Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G449.73 Capsicum annuum HOM05D004869 ORTHO05D005893 0.0e+00 1656.3 830 100.0
Sopen05g032860 Solanum pennellii HOM05D004869 ORTHO05D005893 0.0e+00 1531.5 830 89.5
Solyc05g054370.2 Solanum lycopersicum HOM05D004869 ORTHO05D005893 0.0e+00 1530.8 830 89.5
PGSC0003DMG400023436 Solanum tuberosum HOM05D004869 ORTHO05D005893 0.0e+00 1529.6 830 89.5
Peaxi162Scf00065g01213 Petunia axillaris HOM05D004869 ORTHO05D005893 0.0e+00 1416.0 830 83.0
Sopen01g027900 Solanum pennellii HOM05D004869 ORTHO05D005893 0.0e+00 1410.2 830 82.7
Solyc01g066310.4 Solanum lycopersicum HOM05D004869 ORTHO05D005893 0.0e+00 1399.8 830 82.0
Nitab4.5_0008670g0020 Nicotiana tabacum HOM05D004869 ORTHO05D005893 0.0e+00 1363.2 832 81.4
Nitab4.5_0000695g0140 Nicotiana tabacum HOM05D004869 ORTHO05D005893 0.0e+00 1362.8 830 81.8
Oeu016255.1 Olea europaea HOM05D004869 ORTHO05D005893 0.0e+00 1330.1 837 77.4
Rhsim04G0226400 Rhododendron simsii HOM05D004869 ORTHO05D005893 0.0e+00 1317.8 830 76.6
Cc03_g01500 Coffea canephora HOM05D004869 ORTHO05D005893 0.0e+00 1308.1 831 77.3
Migut.N00074 Erythranthe guttata HOM05D004869 ORTHO05D005893 0.0e+00 1303.1 830 74.8
vmacro08186 Vaccinium macrocarpon HOM05D004869 ORTHO05D005893 0.0e+00 1298.9 852 74.8
Actinidia40299 Actinidia chinensis HOM05D004869 ORTHO05D005893 0.0e+00 1295.4 831 76.3
Dinv44350 Davidia involucrata HOM05D004869 ORTHO05D005893 0.0e+00 1294.3 817 76.1
Hma1.2p1_1352F.1_g277460 Hydrangea macrophylla HOM05D004869 ORTHO05D005893 0.0e+00 1285.4 831 75.5
Cfa015427 Carpinus fangiana HOM05D004869 ORTHO05D005893 0.0e+00 1259.6 832 73.6
QL06p010392 Quercus lobata HOM05D004869 ORTHO05D005893 0.0e+00 1257.7 832 73.1
HanXRQChr17g0535991 Helianthus annuus HOM05D004869 ORTHO05D005893 0.0e+00 1256.1 830 73.1
Prupe.1G131800 Prunus persica HOM05D004869 ORTHO05D005893 0.0e+00 1251.9 818 74.1
MD16G1164100 Malus domestica HOM05D004869 ORTHO05D005893 0.0e+00 1251.5 815 74.6
ECA246G3101 Erigeron canadensis HOM05D004869 ORTHO05D005893 0.0e+00 1248.0 831 72.1
MD13G1164300 Malus domestica HOM05D004869 ORTHO05D005893 0.0e+00 1246.9 815 74.1
Atru.chr4.2905 Acer truncatum HOM05D004869 ORTHO05D005893 0.0e+00 1246.5 831 73.2
CiPaw.01G145300 Carya illinoinensis HOM05D004869 ORTHO05D005893 0.0e+00 1246.1 831 72.6
Thecc.04G289100 Theobroma cacao HOM05D004869 ORTHO05D005893 0.0e+00 1243.0 831 73.2
Cpa.g.sc50.161 Carica papaya HOM05D004869 ORTHO05D005893 0.0e+00 1242.3 831 73.5
THA.LOC104802695 Tarenaya hassleriana HOM05D004869 ORTHO05D005893 0.0e+00 1241.5 827 72.8
RcHm_v2.0_Chr4g0423401 Rosa chinensis HOM05D004869 ORTHO05D005893 0.0e+00 1240.7 816 72.7
VMungo1309G2596 Vigna mungo HOM05D004869 ORTHO05D005893 0.0e+00 1240.3 831 72.6
GSVIVG01035107001 Vitis vinifera HOM05D004869 ORTHO05D005893 0.0e+00 1240.3 830 73.1
Lj6A681T39 Lonicera japonica HOM05D004869 ORTHO05D005893 0.0e+00 1239.6 828 73.3
arahy.Tifrunner.gnm1.ann1.ZXWI6N Arachis hypogaea HOM05D004869 ORTHO05D005893 0.0e+00 1238.4 832 74.5
Lalb_Chr15g0086081 Lupinus albus HOM05D004869 ORTHO05D005893 0.0e+00 1237.2 832 73.6
Lsat_1_v5_gn_3_21560 Lactuca sativa HOM05D004869 ORTHO05D005893 0.0e+00 1235.3 867 69.8
CANSAT78G0178 Cannabis sativa HOM05D004869 ORTHO05D005893 0.0e+00 1230.3 831 71.5
Lalb_Chr20g0117401 Lupinus albus HOM05D004869 ORTHO05D005893 0.0e+00 1229.9 831 73.0
Glyma.09G042000 Glycine max HOM05D004869 ORTHO05D005893 0.0e+00 1228.0 831 72.0
COL.COLO4_13820 Corchorus olitorius HOM05D004869 ORTHO05D005893 0.0e+00 1226.8 832 72.4
TWI73G0801 Tripterygium wilfordii HOM05D004869 ORTHO05D005893 0.0e+00 1226.8 831 72.2
Lj6g0019427 Lotus japonicus HOM05D004869 ORTHO05D005893 0.0e+00 1226.5 820 73.8
Sabra10G0006600 Salix brachista HOM05D004869 ORTHO05D005893 0.0e+00 1225.7 838 71.1
Glyma.15G150900 Glycine max HOM05D004869 ORTHO05D005893 0.0e+00 1223.8 831 71.6
FvH4_4g18700 Fragaria vesca HOM05D004869 ORTHO05D005893 0.0e+00 1222.6 816 71.8
Potri.010G010448 Populus trichocarpa HOM05D004869 ORTHO05D005893 0.0e+00 1222.6 832 71.8
AT3G06810 Arabidopsis thaliana HOM05D004869 ORTHO05D005893 0.0e+00 1222.2 828 71.1
Potri.008G219000 Populus trichocarpa HOM05D004869 ORTHO05D005893 0.0e+00 1221.8 831 71.2
Duzib212G0051 Durio zibethinus HOM05D004869 ORTHO05D005893 0.0e+00 1219.5 831 71.5
Carub.0003s0635 Capsella rubella HOM05D004869 ORTHO05D005893 0.0e+00 1219.1 828 71.5
MELO3C006684.2 Cucumis melo HOM05D004869 ORTHO05D005893 0.0e+00 1219.1 831 70.8
Gorai.005G061800 Gossypium raimondii HOM05D004869 ORTHO05D005893 0.0e+00 1218.8 833 72.0
Phvul.009G250700 Phaseolus vulgaris HOM05D004869 ORTHO05D005893 0.0e+00 1217.6 835 71.6
ClCG05G006260 Citrullus lanatus HOM05D004869 ORTHO05D005893 0.0e+00 1214.5 831 70.9
BraA05t22852Z Brassica rapa HOM05D004869 ORTHO05D005893 0.0e+00 1213.4 829 71.8
Sc19g0005490 Simmondsia chinensis HOM05D004869 ORTHO05D005893 0.0e+00 1213.4 788 73.6
DCAR_027053 Daucus carota HOM05D004869 ORTHO05D005893 0.0e+00 1213.0 812 73.3
AL3G17930 Arabidopsis lyrata HOM05D004869 ORTHO05D005893 0.0e+00 1211.8 828 70.8
Ca_01910_v3 Cicer arietinum L. HOM05D004869 ORTHO05D005893 0.0e+00 1211.1 831 72.2
CsaV3_3G014880 Cucumis sativus L. HOM05D004869 ORTHO05D005893 0.0e+00 1210.7 831 70.3
Thhalv10020074m.g Eutrema salsugineum HOM05D004869 ORTHO05D005893 0.0e+00 1209.9 828 70.7
FAN12G0537 Fragaria x ananassa HOM05D004869 ORTHO05D005893 0.0e+00 1209.9 825 70.7
CARHR081430 Cardamine hirsuta HOM05D004869 ORTHO05D005893 0.0e+00 1206.8 828 70.9
C05p60510 Brassica napus HOM05D004869 ORTHO05D005893 0.0e+00 1206.4 829 71.5
Gohir.A02G051000 Gossypium hirsutum HOM05D004869 ORTHO05D005893 0.0e+00 1206.4 831 71.0
Aa31LG5G17400 Aethionema arabicum HOM05D004869 ORTHO05D005893 0.0e+00 1206.0 828 70.7
A05p41290 Brassica napus HOM05D004869 ORTHO05D005893 0.0e+00 1206.0 829 71.3
Aqoxy5G00789 Aquilegia oxysepala HOM05D004869 ORTHO05D005893 0.0e+00 1204.9 835 71.6
Sed0001345 Sechium edule HOM05D004869 ORTHO05D005893 0.0e+00 1204.9 833 69.7
Ciclev10004291m.g Citrus clementina HOM05D004869 ORTHO05D005893 0.0e+00 1204.5 830 73.3
FAN17G0377 Fragaria x ananassa HOM05D004869 ORTHO05D005893 0.0e+00 1203.3 833 69.7
BolC5t34705H Brassica oleracea HOM05D004869 ORTHO05D005893 0.0e+00 1202.6 829 71.4
PSO210G1050 Papaver somniferum HOM05D004869 ORTHO05D005893 0.0e+00 1202.6 835 71.0
TWI53G1493 Tripterygium wilfordii HOM05D004869 ORTHO05D005893 0.0e+00 1199.5 831 70.8
Hund20507 Selenicereus undatus HOM05D004869 ORTHO05D005893 0.0e+00 1199.1 835 69.9
FAN12G1313 Fragaria x ananassa HOM05D004869 ORTHO05D005893 0.0e+00 1198.0 855 68.5
PSO832G2232 Papaver somniferum HOM05D004869 ORTHO05D005893 0.0e+00 1197.2 836 70.8
Gohir.D02G055900 Gossypium hirsutum HOM05D004869 ORTHO05D005893 0.0e+00 1193.7 833 71.1
Ciclev10004342m.g Citrus clementina HOM05D004869 ORTHO05D005893 0.0e+00 1190.3 830 70.6
Sp3g05780 Schrenkiella parvula HOM05D004869 ORTHO05D005893 0.0e+00 1185.2 828 69.8
SGA_v2.0_scaffold119G32706 Striga asiatica HOM05D004869 ORTHO05D005893 0.0e+00 1182.9 842 69.0
EL10Ac3g06663 Beta vulgaris HOM05D004869 ORTHO05D005893 0.0e+00 1182.5 835 68.1
CDE11G0521 Ceratophyllum demersum HOM05D004869 ORTHO05D005893 0.0e+00 1166.4 834 69.1
Zm00001eb111400 Zea mays HOM05D004869 ORTHO05D005893 0.0e+00 1144.8 835 67.8
ATR0693G241 Amborella trichopoda HOM05D004869 ORTHO05D005893 0.0e+00 1141.3 832 67.7
Os07g0675000 Oryza sativa ssp. japonica HOM05D004869 ORTHO05D005893 0.0e+00 1136.3 834 67.5
Nn3g21544 Nelumbo nucifera HOM05D004869 ORTHO05D005893 0.0e+00 1134.4 775 71.6
Manes.03G198800 Manihot esculenta HOM05D004869 ORTHO05D005893 0.0e+00 1132.5 831 67.7
AUR62018045 Chenopodium quinoa HOM05D004869 ORTHO05D005893 0.0e+00 1117.8 834 66.3
AUR62015247 Chenopodium quinoa HOM05D004869 ORTHO05D005893 0.0e+00 1115.9 834 65.9
HPP92_003120 Vanilla planifolia HOM05D004869 ORTHO05D005893 0.0e+00 1090.1 834 65.6
TAR365G0733 Trochodendron aralioides HOM05D004869 ORTHO05D005893 1.7e-306 1055.8 839 64.8
Ah.04g153720 Amaranthus hybridus HOM05D004869 ORTHO05D005893 1.3e-301 1039.6 856 62.9
MBI18_g44774_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 8.1e-301 1036.9 802 65.1
Eucgr.B01578 Eucalyptus grandis HOM05D004869 ORTHO05D005893 4.5e-299 1031.2 719 68.6
Pp3c22_4180 Physcomitrium patens HOM05D004869 ORTHO05D005893 1.3e-295 1019.6 836 61.5
arahy.Tifrunner.gnm1.ann1.YH0B1H Arachis hypogaea HOM05D004869 ORTHO05D005893 1.3e-290 1003.0 823 64.6
Pp3c18_21710 Physcomitrium patens HOM05D004869 ORTHO05D005893 2.9e-290 1001.9 829 60.3
SMO202G0033 Selaginella moellendorffii HOM05D004869 ORTHO05D005893 1.2e-283 979.9 834 57.6
Mapoly0111s0015 Marchantia polymorpha HOM05D004869 ORTHO05D005893 1.1e-278 963.4 825 57.7
Haze_01165 Corylus avellana HOM05D004869 ORTHO05D005893 2.5e-278 962.2 847 60.3
SMO169G0300 Selaginella moellendorffii HOM05D004869 ORTHO05D005893 2.0e-254 882.9 840 54.2
AagrBONN_evm.TU.Sc2ySwM_228.2629 Anthoceros agrestis HOM05D004869 ORTHO05D005893 1.9e-249 866.3 713 59.5
CBR_g54445 Chara braunii HOM05D004869 ORTHO05D005893 1.8e-247 859.8 924 51.6
TPR.G26039 Trifolium pratense HOM05D004869 ORTHO05D005893 2.3e-247 859.4 590 71.5
Medtr2g435800 Medicago truncatula HOM05D004869 ORTHO05D005893 7.5e-230 801.2 576 68.8
SHI00220 Sapria himalayana HOM05D004869 ORTHO05D005893 1.0e-223 780.8 616 62.5
Psat1g156400 Pisum sativum HOM05D004869 ORTHO05D005893 5.6e-217 758.4 571 66.2
DCAR_000477 Daucus carota HOM05D004869 ORTHO05D005893 4.1e-212 742.3 486 73.3
CSS0035117 Camellia sinensis var. sinensis HOM05D004869 ORTHO05D005893 9.2e-204 714.5 460 76.1
unitig_26.g10563 Utricularia gibba HOM05D004869 ORTHO05D005893 3.5e-203 712.6 490 72.2
BcaNung06666 Brassica carinata HOM05D004869 ORTHO05D005893 4.3e-201 705.7 495 72.1
Cre16.g675850 Chlamydomonas reinhardtii HOM05D004869 ORTHO05D005893 5.6e-201 705.3 915 44.7
PRCOL_00002960 Prasinoderma coloniale HOM05D004869 ORTHO05D005893 7.1e-172 608.6 801 42.2
Hma1.2p1_0804F.1_g221110 Hydrangea macrophylla HOM05D004869 ORTHO05D005893 7.9e-163 578.6 381 72.7
BcaC05g30559 Brassica carinata HOM05D004869 ORTHO05D005893 5.3e-151 539.3 632 49.1
Oeu031983.1 Olea europaea HOM05D004869 ORTHO05D005893 1.6e-134 484.6 430 58.1
MCO01G041 Micromonas commoda HOM05D004869 ORTHO05D005893 4.4e-121 439.9 427 53.6
MBI18_g37159_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 1.6e-118 431.4 425 57.9
DCAR_023301 Daucus carota HOM05D004869 ORTHO05D005893 5.9e-118 429.5 298 69.5
Cfa024444 Carpinus fangiana HOM05D004869 ORTHO05D005893 8.6e-101 372.5 438 44.7
Cfa022681 Carpinus fangiana HOM05D004869 ORTHO05D005893 6.8e-98 362.8 426 44.8
Medtr2g436030 Medicago truncatula HOM05D004869 ORTHO05D005893 6.8e-98 362.8 230 80.4
QL06p007479 Quercus lobata HOM05D004869 ORTHO05D005893 2.1e-91 341.3 233 72.5
Nn1g04010 Nelumbo nucifera HOM05D004869 ORTHO05D005893 8.6e-85 319.3 190 82.6
Rhsim04G0225600 Rhododendron simsii HOM05D004869 ORTHO05D005893 7.1e-79 299.7 322 52.5
TPR.G13211 Trifolium pratense HOM05D004869 ORTHO05D005893 4.8e-75 287.0 170 86.5
unitig_26.g10564 Utricularia gibba HOM05D004869 ORTHO05D005893 1.7e-64 251.9 250 51.6
SEGI_30643 Sequoiadendron giganteum HOM05D004869 ORTHO05D005893 2.0e-57 228.4 214 56.1
QL93p0200_0027 Quercus lobata HOM05D004869 ORTHO05D005893 8.7e-53 213.0 157 70.1
MCO01G771 Micromonas commoda HOM05D004869 ORTHO05D005893 3.7e-51 207.6 374 35.8
Rhsim04G0225700 Rhododendron simsii HOM05D004869 ORTHO05D005893 3.2e-47 194.5 133 76.7
Lsat_1_v5_gn_3_21640 Lactuca sativa HOM05D004869 ORTHO05D005893 2.8e-43 181.4 138 71.7
RcHm_v2.0_Chr3g0480631 Rosa chinensis HOM05D004869 ORTHO05D005893 2.6e-41 174.9 123 66.7
Rhsim04G0226200 Rhododendron simsii HOM05D004869 ORTHO05D005893 3.4e-41 174.5 150 65.3
HanXRQChr01g0024801 Helianthus annuus HOM05D004869 ORTHO05D005893 3.2e-31 141.4 174 44.3
RcHm_v2.0_Chr6g0311831 Rosa chinensis HOM05D004869 ORTHO05D005893 1.2e-30 139.4 111 63.1
SEGI_32872 Sequoiadendron giganteum HOM05D004869 ORTHO05D005893 6.3e-27 127.1 89 73.0
Lsat_1_v5_gn_5_23780 Lactuca sativa HOM05D004869 ORTHO05D005893 2.4e-26 125.2 170 42.4
SEGI_25692 Sequoiadendron giganteum HOM05D004869 ORTHO05D005893 1.6e-25 122.5 111 50.5
SalBow5G3485 Salvia bowleyana HOM05D004869 ORTHO05D005893 1.0e-24 119.8 69 87.0
SMO367G1086 Selaginella moellendorffii HOM05D001528 ORTHO05D006464 2.9e-24 118.2 287 31.4
TPR.G25902 Trifolium pratense HOM05D000002 ORTHO05D000001 6.5e-24 117.1 73 71.2
MBI18_g46557_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 1.6e-22 112.5 93 60.2
MBI18_g23297_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 2.7e-22 111.7 93 59.1
Haze_26447 Corylus avellana HOM05D001528 ORTHO05D006464 1.8e-21 109.0 360 28.6
BNapus_Darmor_BZH_scaffold_117p00100 Brassica napus HOM05D004869 ORTHO05D005893 4.0e-21 107.8 73 80.8
PGSC0003DMG400027831 Solanum tuberosum HOM05D004869 ORTHO05D005893 4.0e-21 107.8 59 91.5
BolC1t05585H Brassica oleracea HOM05D004869 ORTHO05D005893 7.5e-20 103.6 65 86.2
TPR.G15436 Trifolium pratense HOM05D004869 ORTHO05D005893 7.5e-20 103.6 73 68.5
AagrBONN_evm.TU.Sc2ySwM_117.3343 Anthoceros agrestis HOM05D001528 ORTHO05D006464 4.8e-19 100.9 269 30.1
Pp3c3_14940 Physcomitrium patens HOM05D001528 ORTHO05D006464 6.3e-19 100.5 293 28.0
CAN.G65.194 Capsicum annuum HOM05D001528 ORTHO05D006464 9.1e-18 96.7 315 27.3
MBI15_g19419_MAGBIO Magnolia biondii HOM05D001528 ORTHO05D006464 9.1e-18 96.7 319 26.0
Prupe.6G097600 Prunus persica HOM05D001528 ORTHO05D006464 9.1e-18 96.7 327 24.5
Aqoxy4G03235 Aquilegia oxysepala HOM05D001528 ORTHO05D006464 1.2e-17 96.3 319 25.7
Gorai.006G120500 Gossypium raimondii HOM05D001528 ORTHO05D006464 1.2e-17 96.3 326 26.1
Mapoly0154s0036 Marchantia polymorpha HOM05D001528 ORTHO05D006464 1.2e-17 96.3 284 30.3
unitig_747.g22005 Utricularia gibba HOM05D001528 ORTHO05D006464 1.2e-17 96.3 330 26.4
MD03G1116100 Malus domestica HOM05D001528 ORTHO05D006464 5.9e-17 94.0 327 24.5
Sopen06g029920 Solanum pennellii HOM05D001528 ORTHO05D006464 7.7e-17 93.6 328 26.5
PRCOL_00001565 Prasinoderma coloniale HOM05D001528 ORTHO05D006464 1.0e-16 93.2 292 27.7
Rhsim08G0043300 Rhododendron simsii HOM05D001528 ORTHO05D006464 1.7e-16 92.4 319 25.7
Lsat_1_v5_gn_2_97980 Lactuca sativa HOM05D001528 ORTHO05D006464 2.9e-16 91.7 332 25.9
Solyc06g073560.4 Solanum lycopersicum HOM05D001528 ORTHO05D006464 2.9e-16 91.7 317 26.8
PSO339G5049 Papaver somniferum HOM05D001528 ORTHO05D006464 8.5e-16 90.1 319 25.1
BcaC09g47921 Brassica carinata HOM05D004869 ORTHO05D005893 1.5e-15 89.4 57 84.2
PSO384G1162 Papaver somniferum HOM05D001528 ORTHO05D006464 1.5e-15 89.4 319 25.1
Cre06.g296400 Chlamydomonas reinhardtii HOM05D001528 ORTHO05D006464 3.2e-15 88.2 321 25.5
AUR62025007 Chenopodium quinoa HOM05D001528 ORTHO05D006464 7.2e-15 87.0 317 25.2
Medtr0837s0010 Medicago truncatula HOM05D001528 ORTHO05D006464 6.1e-14 84.0 279 26.9
Lsat_1_v5_gn_4_34540 Lactuca sativa HOM05D004869 ORTHO05D005893 1.0e-13 83.2 196 31.6
Hma1.2p1_1662F.1_g296280 Hydrangea macrophylla HOM05D004869 ORTHO05D005893 4.0e-13 81.3 53 69.8
Cfa026122 Carpinus fangiana HOM05D001528 ORTHO05D006464 2.6e-12 78.6 289 25.3
PRCOL_00007230 Prasinoderma coloniale HOM05D001528 ORTHO05D006464 1.3e-11 76.3 296 25.7
Cfa027299 Carpinus fangiana HOM05D001528 ORTHO05D006464 1.4e-10 72.8 309 23.6
PRCOL_00006254 Prasinoderma coloniale HOM05D001528 ORTHO05D006464 7.0e-10 70.5 296 26.0
Medtr2057s0010 Medicago truncatula HOM05D001528 ORTHO05D265507 5.0e-08 64.3 192 24.0


User provided reference genes

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