Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G400.8 Capsicum annuum HOM05D004619 ORTHO05D005738 0.0e+00 1351.7 674 100.0
Solyc08g066580.4 Solanum lycopersicum HOM05D004619 ORTHO05D005738 0.0e+00 1223.0 662 91.8
Sopen08g020420 Solanum pennellii HOM05D004619 ORTHO05D005738 0.0e+00 1221.8 662 91.7
Nitab4.5_0003794g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 0.0e+00 1175.6 656 88.6
Nitab4.5_0001515g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 0.0e+00 1171.8 657 88.7
Peaxi162Scf00227g00812 Petunia axillaris HOM05D004619 ORTHO05D005738 0.0e+00 1127.9 659 84.4
Lj8A581G22 Lonicera japonica HOM05D004619 ORTHO05D005738 3.4e-297 1024.6 659 75.7
CSS0048446 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 9.9e-297 1023.1 652 75.9
CSS0016966 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 2.9e-296 1021.5 652 75.6
Hma1.2p1_0049F.1_g028570 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 5.4e-295 1017.3 656 75.2
GSVIVG01035621001 Vitis vinifera HOM05D004619 ORTHO05D005738 2.6e-289 998.4 660 72.7
Prupe.1G448000 Prunus persica HOM05D004619 ORTHO05D005738 3.5e-286 988.0 662 72.2
Nn8g39783 Nelumbo nucifera HOM05D004619 ORTHO05D005738 6.6e-285 983.8 657 72.8
Cc08_g09590 Coffea canephora HOM05D004619 ORTHO05D005738 1.9e-284 982.2 663 72.5
FAN27G0819 Fragaria x ananassa HOM05D004619 ORTHO05D005738 3.1e-282 974.9 652 72.7
QL12p041325 Quercus lobata HOM05D004619 ORTHO05D005738 4.0e-282 974.5 663 72.2
FvH4_2g35520 Fragaria vesca HOM05D004619 ORTHO05D005738 1.5e-281 972.6 652 72.5
Atru.chr7.2086 Acer truncatum HOM05D004619 ORTHO05D005738 4.4e-281 971.1 657 70.9
Migut.E01528 Erythranthe guttata HOM05D004619 ORTHO05D005738 7.6e-281 970.3 647 72.6
MD15G1093200 Malus domestica HOM05D004619 ORTHO05D005738 1.3e-280 969.5 652 71.9
Duzib168G0872 Durio zibethinus HOM05D004619 ORTHO05D005738 4.9e-280 967.6 664 70.9
Gohir.D06G092300 Gossypium hirsutum HOM05D004619 ORTHO05D005738 9.3e-279 963.4 661 71.1
Gorai.010G106300 Gossypium raimondii HOM05D004619 ORTHO05D005738 6.0e-278 960.7 661 70.8
RcHm_v2.0_Chr6g0306261 Rosa chinensis HOM05D004619 ORTHO05D005738 1.0e-277 959.9 662 70.8
MSTRG.1660 Avicennia marina HOM05D004619 ORTHO05D005738 1.3e-277 959.5 650 72.0
Ciclev10007610m.g Citrus clementina HOM05D004619 ORTHO05D005738 1.3e-277 959.5 651 71.0
Thecc.09G045500 Theobroma cacao HOM05D004619 ORTHO05D005738 1.3e-277 959.5 652 71.8
Cfa013367 Carpinus fangiana HOM05D004619 ORTHO05D005738 6.6e-277 957.2 666 70.3
FAN20G0141 Fragaria x ananassa HOM05D004619 ORTHO05D005738 1.1e-276 956.4 664 70.9
Eucgr.C00596 Eucalyptus grandis HOM05D004619 ORTHO05D005738 1.9e-276 955.7 663 70.6
CANSAT25G1337 Cannabis sativa HOM05D004619 ORTHO05D005738 9.6e-276 953.4 662 70.5
MBI01_g18389_MAGBIO Magnolia biondii HOM05D004619 ORTHO05D005738 6.9e-274 947.2 662 69.0
COL.COLO4_20972 Corchorus olitorius HOM05D004619 ORTHO05D005738 2.0e-273 945.7 652 71.2
Lalb_Chr14g0362511 Lupinus albus HOM05D004619 ORTHO05D005738 2.6e-273 945.3 666 69.2
HanXRQChr13g0402061 Helianthus annuus HOM05D004619 ORTHO05D005738 5.8e-273 944.1 664 70.6
Lj1g0001172 Lotus japonicus HOM05D004619 ORTHO05D005738 1.7e-272 942.6 667 69.7
Lsat_1_v5_gn_6_23120 Lactuca sativa HOM05D004619 ORTHO05D005738 4.9e-272 941.0 654 70.6
Aqoxy7G03899 Aquilegia oxysepala HOM05D004619 ORTHO05D005738 1.1e-271 939.9 656 70.1
DCAR_004468 Daucus carota HOM05D004619 ORTHO05D005738 2.4e-271 938.7 659 71.2
ECA233G0099 Erigeron canadensis HOM05D004619 ORTHO05D005738 7.1e-271 937.2 657 69.6
Gohir.A06G092700 Gossypium hirsutum HOM05D004619 ORTHO05D005738 3.5e-270 934.9 661 69.7
SGA_v2.0_scaffold169G38654 Striga asiatica HOM05D004619 ORTHO05D005738 3.5e-270 934.9 650 69.7
TPR.G24498 Trifolium pratense HOM05D004619 ORTHO05D005738 3.5e-270 934.9 650 70.0
CiPaw.07G204000 Carya illinoinensis HOM05D004619 ORTHO05D005738 6.0e-270 934.1 631 71.9
SalBow1G6937 Salvia bowleyana HOM05D004619 ORTHO05D005738 1.3e-269 932.9 664 69.0
Glyma.17G193800 Glycine max HOM05D004619 ORTHO05D005738 1.9e-268 929.1 651 70.7
Medtr1g006690 Medicago truncatula HOM05D004619 ORTHO05D005738 2.5e-268 928.7 663 68.9
Ca_12754_v3 Cicer arietinum L. HOM05D004619 ORTHO05D005738 1.3e-267 926.4 663 68.9
arahy.Tifrunner.gnm1.ann1.CES4LM Arachis hypogaea HOM05D004619 ORTHO05D005738 2.0e-265 919.1 652 69.6
arahy.Tifrunner.gnm1.ann1.Z9IJD2 Arachis hypogaea HOM05D004619 ORTHO05D005738 2.2e-264 915.6 651 69.4
PSO210G6185 Papaver somniferum HOM05D004619 ORTHO05D005738 1.1e-263 913.3 652 68.1
PSO210G5473 Papaver somniferum HOM05D004619 ORTHO05D005738 1.4e-263 912.9 652 67.8
Rhsim07G0146900 Rhododendron simsii HOM05D004619 ORTHO05D005738 2.7e-262 908.7 637 70.5
EL10Ac2g04016 Beta vulgaris HOM05D004619 ORTHO05D005738 2.3e-261 905.6 667 67.0
Dinv27905 Davidia involucrata HOM05D004619 ORTHO05D005738 5.1e-261 904.4 541 81.1
THA.LOC104803757 Tarenaya hassleriana HOM05D004619 ORTHO05D005738 2.8e-259 898.7 654 67.0
TAR636G2525 Trochodendron aralioides HOM05D004619 ORTHO05D005738 2.8e-259 898.7 597 72.7
Sc23g0005210 Simmondsia chinensis HOM05D004619 ORTHO05D005738 3.7e-259 898.3 648 66.8
BcaC09g52091 Brassica carinata HOM05D004619 ORTHO05D005738 1.4e-258 896.3 675 64.6
C01p05790 Brassica napus HOM05D004619 ORTHO05D005738 6.9e-258 894.0 675 64.6
A01p05370 Brassica napus HOM05D004619 ORTHO05D005738 3.4e-257 891.7 661 65.5
Carub.0007s0758 Capsella rubella HOM05D004619 ORTHO05D005738 4.5e-257 891.3 652 66.3
Sabra18G0044200 Salix brachista HOM05D004619 ORTHO05D005738 5.8e-257 891.0 631 69.3
AT4G32910 Arabidopsis thaliana HOM05D004619 ORTHO05D005738 7.6e-257 890.6 652 65.8
AL7G18800 Arabidopsis lyrata HOM05D004619 ORTHO05D005738 1.3e-256 889.8 652 65.8
Sed0007447 Sechium edule HOM05D004619 ORTHO05D005738 2.9e-256 888.6 655 68.1
BraA01t00511Z Brassica rapa HOM05D004619 ORTHO05D005738 4.9e-256 887.9 661 65.1
Thhalv10024536m.g Eutrema salsugineum HOM05D004619 ORTHO05D005738 4.9e-256 887.9 652 66.0
CsaV3_2G030840 Cucumis sativus L. HOM05D004619 ORTHO05D005738 8.4e-256 887.1 652 67.2
BolC1t00559H Brassica oleracea HOM05D004619 ORTHO05D005738 1.1e-255 886.7 664 64.9
Sp7g30680 Schrenkiella parvula HOM05D004619 ORTHO05D005738 1.4e-255 886.3 652 65.8
Actinidia15739 Actinidia chinensis HOM05D004619 ORTHO05D005738 9.3e-255 883.6 607 72.2
CARHR240910 Cardamine hirsuta HOM05D004619 ORTHO05D005738 9.3e-255 883.6 657 65.4
Sabra18G0044100 Salix brachista HOM05D004619 ORTHO05D005738 2.1e-254 882.5 623 69.3
AUR62039705 Chenopodium quinoa HOM05D004619 ORTHO05D005738 2.5e-252 875.5 589 71.3
Manes.16G075300 Manihot esculenta HOM05D004619 ORTHO05D005738 3.3e-252 875.2 661 65.4
Aa31sc131G40 Aethionema arabicum HOM05D004619 ORTHO05D005738 1.5e-249 866.3 664 64.0
ClCG08G012210 Citrullus lanatus HOM05D004619 ORTHO05D005738 1.5e-249 866.3 651 66.1
PGR031G0242 Punica granatum HOM05D004619 ORTHO05D005738 5.5e-247 857.8 653 65.7
Haze_21890 Corylus avellana HOM05D004619 ORTHO05D005738 1.6e-246 856.3 664 65.7
ATR0705G091 Amborella trichopoda HOM05D004619 ORTHO05D005738 1.5e-244 849.7 675 61.8
CDE02G4285 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 2.5e-244 849.0 660 63.0
vmacro05371 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 2.4e-242 842.4 939 51.1
Phvul.001G074000 Phaseolus vulgaris HOM05D004619 ORTHO05D005738 1.4e-237 826.6 587 68.8
MELO3C011139.2 Cucumis melo HOM05D004619 ORTHO05D005738 2.3e-237 825.9 658 63.2
Os01g0746200 Oryza sativa ssp. japonica HOM05D004619 ORTHO05D005738 1.1e-236 823.5 670 60.4
Eucgr.C00551 Eucalyptus grandis HOM05D004619 ORTHO05D005738 1.3e-235 820.1 599 66.9
Ah.10g035010 Amaranthus hybridus HOM05D004619 ORTHO05D005738 2.8e-235 818.9 661 62.3
HPP92_005572 Vanilla planifolia HOM05D004619 ORTHO05D005738 4.1e-234 815.1 665 61.2
Zm00001eb152980 Zea mays HOM05D004619 ORTHO05D005738 9.1e-234 813.9 668 59.9
Hma1.2p1_0049F.1_g028580 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 1.9e-231 806.2 520 73.8
Psat6g038280 Pisum sativum HOM05D004619 ORTHO05D005738 4.7e-230 801.6 565 68.5
Hund19512 Selenicereus undatus HOM05D004619 ORTHO05D005738 2.5e-223 779.2 807 51.9
AUR62009276 Chenopodium quinoa HOM05D004619 ORTHO05D005738 9.1e-218 760.8 663 59.7
vmacro23276 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 3.7e-203 712.2 933 47.3
Potri.018G044300 Populus trichocarpa HOM05D004619 ORTHO05D005738 9.8e-196 687.6 453 73.7
SHI18685 Sapria himalayana HOM05D004619 ORTHO05D005738 1.1e-194 684.1 653 56.4
Oeu031693.1 Olea europaea HOM05D004619 ORTHO05D005738 2.9e-171 606.3 417 68.8
Pp3c16_3750 Physcomitrium patens HOM05D004619 ORTHO05D005738 2.7e-169 599.7 679 47.4
Mapoly0014s0066 Marchantia polymorpha HOM05D004619 ORTHO05D005738 3.4e-156 556.2 660 43.6
VMungo0647G0418 Vigna mungo HOM05D004619 ORTHO05D005738 8.1e-150 535.0 362 70.7
AagrBONN_evm.TU.Sc2ySwM_368.2349 Anthoceros agrestis HOM05D004619 ORTHO05D005738 5.5e-146 522.3 586 47.1
Actinidia14677 Actinidia chinensis HOM05D004619 ORTHO05D005738 7.4e-119 432.2 402 54.2
BcaC09g52090 Brassica carinata HOM05D004619 ORTHO05D005738 5.2e-112 409.5 334 59.6
Psat7g196840 Pisum sativum HOM05D004619 ORTHO05D005738 9.7e-103 378.6 285 63.2
SGA_v2.0_scaffold163G38073 Striga asiatica HOM05D004619 ORTHO05D005738 4.5e-100 369.8 254 72.4
Cpa.g.sc2198.1 Carica papaya HOM05D004619 ORTHO05D005738 2.2e-94 350.9 226 77.9
unitig_578.g16587 Utricularia gibba HOM05D004619 ORTHO05D005738 4.5e-84 316.6 291 58.4
Actinidia14676 Actinidia chinensis HOM05D004619 ORTHO05D005738 1.3e-67 261.9 167 80.2
VMungo0647G1361 Vigna mungo HOM05D004619 ORTHO05D005738 5.2e-64 250.0 203 61.6
Cpa.g.c44012 Carica papaya HOM05D004619 ORTHO05D005738 1.8e-56 224.9 149 65.1
unitig_578.g16586 Utricularia gibba HOM05D004619 ORTHO05D005738 8.9e-56 222.6 257 48.2
Lj5g0023577 Lotus japonicus HOM05D004619 ORTHO05D005738 3.8e-38 164.1 154 56.5
SMO146G0002 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 3.5e-36 157.5 224 42.9
SMO173G0047 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 3.9e-35 154.1 224 42.9
SMO173G0066 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 7.6e-31 139.8 224 37.5
SEGI_12145 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 2.9e-30 137.9 112 58.0
CBR_g55392 Chara braunii HOM05D000019 ORTHO05D000048 4.2e-29 134.0 169 39.1
FvH4_4g13810 Fragaria vesca HOM05D004619 ORTHO05D005738 1.0e-27 129.4 107 62.6
SMO173G0051 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 1.0e-27 129.4 154 44.2
arahy.Tifrunner.gnm1.ann1.7I309S Arachis hypogaea HOM05D004619 ORTHO05D005738 9.6e-26 122.9 119 55.5
arahy.Tifrunner.gnm1.ann1.VKWI5R Arachis hypogaea HOM05D004619 ORTHO05D005738 8.2e-25 119.8 86 66.3
SEGI_32974 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 1.1e-24 119.4 98 56.1
arahy.Tifrunner.gnm1.ann1.2KYU87 Arachis hypogaea HOM05D004619 ORTHO05D005738 3.1e-24 117.9 118 55.1
BolC6t36187H Brassica oleracea HOM05D004619 ORTHO05D005738 8.4e-22 109.8 109 50.5
FAN14G2999 Fragaria x ananassa HOM05D004619 ORTHO05D003203 7.1e-21 106.7 61 78.7
FvH4_6g10180 Fragaria vesca HOM05D004619 ORTHO05D003203 1.2e-20 105.9 66 74.2
arahy.Tifrunner.gnm1.ann1.EP17SZ Arachis hypogaea HOM05D004619 ORTHO05D005738 3.5e-20 104.4 104 57.7
BolC9t59437H Brassica oleracea HOM05D004619 ORTHO05D005738 1.8e-19 102.1 109 48.6
C09p66170 Brassica napus HOM05D004619 ORTHO05D005738 5.1e-19 100.5 109 47.7
Lsat_1_v5_gn_8_131800 Lactuca sativa HOM05D003157 ORTHO05D004447 8.7e-19 99.8 75 70.7
Cpa.g.sc78.1 Carica papaya HOM05D004619 ORTHO05D005738 5.7e-18 97.1 73 57.5
Dinv23369 Davidia involucrata HOM05D004619 ORTHO05D005738 5.7e-18 97.1 85 58.8
Lsat_1_v5_gn_4_165860 Lactuca sativa HOM05D004619 ORTHO05D005738 1.1e-16 92.8 76 60.5
QL08p060719 Quercus lobata HOM05D004619 ORTHO05D005738 1.2e-15 89.4 55 78.2
CBR_g55391 Chara braunii HOM05D000019 ORTHO05D000002 1.7e-14 85.5 115 42.6
Cre08.g383650 Chlamydomonas reinhardtii HOM05D004619 ORTHO05D005738 2.5e-13 81.6 488 20.5
CDE08G0324 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 4.2e-13 80.9 65 63.1
Dinv23370 Davidia involucrata HOM05D004619 ORTHO05D005738 4.2e-13 80.9 129 40.3
CBR_g55394 Chara braunii HOM05D004619 ORTHO05D005738 1.2e-12 79.3 166 31.3
Lsat_1_v5_gn_8_1401 Lactuca sativa HOM05D004619 ORTHO05D005738 2.1e-12 78.6 59 59.3
BcaC08g43687 Brassica carinata HOM05D004619 ORTHO05D005738 6.1e-12 77.0 57 61.4
Lsat_1_v5_gn_6_18560 Lactuca sativa HOM05D000118 ORTHO05D005738 7.9e-12 76.6 55 61.8
A06p44050 Brassica napus HOM05D004619 ORTHO05D005738 3.0e-11 74.7 57 59.6
BraA06t27279Z Brassica rapa HOM05D004619 ORTHO05D005738 3.0e-11 74.7 57 59.6
SEGI_14473 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 3.9e-11 74.3 63 57.1
BcaB03g16865 Brassica carinata HOM05D004619 ORTHO05D005738 2.5e-10 71.6 57 57.9
Glyma.14G146000 Glycine max HOM05D004619 ORTHO05D005738 1.7e-09 68.9 53 64.2
Nn8g39123 Nelumbo nucifera HOM05D005233 ORTHO05D006308 4.8e-09 67.4 48 68.8
Cpa.g.sc78.2 Carica papaya HOM05D004619 ORTHO05D005738 1.2e-07 62.8 65 52.3
arahy.Tifrunner.gnm1.ann1.6B1VGR Arachis hypogaea HOM05D004619 ORTHO05D005738 7.7e-07 60.1 104 42.3
CDE08G1138 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 6.5e-06 57.0 49 51.0


User provided reference genes

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