Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G45.15 Capsicum annuum HOM05D001843 ORTHO05D003411 5.1e-70 267.7 141 100.0
CAN.G1834.1 Capsicum annuum HOM05D000518 ORTHO05D022158 8.1e-44 180.6 129 76.7
CAN.G2194.2 Capsicum annuum HOM05D001843 ORTHO05D003411 1.1e-35 153.7 94 88.3
CAN.G605.3 Capsicum annuum HOM05D001843 ORTHO05D003411 1.5e-34 149.8 94 86.2
CAN.G128.68 Capsicum annuum HOM05D001843 ORTHO05D003411 1.5e-21 106.7 128 55.5
CAN.G916.8 Capsicum annuum HOM05D001843 ORTHO05D003411 1.5e-21 106.7 128 54.7
PGSC0003DMG400023698 Solanum tuberosum HOM05D001843 ORTHO05D003411 1.2e-18 97.1 128 51.6
Peaxi162Scf00696g00316 Petunia axillaris HOM05D001843 ORTHO05D003411 2.9e-17 92.4 128 49.2
Nitab4.5_0001052g0120 Nicotiana tabacum HOM05D001843 ORTHO05D003411 6.5e-17 91.3 129 51.2
Nitab4.5_0005263g0050 Nicotiana tabacum HOM05D001843 ORTHO05D003411 1.1e-16 90.5 129 51.2
Solyc10g080740.2 Solanum lycopersicum HOM05D001843 ORTHO05D003411 1.1e-16 90.5 103 57.3
Sopen10g031280 Solanum pennellii HOM05D001843 ORTHO05D003411 1.1e-16 90.5 103 57.3
PGSC0003DMG400012944 Solanum tuberosum HOM05D001843 ORTHO05D003411 7.9e-15 84.3 60 73.3
Sopen12g010470 Solanum pennellii HOM05D001843 ORTHO05D003411 2.3e-14 82.8 60 70.0
Oeu022965.1 Olea europaea HOM05D001843 ORTHO05D003411 3.0e-14 82.4 60 68.3
SalBow1G2870 Salvia bowleyana HOM05D001843 ORTHO05D003411 5.2e-14 81.6 105 43.8
Solyc12g019960.2 Solanum lycopersicum HOM05D001843 ORTHO05D003411 1.5e-13 80.1 95 51.6
Dinv12047 Davidia involucrata HOM05D001843 ORTHO05D003411 2.0e-13 79.7 60 65.0
Nitab4.5_0002181g0010 Nicotiana tabacum HOM05D001843 ORTHO05D003411 3.3e-13 79.0 95 50.5
unitig_0.g2662 Utricularia gibba HOM05D001843 ORTHO05D003411 3.3e-13 79.0 60 65.0
Nitab4.5_0001408g0030 Nicotiana tabacum HOM05D001843 ORTHO05D003411 4.4e-13 78.6 60 66.7
Cc06_g19160 Coffea canephora HOM05D001843 ORTHO05D003411 9.7e-13 77.4 102 50.0
Actinidia38162 Actinidia chinensis HOM05D001843 ORTHO05D003411 2.2e-12 76.3 60 60.0
Peaxi162Scf00076g00523 Petunia axillaris HOM05D001843 ORTHO05D003411 2.2e-12 76.3 60 68.3
Oeu063780.1 Olea europaea HOM05D001843 ORTHO05D003411 2.8e-12 75.9 103 49.5
SalBow1G3300 Salvia bowleyana HOM05D001843 ORTHO05D003411 4.8e-12 75.1 105 44.8
Migut.K00132 Erythranthe guttata HOM05D001843 ORTHO05D003411 8.2e-12 74.3 89 50.6
GSVIVG01037278001 Vitis vinifera HOM05D001843 ORTHO05D003411 2.4e-11 72.8 146 39.0
AUR62018344 Chenopodium quinoa HOM05D001843 ORTHO05D003411 3.1e-11 72.4 60 61.7
TWI53G1145 Tripterygium wilfordii HOM05D001843 ORTHO05D003411 3.1e-11 72.4 95 46.3
Lj1C1093G8 Lonicera japonica HOM05D001843 ORTHO05D003411 4.1e-11 72.0 128 38.3
Actinidia01818 Actinidia chinensis HOM05D001843 ORTHO05D003411 5.3e-11 71.6 60 58.3
Dinv09713 Davidia involucrata HOM05D001843 ORTHO05D003411 5.3e-11 71.6 94 45.7
unitig_748.g7225 Utricularia gibba HOM05D001843 ORTHO05D003411 5.3e-11 71.6 60 56.7
AUR62030323 Chenopodium quinoa HOM05D001843 ORTHO05D003411 7.0e-11 71.2 60 60.0
SGA_v2.0_scaffold273G46398 Striga asiatica HOM05D001843 ORTHO05D003411 7.0e-11 71.2 60 58.3
Sabra06G0025900 Salix brachista HOM05D001843 ORTHO05D003411 9.1e-11 70.9 54 68.5
SalBow6G4459 Salvia bowleyana HOM05D001843 ORTHO05D003411 9.1e-11 70.9 69 55.1
EL10Ac3g07233 Beta vulgaris HOM05D001843 ORTHO05D003411 1.2e-10 70.5 60 60.0
CSS0047486 Camellia sinensis var. sinensis HOM05D001843 ORTHO05D003411 1.2e-10 70.5 60 55.0
Oeu057790.3 Olea europaea HOM05D001843 ORTHO05D003411 1.2e-10 70.5 60 60.0
Dinv15036 Davidia involucrata HOM05D001843 ORTHO05D003411 1.6e-10 70.1 125 40.8
Hund19098 Selenicereus undatus HOM05D001843 ORTHO05D003411 1.6e-10 70.1 60 58.3
Actinidia09259 Actinidia chinensis HOM05D001843 ORTHO05D003411 2.0e-10 69.7 60 56.7
CSS0047730 Camellia sinensis var. sinensis HOM05D001843 ORTHO05D003411 2.0e-10 69.7 102 43.1
Potri.006G038500 Populus trichocarpa HOM05D001843 ORTHO05D003411 2.0e-10 69.7 54 70.4
Actinidia17692 Actinidia chinensis HOM05D001843 ORTHO05D003411 2.6e-10 69.3 60 55.0
Rhsim03G0039500 Rhododendron simsii HOM05D001843 ORTHO05D003411 2.6e-10 69.3 96 43.8
vmacro07792 Vaccinium macrocarpon HOM05D001843 ORTHO05D003411 5.9e-10 68.2 97 46.4
MSTRG.10791 Avicennia marina HOM05D001843 ORTHO05D003411 7.7e-10 67.8 60 53.3
TAR633G1910 Trochodendron aralioides HOM05D001843 ORTHO05D003411 7.7e-10 67.8 128 39.1
CiPaw.14G113000 Carya illinoinensis HOM05D001843 ORTHO05D003411 1.0e-09 67.4 124 41.1
MSTRG.26156 Avicennia marina HOM05D001843 ORTHO05D003411 1.3e-09 67.0 103 43.7
DCAR_013639 Daucus carota HOM05D001843 ORTHO05D003411 1.7e-09 66.6 121 38.8
SGA_v2.0_scaffold94G28533 Striga asiatica HOM05D001843 ORTHO05D003411 1.7e-09 66.6 60 55.0
TWI74G0484 Tripterygium wilfordii HOM05D001843 ORTHO05D003411 1.7e-09 66.6 60 55.0
Gohir.D09G106800 Gossypium hirsutum HOM05D001843 ORTHO05D003411 2.2e-09 66.2 58 56.9
Gorai.006G124400 Gossypium raimondii HOM05D001843 ORTHO05D003411 2.2e-09 66.2 58 56.9
Sabra16G0169700 Salix brachista HOM05D001843 ORTHO05D003411 2.2e-09 66.2 101 46.5
GSVIVG01033622001 Vitis vinifera HOM05D001843 ORTHO05D003411 2.9e-09 65.9 114 40.4
Atru.chr3.2892 Acer truncatum HOM05D001843 ORTHO05D003411 5.0e-09 65.1 97 42.3
MD11G1184900 Malus domestica HOM05D001843 ORTHO05D003411 5.0e-09 65.1 104 44.2
Gohir.A09G110450 Gossypium hirsutum HOM05D001843 ORTHO05D003411 6.5e-09 64.7 59 55.9
Rhsim13G0209300 Rhododendron simsii HOM05D001843 ORTHO05D003411 6.5e-09 64.7 121 38.8
Ah.04g150960 Amaranthus hybridus HOM05D001843 ORTHO05D003411 8.5e-09 64.3 77 46.8
Ciclev10014151m.g Citrus clementina HOM05D001843 ORTHO05D003411 1.1e-08 63.9 102 43.1
Gohir.A07G119500 Gossypium hirsutum HOM05D001843 ORTHO05D003411 1.1e-08 63.9 63 54.0
Psat0ss3759g0160 Pisum sativum HOM05D001843 ORTHO05D003411 1.1e-08 63.9 59 52.5
TAR369G0365 Trochodendron aralioides HOM05D001843 ORTHO05D003411 1.1e-08 63.9 122 40.2
Haze_23231 Corylus avellana HOM05D001843 ORTHO05D003411 1.5e-08 63.5 122 40.2
LjContig00564g0007413 Lotus japonicus HOM05D001843 ORTHO05D003411 1.5e-08 63.5 59 55.9
TWI74G0935 Tripterygium wilfordii HOM05D001843 ORTHO05D003411 1.5e-08 63.5 94 45.7
TWI77G0714 Tripterygium wilfordii HOM05D001843 ORTHO05D003411 1.9e-08 63.2 93 44.1
Cpa.g.sc157.60 Carica papaya HOM05D001843 ORTHO05D003411 2.5e-08 62.8 121 38.8
Migut.J01661 Erythranthe guttata HOM05D001843 ORTHO05D003411 2.5e-08 62.8 53 56.6
Phvul.006G014200 Phaseolus vulgaris HOM05D001843 ORTHO05D003411 2.5e-08 62.8 128 38.3
Potri.001G275400 Populus trichocarpa HOM05D001843 ORTHO05D003411 2.5e-08 62.8 101 45.5
Duzib150G0706 Durio zibethinus HOM05D001843 ORTHO05D003411 3.2e-08 62.4 68 48.5
Lj6g0018672 Lotus japonicus HOM05D001843 ORTHO05D003411 3.2e-08 62.4 59 54.2
Nn2g14811 Nelumbo nucifera HOM05D001843 ORTHO05D003411 3.2e-08 62.4 54 61.1
RcHm_v2.0_Chr5g0050561 Rosa chinensis HOM05D001843 ORTHO05D003411 3.2e-08 62.4 102 43.1
TAR623G1343 Trochodendron aralioides HOM05D001843 ORTHO05D003411 3.2e-08 62.4 148 33.8
TAR636G1222 Trochodendron aralioides HOM05D001843 ORTHO05D003411 3.2e-08 62.4 147 36.7
Actinidia16384 Actinidia chinensis HOM05D001843 ORTHO05D003411 4.2e-08 62.0 124 35.5
Actinidia24454 Actinidia chinensis HOM05D001843 ORTHO05D003411 4.2e-08 62.0 124 35.5
COL.COLO4_32762 Corchorus olitorius HOM05D001843 ORTHO05D003411 4.2e-08 62.0 59 52.5
Medtr5g089510 Medicago truncatula HOM05D001843 ORTHO05D003411 4.2e-08 62.0 59 52.5
Eucgr.C04150 Eucalyptus grandis HOM05D001843 ORTHO05D003411 5.5e-08 61.6 99 44.4
Gohir.D13G222500 Gossypium hirsutum HOM05D001843 ORTHO05D003411 5.5e-08 61.6 59 50.8
Gorai.013G253600 Gossypium raimondii HOM05D001843 ORTHO05D003411 5.5e-08 61.6 59 50.8
PSO384G2306 Papaver somniferum HOM05D001843 ORTHO05D003411 5.5e-08 61.6 137 38.0
QL07p010324 Quercus lobata HOM05D001843 ORTHO05D003411 5.5e-08 61.6 66 50.0
Sed0022809 Sechium edule HOM05D001843 ORTHO05D003411 5.5e-08 61.6 54 59.3
CiPaw.09G047400 Carya illinoinensis HOM05D001843 ORTHO05D003411 7.2e-08 61.2 60 51.7
PSO339G3633 Papaver somniferum HOM05D001843 ORTHO05D003411 7.2e-08 61.2 78 44.9
VMungo0540G0682 Vigna mungo HOM05D001843 ORTHO05D003411 7.2e-08 61.2 128 39.1
Duzib168G0131 Durio zibethinus HOM05D001843 ORTHO05D003411 1.6e-07 60.1 54 53.7
FvH4_3g27840 Fragaria vesca HOM05D001843 ORTHO05D003411 1.6e-07 60.1 102 42.2
FAN11G3218 Fragaria x ananassa HOM05D001843 ORTHO05D003411 1.6e-07 60.1 102 42.2
FAN16G1122 Fragaria x ananassa HOM05D001843 ORTHO05D003411 1.6e-07 60.1 102 42.2
Gorai.001G133700 Gossypium raimondii HOM05D001843 ORTHO05D003411 1.6e-07 60.1 105 42.9
PSO339G4474 Papaver somniferum HOM05D001843 ORTHO05D003411 1.6e-07 60.1 137 37.2
FAN25G3852 Fragaria x ananassa HOM05D001843 ORTHO05D003411 2.1e-07 59.7 102 42.2
Gohir.D07G123700 Gossypium hirsutum HOM05D001843 ORTHO05D003411 2.1e-07 59.7 105 41.9
Actinidia06965 Actinidia chinensis HOM05D001843 ORTHO05D003411 2.7e-07 59.3 124 33.1
CSS0033106 Camellia sinensis var. sinensis HOM05D001843 ORTHO05D003411 2.7e-07 59.3 122 36.1
Glyma.02G279500 Glycine max HOM05D001843 ORTHO05D003411 2.7e-07 59.3 59 52.5
MBI14_g16108_MAGBIO Magnolia biondii HOM05D001843 ORTHO05D003411 2.7e-07 59.3 59 54.2
PSO384G4955 Papaver somniferum HOM05D001843 ORTHO05D003411 2.7e-07 59.3 78 43.6
Ca_01866_v3 Cicer arietinum L. HOM05D001843 ORTHO05D003411 3.6e-07 58.9 59 50.8
Gohir.A13G218800 Gossypium hirsutum HOM05D001843 ORTHO05D003411 3.6e-07 58.9 59 49.2
Medtr0175s0030 Medicago truncatula HOM05D001843 ORTHO05D003411 3.6e-07 58.9 127 38.6
Nn7g36713 Nelumbo nucifera HOM05D001843 ORTHO05D003411 3.6e-07 58.9 93 38.7
Sc25g0005440 Simmondsia chinensis HOM05D001843 ORTHO05D003411 3.6e-07 58.9 101 41.6
Thecc.09G248200 Theobroma cacao HOM05D001843 ORTHO05D003411 3.6e-07 58.9 59 52.5
Gohir.A05G070900 Gossypium hirsutum HOM05D001843 ORTHO05D003411 4.7e-07 58.5 59 50.8
HanXRQChr04g0096761 Helianthus annuus HOM05D001843 ORTHO05D003411 4.7e-07 58.5 54 59.3
ECA238G4638 Erigeron canadensis HOM05D001843 ORTHO05D003411 6.1e-07 58.2 53 58.5
MBI15_g24196_MAGBIO Magnolia biondii HOM05D001843 ORTHO05D003411 6.1e-07 58.2 59 50.8
FAN21G1175 Fragaria x ananassa HOM05D001843 ORTHO05D003411 8.0e-07 57.8 102 41.2
Glyma.07G231800 Glycine max HOM05D001843 ORTHO05D003411 8.0e-07 57.8 128 35.9
Lj2A818G16 Lonicera japonica HOM05D001843 ORTHO05D003411 8.0e-07 57.8 94 42.6
Lalb_Chr10g0106241 Lupinus albus HOM05D001843 ORTHO05D003411 8.0e-07 57.8 60 50.0
MD03G1165600 Malus domestica HOM05D001843 ORTHO05D003411 8.0e-07 57.8 122 36.1
QL01p017120 Quercus lobata HOM05D001843 ORTHO05D003411 8.0e-07 57.8 122 36.9
HPP92_023797 Vanilla planifolia HOM05D001843 ORTHO05D003411 8.0e-07 57.8 60 53.3
Aa31LG1G8820 Aethionema arabicum HOM05D001843 ORTHO05D003411 1.0e-06 57.4 53 54.7
Aqoxy2G00385 Aquilegia oxysepala HOM05D001843 ORTHO05D003411 1.0e-06 57.4 122 34.4
ClCG03G012560 Citrullus lanatus HOM05D001843 ORTHO05D003411 1.0e-06 57.4 59 49.2
Zm00001eb308540 Zea mays HOM05D001843 ORTHO05D003411 1.0e-06 57.4 69 49.3
arahy.Tifrunner.gnm1.ann1.7N5RT2 Arachis hypogaea HOM05D001843 ORTHO05D003411 1.4e-06 57.0 102 39.2
arahy.Tifrunner.gnm1.ann1.N51291 Arachis hypogaea HOM05D001843 ORTHO05D003411 1.4e-06 57.0 102 39.2
CiPaw.13G150400 Carya illinoinensis HOM05D001843 ORTHO05D003411 1.4e-06 57.0 95 40.0
Lsat_1_v5_gn_5_157981 Lactuca sativa HOM05D001843 ORTHO05D003411 1.4e-06 57.0 78 39.7
Phvul.008G201200 Phaseolus vulgaris HOM05D001843 ORTHO05D003411 1.4e-06 57.0 54 55.6
CDE01G0707 Ceratophyllum demersum HOM05D001843 ORTHO05D003411 1.8e-06 56.6 63 50.8
Manes.02G139200 Manihot esculenta HOM05D001843 ORTHO05D003411 1.8e-06 56.6 122 35.2
HPP92_002978 Vanilla planifolia HOM05D001843 ORTHO05D003411 1.8e-06 56.6 60 55.0
Zm00001eb097300 Zea mays HOM05D001843 ORTHO05D003411 1.8e-06 56.6 59 54.2
CANSAT54G2892 Cannabis sativa HOM05D001843 ORTHO05D003411 2.3e-06 56.2 101 41.6
Gohir.D05G073800 Gossypium hirsutum HOM05D001843 ORTHO05D003411 2.3e-06 56.2 59 49.2
Gorai.009G074900 Gossypium raimondii HOM05D001843 ORTHO05D003411 2.3e-06 56.2 59 49.2
Lalb_Chr04g0249221 Lupinus albus HOM05D001843 ORTHO05D003411 2.3e-06 56.2 60 48.3
vmacro04032 Vaccinium macrocarpon HOM05D001843 ORTHO05D003411 2.3e-06 56.2 54 53.7
VMungo0647G1982 Vigna mungo HOM05D001843 ORTHO05D003411 3.0e-06 55.8 78 43.6
DCAR_008578 Daucus carota HOM05D001843 ORTHO05D003411 4.0e-06 55.5 54 61.1
Glyma.20G040700 Glycine max HOM05D001843 ORTHO05D003411 4.0e-06 55.5 128 35.2
MELO3C015113.2 Cucumis melo HOM05D001843 ORTHO05D003411 5.2e-06 55.1 54 51.9
CsaV3_1G043450 Cucumis sativus L. HOM05D001843 ORTHO05D003411 5.2e-06 55.1 54 51.9
Lsat_1_v5_gn_2_36520 Lactuca sativa HOM05D001843 ORTHO05D003411 5.2e-06 55.1 78 41.0
Manes.01G178600 Manihot esculenta HOM05D001843 ORTHO05D003411 5.2e-06 55.1 54 51.9
HanXRQChr03g0061551 Helianthus annuus HOM05D001843 ORTHO05D003411 6.7e-06 54.7 60 41.7
Lalb_Chr17g0347901 Lupinus albus HOM05D001843 ORTHO05D003411 8.8e-06 54.3 60 50.0


User provided reference genes

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