07g209030 Amaranthus hybridus HOM05D000161 ORTHO05D005857 3.1e-173 612.1 402 75.9
Aqoxy1G01372 Aquilegia oxysepala HOM05D000161 ORTHO05D005857 3.1e-173 612.1 395 75.2
FAN02G1171 Fragaria x ananassa HOM05D000161 ORTHO05D005857 3.1e-173 612.1 399 75.4
MD17G1131200 Malus domestica HOM05D000161 ORTHO05D005857 3.1e-173 612.1 402 75.1
Psat2g001760 Pisum sativum HOM05D000161 ORTHO05D005857 6.9e-173 610.9 389 75.8
Glyma.14G003200 Glycine max HOM05D000161 ORTHO05D005857 1.2e-172 610.1 395 76.2
Cfa016257 Carpinus fangiana HOM05D000161 ORTHO05D005857 1.5e-172 609.8 400 75.2
Duzib138G0552 Durio zibethinus HOM05D000161 ORTHO05D005857 5.8e-172 607.8 398 74.4
Lalb_Chr04g0247041 Lupinus albus HOM05D000161 ORTHO05D005857 1.7e-171 606.3 390 75.1
MD09G1144600 Malus domestica HOM05D000161 ORTHO05D005857 1.7e-171 606.3 406 74.1
Ca_06491_v3 Cicer arietinum L. HOM05D000161 ORTHO05D005857 2.9e-171 605.5 397 76.1
BolC8t52801H Brassica oleracea HOM05D000161 ORTHO05D005857 2.5e-170 602.4 391 74.7
EL10Ac3g05707 Beta vulgaris HOM05D000161 ORTHO05D005857 3.2e-170 602.1 399 74.7
ATR0763G015 Amborella trichopoda HOM05D000161 ORTHO05D005857 7.1e-170 600.9 401 73.1
HPP92_026322 Vanilla planifolia HOM05D000161 ORTHO05D005857 1.2e-169 600.1 345 80.3
CDE02G0797 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 1.6e-169 599.7 408 72.8
TAR624G0726 Trochodendron aralioides HOM05D000161 ORTHO05D005857 1.3e-168 596.7 377 78.5
GSVIVG01015906001 Vitis vinifera HOM05D000161 ORTHO05D005857 1.5e-167 593.2 307 88.3
Zm00001eb071140 Zea mays HOM05D000161 ORTHO05D005857 1.5e-167 593.2 362 77.6
Os04g0610800 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D005857 8.2e-166 587.4 404 72.3
Sed0024620 Sechium edule HOM05D000161 ORTHO05D005857 2.4e-165 585.9 379 76.5
Gohir.A07G184900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 4.5e-164 581.6 340 79.1
Gohir.D08G060400 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.0e-163 580.5 301 87.7
BcaC07g42243 Brassica carinata HOM05D000161 ORTHO05D005857 2.2e-163 579.3 365 76.2
BcaC07g42252 Brassica carinata HOM05D000161 ORTHO05D005857 3.8e-163 578.6 365 76.2
Oeu008737.1 Olea europaea HOM05D000161 ORTHO05D005857 5.0e-163 578.2 548 57.3
AL6G49730 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 1.4e-162 576.6 309 86.1
TAR626G1695 Trochodendron aralioides HOM05D000161 ORTHO05D005857 3.2e-162 575.5 322 84.2
Oeu008990.3 Olea europaea HOM05D000161 ORTHO05D005857 2.1e-161 572.8 499 59.9
AUR62021226 Chenopodium quinoa HOM05D000161 ORTHO05D005857 6.1e-161 571.2 318 84.3
Lsat_1_v5_gn_3_111240 Lactuca sativa HOM05D000161 ORTHO05D005857 7.9e-161 570.9 404 72.5
Gorai.007G172100 Gossypium raimondii HOM05D000161 ORTHO05D005857 1.7e-158 563.1 367 75.7
Cc09_g04450 Coffea canephora HOM05D000161 ORTHO05D005857 6.9e-157 557.8 550 54.9
AUR62016021 Chenopodium quinoa HOM05D000161 ORTHO05D005857 3.4e-156 555.4 349 76.5
AagrBONN_evm.TU.Sc2ySwM_228.282 Anthoceros agrestis HOM05D000161 ORTHO05D005857 2.5e-154 549.3 341 75.1
Pp3c22_5800 Physcomitrium patens HOM05D000161 ORTHO05D005857 3.6e-153 545.4 371 71.7
Sp6g03240 Schrenkiella parvula HOM05D000161 ORTHO05D005857 1.0e-152 543.9 388 69.6
Cpa.g.sc417.1 Carica papaya HOM05D000161 ORTHO05D005857 1.4e-152 543.5 408 67.9
MELO3C016226.2 Cucumis melo HOM05D000161 ORTHO05D005857 6.7e-152 541.2 395 68.9
Pp3c21_600 Physcomitrium patens HOM05D000161 ORTHO05D005857 1.5e-151 540.0 343 74.9
Mapoly0039s0053 Marchantia polymorpha HOM05D000161 ORTHO05D005857 9.1e-149 530.8 340 72.9
SMO354G0013 Selaginella moellendorffii HOM05D000161 ORTHO05D005857 3.2e-146 522.3 302 78.8
MCO07G306 Micromonas commoda HOM05D000161 ORTHO05D005857 2.8e-134 482.6 370 64.1
BcaC07g42260 Brassica carinata HOM05D000161 ORTHO05D005857 5.4e-133 478.4 242 87.6
Gorai.001G214600 Gossypium raimondii HOM05D000161 ORTHO05D005857 2.1e-129 466.5 328 69.5
Cre02.g085450 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 3.1e-125 452.6 354 61.3
PRCOL_00002331 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 2.0e-124 449.9 308 67.5
CDE05G1536 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 1.3e-123 447.2 401 60.3
Gohir.D11G161800 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.6e-113 413.7 297 70.0
Zm00001eb430670 Zea mays HOM05D000161 ORTHO05D005857 7.5e-111 404.8 250 78.8
Cfa025537 Carpinus fangiana HOM05D000161 ORTHO05D005857 6.2e-105 385.2 322 58.7
CBR_g45705 Chara braunii HOM05D000161 ORTHO05D005857 2.3e-104 383.3 343 58.0
Thhalv10029252m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 7.5e-103 378.3 211 83.4
THA.LOC104815952 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 9.2e-101 371.3 224 78.6
Gohir.A11G154900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.9e-93 347.1 268 66.0
Haze_26605 Corylus avellana HOM05D000161 ORTHO05D005857 9.6e-90 334.7 287 54.4
Gohir.D07G191700 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.0e-87 327.0 205 74.1
AT4G03205 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 4.4e-79 299.3 235 66.0
MCO09G037 Micromonas commoda HOM05D000161 ORTHO05D005857 1.9e-69 267.3 310 45.2
Mapoly0070s0075 Marchantia polymorpha HOM05D000161 ORTHO05D005857 1.0e-67 261.5 320 43.1
AagrBONN_evm.TU.Sc2ySwM_228.3299 Anthoceros agrestis HOM05D000161 ORTHO05D005857 1.3e-67 261.2 358 41.6
PSO339G2005 Papaver somniferum HOM05D000161 ORTHO05D005857 1.5e-66 257.7 126 91.3
Pp3c15_4200 Physcomitrium patens HOM05D000161 ORTHO05D005857 2.1e-65 253.8 337 40.9
CBR_g23778 Chara braunii HOM05D000161 ORTHO05D005857 3.1e-64 250.0 341 39.3
Cre02.g092600 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 1.0e-59 235.0 310 40.0
arahy.Tifrunner.gnm1.ann1.I5BL8A Arachis hypogaea HOM05D000161 ORTHO05D005857 1.0e-54 218.4 179 62.6
PRCOL_00006910 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 2.2e-54 217.2 337 38.6
SEGI_02394 Sequoiadendron giganteum HOM05D000161 ORTHO05D005857 6.7e-51 205.7 247 41.7
Hma1.2p1_2159F.1_g315510 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 1.3e-46 191.4 114 79.8
arahy.Tifrunner.gnm1.ann1.0Q00UB Arachis hypogaea HOM05D000235 ORTHO05D000147 3.6e-44 183.3 155 60.0
arahy.Tifrunner.gnm1.ann1.F4AYRR Arachis hypogaea HOM05D000161 ORTHO05D005857 4.7e-28 129.8 92 67.4
SHI00986 Sapria himalayana HOM05D000161 ORTHO05D005857 1.1e-24 118.6 55 92.7
CARHR251640 Cardamine hirsuta HOM05D000161 ORTHO05D116224 2.7e-23 114.0 157 43.9
arahy.Tifrunner.gnm1.ann1.0Z8MR5 Arachis hypogaea HOM05D000161 ORTHO05D003903 2.6e-18 97.4 62 74.2
CAN.G129.44 Capsicum annuum HOM05D000161 ORTHO05D005857 2.6e-18 97.4 93 59.1
arahy.Tifrunner.gnm1.ann1.6HI1EE Arachis hypogaea HOM05D000161 ORTHO05D005857 7.7e-15 85.9 49 77.6
CARHR251650 Cardamine hirsuta HOM05D000161 ORTHO05D115956 1.0e-14 85.5 115 47.8
RcHm_v2.0_Chr6g0298511 Rosa chinensis HOM05D000161 ORTHO05D340689 1.6e-12 78.2 149 38.9
arahy.Tifrunner.gnm1.ann1.1EXH41 Arachis hypogaea HOM05D000161 ORTHO05D003770 6.1e-12 76.3 34 88.2
arahy.Tifrunner.gnm1.ann1.DD88BD Arachis hypogaea HOM05D000161 ORTHO05D086871 1.3e-09 68.6 32 84.4
QL05p043498 Quercus lobata HOM05D020871 ORTHO05D337541 2.0e-07 61.2 31 77.4


User provided reference genes

Program Settings