Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G410.44 Capsicum annuum HOM05D005018 ORTHO05D006786 0.0e+00 1407.9 707 100.0
Sopen01g030230 Solanum pennellii HOM05D005018 ORTHO05D006786 0.0e+00 1339.7 708 95.2
Peaxi162Scf00087g00314 Petunia axillaris HOM05D005018 ORTHO05D006786 0.0e+00 1278.5 702 92.0
Nitab4.5_0000316g0160 Nicotiana tabacum HOM05D005018 ORTHO05D006786 0.0e+00 1247.3 720 88.3
Dinv15533 Davidia involucrata HOM05D005018 ORTHO05D006786 0.0e+00 1162.9 706 82.9
SalBow6G7214 Salvia bowleyana HOM05D005018 ORTHO05D006786 0.0e+00 1159.4 709 81.7
Migut.D00797 Erythranthe guttata HOM05D005018 ORTHO05D006786 0.0e+00 1159.1 703 82.1
TAR625G0766 Trochodendron aralioides HOM05D005018 ORTHO05D006786 0.0e+00 1151.3 693 82.4
CiPaw.03G118700 Carya illinoinensis HOM05D005018 ORTHO05D006786 0.0e+00 1150.2 704 81.8
Manes.02G085200 Manihot esculenta HOM05D005018 ORTHO05D006786 0.0e+00 1146.7 627 89.6
Actinidia06572 Actinidia chinensis HOM05D005018 ORTHO05D006786 0.0e+00 1146.3 706 82.6
MD02G1260800 Malus domestica HOM05D005018 ORTHO05D006786 0.0e+00 1145.6 688 83.1
Glyma.05G193600 Glycine max HOM05D005018 ORTHO05D006786 0.0e+00 1144.8 627 89.0
Duzib264G1136 Durio zibethinus HOM05D005018 ORTHO05D006786 0.0e+00 1144.4 687 83.1
Gorai.006G006100 Gossypium raimondii HOM05D005018 ORTHO05D006786 0.0e+00 1144.4 630 88.6
Nn5g28451 Nelumbo nucifera HOM05D005018 ORTHO05D006786 0.0e+00 1144.0 669 84.5
CsaV3_6G041220 Cucumis sativus L. HOM05D005018 ORTHO05D006786 0.0e+00 1143.6 699 82.1
Gohir.A09G005200 Gossypium hirsutum HOM05D005018 ORTHO05D006786 0.0e+00 1143.6 637 87.8
QL10p041655 Quercus lobata HOM05D005018 ORTHO05D006786 0.0e+00 1142.5 726 80.2
arahy.Tifrunner.gnm1.ann1.YY52IF Arachis hypogaea HOM05D005018 ORTHO05D006786 0.0e+00 1142.1 642 87.2
Cfa002185 Carpinus fangiana HOM05D005018 ORTHO05D006786 0.0e+00 1142.1 707 82.2
RcHm_v2.0_Chr1g0331701 Rosa chinensis HOM05D005018 ORTHO05D006786 0.0e+00 1141.3 704 82.0
Gohir.D09G004500 Gossypium hirsutum HOM05D005018 ORTHO05D006786 0.0e+00 1140.9 630 88.4
CANSAT01G0968 Cannabis sativa HOM05D005018 ORTHO05D006786 0.0e+00 1139.4 691 82.6
QL10p041885 Quercus lobata HOM05D005018 ORTHO05D006786 0.0e+00 1139.4 726 80.0
Sed0008983 Sechium edule HOM05D005018 ORTHO05D006786 0.0e+00 1138.6 703 81.5
MSTRG.21275 Avicennia marina HOM05D005018 ORTHO05D006786 0.0e+00 1137.5 700 81.4
CSS0041776 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 0.0e+00 1136.7 701 81.3
Potri.005G066300 Populus trichocarpa HOM05D005018 ORTHO05D006786 0.0e+00 1136.7 626 89.6
Glyma.08G001700 Glycine max HOM05D005018 ORTHO05D006786 0.0e+00 1135.9 624 88.5
Medtr8g094030 Medicago truncatula HOM05D005018 ORTHO05D006786 0.0e+00 1135.6 707 81.6
TWI79G0394 Tripterygium wilfordii HOM05D005018 ORTHO05D006786 0.0e+00 1134.8 652 86.0
VMungo0251G2317 Vigna mungo HOM05D005018 ORTHO05D006786 0.0e+00 1134.8 705 81.0
MELO3C024598.2 Cucumis melo HOM05D005018 ORTHO05D006786 0.0e+00 1133.6 699 82.0
arahy.Tifrunner.gnm1.ann1.IZT9KT Arachis hypogaea HOM05D005018 ORTHO05D006786 0.0e+00 1133.2 661 84.9
CSS0009965 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 0.0e+00 1132.1 725 79.2
Lalb_Chr07g0184291 Lupinus albus HOM05D005018 ORTHO05D006786 0.0e+00 1130.9 659 85.0
PGR119G0715 Punica granatum HOM05D005018 ORTHO05D006786 0.0e+00 1130.9 659 84.7
AUR62006851 Chenopodium quinoa HOM05D005018 ORTHO05D006786 0.0e+00 1130.5 698 81.4
THA.LOC104804457 Tarenaya hassleriana HOM05D005018 ORTHO05D006786 0.0e+00 1130.2 627 87.9
Lj4g0009092 Lotus japonicus HOM05D005018 ORTHO05D006786 0.0e+00 1127.1 671 83.5
DCAR_018989 Daucus carota HOM05D005018 ORTHO05D006786 0.0e+00 1125.9 658 83.9
TPR.G37346 Trifolium pratense HOM05D005018 ORTHO05D006786 0.0e+00 1125.5 625 88.0
MD07G1060700 Malus domestica HOM05D005018 ORTHO05D006786 0.0e+00 1124.4 708 81.1
Ca_17625_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 0.0e+00 1124.0 671 83.5
Aqoxy6G00298 Aquilegia oxysepala HOM05D005018 ORTHO05D006786 0.0e+00 1122.5 712 79.1
FAN06G2729 Fragaria x ananassa HOM05D005018 ORTHO05D006786 0.0e+00 1122.1 741 78.3
HanXRQChr03g0092941 Helianthus annuus HOM05D005018 ORTHO05D006786 0.0e+00 1117.8 686 81.3
FAN03G0747 Fragaria x ananassa HOM05D005018 ORTHO05D006786 0.0e+00 1117.4 738 78.2
ECA240G3046 Erigeron canadensis HOM05D005018 ORTHO05D006786 0.0e+00 1116.3 706 79.6
EL10Ac4g09610 Beta vulgaris HOM05D005018 ORTHO05D006786 0.0e+00 1112.4 701 79.9
Rhsim12G0009100 Rhododendron simsii HOM05D005018 ORTHO05D006786 0.0e+00 1112.4 677 81.7
CARHR104850 Cardamine hirsuta HOM05D005018 ORTHO05D006786 0.0e+00 1110.5 635 85.0
AT2G13440 Arabidopsis thaliana HOM05D005018 ORTHO05D006786 0.0e+00 1105.5 637 84.9
MBI03_g13501_MAGBIO Magnolia biondii HOM05D005018 ORTHO05D006786 0.0e+00 1103.6 652 83.6
AL3G45320 Arabidopsis lyrata HOM05D005018 ORTHO05D006786 0.0e+00 1102.4 701 78.5
Carub.0003s2795 Capsella rubella HOM05D005018 ORTHO05D006786 0.0e+00 1102.4 637 85.1
Thhalv10022575m.g Eutrema salsugineum HOM05D005018 ORTHO05D006786 0.0e+00 1102.0 637 84.9
A03p44940 Brassica napus HOM05D005018 ORTHO05D006786 0.0e+00 1101.7 679 81.1
Sabra05G0054700 Salix brachista HOM05D005018 ORTHO05D006786 0.0e+00 1100.9 707 79.5
BcaB08g34530 Brassica carinata HOM05D005018 ORTHO05D006786 0.0e+00 1100.5 681 80.9
BcaC01g03124 Brassica carinata HOM05D005018 ORTHO05D006786 0.0e+00 1099.0 649 83.7
C03p55820 Brassica napus HOM05D005018 ORTHO05D006786 0.0e+00 1099.0 649 83.7
Lsat_1_v5_gn_3_126721 Lactuca sativa HOM05D005018 ORTHO05D006786 0.0e+00 1099.0 644 84.2
Sp3g26900 Schrenkiella parvula HOM05D005018 ORTHO05D006786 0.0e+00 1098.2 683 80.7
Os01g0960300 Oryza sativa ssp. japonica HOM05D005018 ORTHO05D006786 0.0e+00 1094.0 631 83.4
BraA03t13631Z Brassica rapa HOM05D005018 ORTHO05D006786 0.0e+00 1092.4 697 79.3
Hund28182 Selenicereus undatus HOM05D005018 ORTHO05D006786 0.0e+00 1090.1 767 73.1
Hund28185 Selenicereus undatus HOM05D005018 ORTHO05D006786 0.0e+00 1090.1 767 73.1
ATR0730G013 Amborella trichopoda HOM05D005018 ORTHO05D006786 0.0e+00 1089.3 628 83.9
HPP92_016130 Vanilla planifolia HOM05D005018 ORTHO05D006786 0.0e+00 1083.6 635 82.8
BolC3t17863H Brassica oleracea HOM05D005018 ORTHO05D006786 0.0e+00 1082.4 658 82.2
Aa31sc255G10 Aethionema arabicum HOM05D005018 ORTHO05D006786 0.0e+00 1081.6 655 82.0
Thecc.01G136300 Theobroma cacao HOM05D005018 ORTHO05D006786 0.0e+00 1081.2 693 78.9
SGA_v2.0_scaffold5G02934 Striga asiatica HOM05D005018 ORTHO05D006786 4.8e-312 1073.5 792 71.2
COL.COLO4_35799 Corchorus olitorius HOM05D005018 ORTHO05D006786 3.1e-309 1064.7 700 77.7
Psat7g044640 Pisum sativum HOM05D005018 ORTHO05D006786 9.0e-309 1063.1 700 78.0
vmacro23049 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 1.7e-307 1058.9 909 62.9
ClCG01G015110 Citrullus lanatus HOM05D005018 ORTHO05D006786 9.3e-306 1053.1 721 76.0
Phvul.002G274000 Phaseolus vulgaris HOM05D005018 ORTHO05D006786 3.7e-302 1041.2 629 82.4
FAN10G3591 Fragaria x ananassa HOM05D005018 ORTHO05D006786 5.0e-299 1030.8 736 73.5
Solyc01g068290.4 Solanum lycopersicum HOM05D005018 ORTHO05D006786 5.0e-299 1030.8 528 97.5
Mapoly0069s0053 Marchantia polymorpha HOM05D005018 ORTHO05D006786 3.9e-296 1021.1 686 73.9
FvH4_7g05150 Fragaria vesca HOM05D005018 ORTHO05D006786 7.4e-295 1016.9 668 78.4
GSVIVG01026449001 Vitis vinifera HOM05D005018 ORTHO05D006786 2.4e-293 1011.9 795 68.1
Pp3c16_24810 Physcomitrium patens HOM05D005018 ORTHO05D006786 1.3e-291 1006.1 639 76.2
CBR_g18682 Chara braunii HOM05D005018 ORTHO05D006786 3.2e-282 974.9 638 74.9
Sc09g0002290 Simmondsia chinensis HOM05D005018 ORTHO05D006786 4.2e-282 974.5 545 87.0
Nitab4.5_0006307g0020 Nicotiana tabacum HOM05D005018 ORTHO05D006786 1.7e-275 952.6 710 71.8
SMO139G0120 Selaginella moellendorffii HOM05D005018 ORTHO05D006786 1.8e-269 932.6 602 75.1
Prupe.5G002000 Prunus persica HOM05D005018 ORTHO05D006786 6.5e-267 924.1 551 85.1
Lj2A615G13 Lonicera japonica HOM05D005018 ORTHO05D006786 1.1e-266 923.3 508 89.0
unitig_0.g220 Utricularia gibba HOM05D005018 ORTHO05D006786 7.2e-266 920.6 630 73.5
Eucgr.I00131 Eucalyptus grandis HOM05D005018 ORTHO05D006786 3.6e-265 918.3 556 82.7
Cc02_g29440 Coffea canephora HOM05D005018 ORTHO05D006786 1.3e-262 909.8 505 87.9
Atru.chr4.947 Acer truncatum HOM05D005018 ORTHO05D006786 1.4e-261 906.4 559 82.1
Oeu006102.4 Olea europaea HOM05D005018 ORTHO05D006786 7.7e-260 900.6 507 85.4
Cre10.g428678 Chlamydomonas reinhardtii HOM05D005018 ORTHO05D006786 6.8e-256 887.5 647 67.5
Ah.06g190950 Amaranthus hybridus HOM05D005018 ORTHO05D006786 6.1e-249 864.4 595 75.1
Oeu026685.1 Olea europaea HOM05D005018 ORTHO05D006786 6.1e-249 864.4 580 75.2
MCO09G341 Micromonas commoda HOM05D005018 ORTHO05D006786 1.5e-247 859.8 679 64.1
Ciclev10003172m.g Citrus clementina HOM05D005018 ORTHO05D006786 8.6e-235 817.4 452 88.3
PRCOL_00006684 Prasinoderma coloniale HOM05D005018 ORTHO05D006786 2.5e-226 789.3 612 64.2
vmacro23145 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 3.5e-212 742.3 484 76.2
PGSC0003DMG400006748 Solanum tuberosum HOM05D005018 ORTHO05D006786 6.0e-196 688.3 352 96.9
AagrBONN_evm.TU.Sc2ySwM_344.2451 Anthoceros agrestis HOM05D005018 ORTHO05D006786 3.0e-195 686.0 418 79.4
MD07G1060500 Malus domestica HOM05D005018 ORTHO05D006786 5.8e-191 671.8 409 82.9
Zm00001eb140420 Zea mays HOM05D005018 ORTHO05D006786 8.5e-182 641.3 385 80.8
AUR62000506 Chenopodium quinoa HOM05D005018 ORTHO05D006786 1.4e-173 614.0 401 76.1
Cpa.g.sc42.187 Carica papaya HOM05D005018 ORTHO05D006786 1.3e-150 537.7 332 80.4
Eucgr.I00140 Eucalyptus grandis HOM05D005018 ORTHO05D006786 2.8e-140 503.4 447 61.3
Haze_26929 Corylus avellana HOM05D005018 ORTHO05D006786 2.3e-131 473.8 597 43.2
Cfa023424 Carpinus fangiana HOM05D005018 ORTHO05D006786 3.2e-128 463.4 671 39.2
BolC8t48115H Brassica oleracea HOM05D005018 ORTHO05D006786 5.6e-109 399.4 354 60.2
Haze_26659 Corylus avellana HOM05D005018 ORTHO05D006786 8.1e-108 395.6 483 44.9
Haze_25310 Corylus avellana HOM05D005018 ORTHO05D006786 1.1e-107 395.2 346 61.3
MCO09G386 Micromonas commoda HOM05D005018 ORTHO05D006786 4.0e-107 393.3 655 37.9
BcaC07g37734 Brassica carinata HOM05D005018 ORTHO05D006786 2.1e-95 354.4 314 59.9
Ciclev10002140m.g Citrus clementina HOM05D005018 ORTHO05D006786 3.6e-92 343.6 202 83.2
Cpa.g.sc1441.1 Carica papaya HOM05D005018 ORTHO05D006786 1.4e-80 305.1 169 89.9
Haze_25309 Corylus avellana HOM05D005018 ORTHO05D006786 2.7e-71 274.2 161 82.0
SEGI_07875 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 2.2e-57 228.0 196 58.2
SEGI_06865 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 4.2e-56 223.8 162 65.4
Cc02_g29450 Coffea canephora HOM05D005018 ORTHO05D006786 6.1e-55 219.9 202 66.3
Haze_25306 Corylus avellana HOM05D005018 ORTHO05D000965 3.3e-45 187.6 114 84.2
Oeu026684.1 Olea europaea HOM05D005018 ORTHO05D006786 5.7e-45 186.8 251 47.0
SMO139G0025 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 7.0e-43 179.9 263 42.6
Zm00001eb132400 Zea mays HOM05D005018 ORTHO05D006786 3.5e-42 177.6 105 80.0
Ca_28668_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 8.5e-41 172.9 182 48.4
SMO157G0012 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 2.3e-38 164.9 106 73.6
Zm00001eb292630 Zea mays HOM05D005018 ORTHO05D006786 1.4e-35 155.6 112 68.8
Lj2A615T20 Lonicera japonica HOM05D005018 ORTHO05D006786 1.0e-33 149.4 76 94.7
Zm00001eb074000 Zea mays HOM05D005018 ORTHO05D006786 1.7e-33 148.7 94 76.6
Zm00001eb319120 Zea mays HOM05D005018 ORTHO05D006786 2.9e-33 147.9 83 86.7
Haze_18314 Corylus avellana HOM05D005018 ORTHO05D006786 1.1e-32 146.0 139 57.6
Lsat_1_v5_gn_8_7740 Lactuca sativa HOM05D005018 ORTHO05D006786 4.7e-31 140.6 71 85.9
Cpa.g.sc1441.2 Carica papaya HOM05D005018 ORTHO05D006786 2.7e-26 124.8 71 83.1
CDE08G0903 Ceratophyllum demersum HOM05D005018 ORTHO05D006786 2.9e-25 121.3 72 79.2
Ah.06g190940 Amaranthus hybridus HOM05D005018 ORTHO05D006786 6.6e-25 120.2 70 80.0
Haze_18329 Corylus avellana HOM05D001982 ORTHO05D008035 2.3e-17 95.1 60 73.3
HanXRQChr09g0246051 Helianthus annuus HOM05D005018 ORTHO05D006171 1.6e-15 89.0 47 78.7
HanXRQChr10g0278491 Helianthus annuus HOM05D005018 ORTHO05D006786 4.0e-14 84.3 48 77.1
SEGI_26662 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 1.2e-13 82.8 42 92.9
C09p47090 Brassica napus HOM05D036241 ORTHO05D032846 3.7e-12 77.8 77 54.5


User provided reference genes

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