Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G4.9 Capsicum annuum HOM05D000882 ORTHO05D006555 0.0e+00 1395.6 748 100.0
PGSC0003DMG400020522 Solanum tuberosum HOM05D000882 ORTHO05D006555 4.0e-283 978.0 740 76.1
Nitab4.5_0001510g0050 Nicotiana tabacum HOM05D000882 ORTHO05D006555 6.0e-279 964.1 743 75.1
Nitab4.5_0000011g0370 Nicotiana tabacum HOM05D000882 ORTHO05D006555 2.2e-273 945.7 738 74.8
Sopen12g013920 Solanum pennellii HOM05D000882 ORTHO05D006555 2.3e-270 935.6 729 74.3
Peaxi162Scf00023g00925 Petunia axillaris HOM05D000882 ORTHO05D006555 3.0e-230 802.4 796 60.7
Solyc12g063050.3 Solanum lycopersicum HOM05D000882 ORTHO05D006555 6.8e-198 694.9 529 74.3
Dinv18817 Davidia involucrata HOM05D000882 ORTHO05D006555 8.1e-159 565.1 779 48.5
CSS0000697 Camellia sinensis var. sinensis HOM05D000882 ORTHO05D006555 2.4e-142 510.4 805 43.1
Cc11_g15170 Coffea canephora HOM05D000882 ORTHO05D006555 5.1e-137 492.7 752 43.4
Oeu019433.1 Olea europaea HOM05D000882 ORTHO05D006555 9.1e-134 481.9 833 41.1
Actinidia34003 Actinidia chinensis HOM05D000882 ORTHO05D006555 1.1e-126 458.4 771 43.3
vmacro16077 Vaccinium macrocarpon HOM05D000882 ORTHO05D006555 1.1e-123 448.4 797 40.5
MSTRG.13303 Avicennia marina HOM05D000882 ORTHO05D006555 7.2e-123 445.7 756 42.6
Migut.E00001 Erythranthe guttata HOM05D000882 ORTHO05D006555 1.2e-117 428.3 752 41.2
CiPaw.05G103000 Carya illinoinensis HOM05D000882 ORTHO05D006555 6.5e-116 422.5 784 39.9
QL03p049824 Quercus lobata HOM05D000882 ORTHO05D006555 1.5e-115 421.4 824 37.7
Haze_12484 Corylus avellana HOM05D000882 ORTHO05D006555 4.2e-115 419.9 785 39.4
DCAR_024627 Daucus carota HOM05D000882 ORTHO05D006555 3.6e-114 416.8 785 38.9
Cfa009433 Carpinus fangiana HOM05D000882 ORTHO05D006555 1.0e-113 415.2 780 39.1
Rhsim12G0098400 Rhododendron simsii HOM05D000882 ORTHO05D006555 1.1e-110 405.2 778 39.7
TAR629G2844 Trochodendron aralioides HOM05D000882 ORTHO05D006555 4.1e-110 403.3 798 39.1
Thecc.02G195000 Theobroma cacao HOM05D000882 ORTHO05D006555 1.7e-108 397.9 782 39.8
CiPaw.06G108300 Carya illinoinensis HOM05D000882 ORTHO05D006555 2.3e-108 397.5 772 37.4
TAR371G0751 Trochodendron aralioides HOM05D000882 ORTHO05D006555 3.8e-108 396.7 800 38.1
Gorai.012G125200 Gossypium raimondii HOM05D000882 ORTHO05D006555 1.4e-105 388.3 781 38.3
Nn4g22172 Nelumbo nucifera HOM05D000882 ORTHO05D006555 1.5e-104 384.8 803 36.5
Duzib132G0070 Durio zibethinus HOM05D000882 ORTHO05D006555 2.0e-104 384.4 782 38.2
Gohir.A04G101000 Gossypium hirsutum HOM05D000882 ORTHO05D006555 2.6e-104 384.0 783 38.2
Gohir.D04G140200 Gossypium hirsutum HOM05D000882 ORTHO05D006555 3.4e-104 383.6 781 38.2
Duzib052G0681 Durio zibethinus HOM05D000882 ORTHO05D006555 4.9e-103 379.8 783 38.2
COL.COLO4_05290 Corchorus olitorius HOM05D000882 ORTHO05D006555 3.8e-100 370.2 729 39.6
GSVIVG01004933001 Vitis vinifera HOM05D000882 ORTHO05D006555 6.6e-100 369.4 738 39.3
SGA_v2.0_scaffold85G26587 Striga asiatica HOM05D000882 ORTHO05D006555 4.3e-99 366.7 774 38.1
Cpa.g.sc2017.1 Carica papaya HOM05D000882 ORTHO05D006555 3.6e-98 363.6 728 37.0
Manes.09G186500 Manihot esculenta HOM05D000882 ORTHO05D006555 3.6e-98 363.6 790 36.5
Potri.003G164300 Populus trichocarpa HOM05D000882 ORTHO05D006555 8.9e-97 359.0 784 37.5
Ciclev10030535m.g Citrus clementina HOM05D000882 ORTHO05D006555 5.7e-96 356.3 766 38.8
Sabra03G0119500 Salix brachista HOM05D000882 ORTHO05D006555 5.4e-94 349.7 781 36.4
Sabra01G0045500 Salix brachista HOM05D000882 ORTHO05D006555 1.2e-93 348.6 771 36.7
Potri.001G065600 Populus trichocarpa HOM05D000882 ORTHO05D006555 2.0e-93 347.8 778 36.9
CANSAT01G2636 Cannabis sativa HOM05D000882 ORTHO05D006555 7.8e-93 345.9 784 37.4
Actinidia09600 Actinidia chinensis HOM05D000882 ORTHO05D006555 1.5e-91 341.7 625 41.0
MD13G1129000 Malus domestica HOM05D000882 ORTHO05D006555 1.9e-91 341.3 792 37.4
TWI75G1568 Tripterygium wilfordii HOM05D000882 ORTHO05D006555 9.5e-91 339.0 764 36.4
Ca_07088_v3 Cicer arietinum L. HOM05D000882 ORTHO05D006555 1.4e-89 335.1 759 37.0
CsaV3_6G007820 Cucumis sativus L. HOM05D000882 ORTHO05D006555 4.0e-89 333.6 792 35.2
PGR119G1660 Punica granatum HOM05D000882 ORTHO05D006555 1.5e-88 331.6 762 36.4
TAR622G1309 Trochodendron aralioides HOM05D000882 ORTHO05D006555 2.0e-88 331.3 786 35.5
ClCG06G001780 Citrullus lanatus HOM05D000882 ORTHO05D006555 5.8e-88 329.7 785 36.8
Eucgr.G01961 Eucalyptus grandis HOM05D000882 ORTHO05D006555 7.5e-88 329.3 784 34.2
HanXRQChr11g0330821 Helianthus annuus HOM05D000882 ORTHO05D006555 9.8e-88 328.9 720 39.9
HanXRQChr06g0175061 Helianthus annuus HOM05D000882 ORTHO05D006555 3.7e-87 327.0 719 39.9
Lsat_1_v5_gn_3_32040 Lactuca sativa HOM05D000882 ORTHO05D006555 1.1e-86 325.5 716 38.8
MELO3C022351.2 Cucumis melo HOM05D000882 ORTHO05D006555 1.4e-86 325.1 784 36.2
FAN12G2306 Fragaria x ananassa HOM05D000882 ORTHO05D006555 4.1e-86 323.6 769 37.2
FvH4_4g22870 Fragaria vesca HOM05D000882 ORTHO05D006555 2.0e-85 321.2 761 36.9
FAN17G1997 Fragaria x ananassa HOM05D000882 ORTHO05D006555 1.3e-84 318.5 770 36.8
MD16G1128700 Malus domestica HOM05D000882 ORTHO05D006555 3.0e-84 317.4 789 36.9
TWI36G0606 Tripterygium wilfordii HOM05D000882 ORTHO05D006555 3.0e-84 317.4 773 34.8
FAN07G0205 Fragaria x ananassa HOM05D000882 ORTHO05D006555 6.6e-84 316.2 764 37.2
Lalb_Chr04g0258101 Lupinus albus HOM05D000882 ORTHO05D006555 8.6e-84 315.8 793 34.7
Lalb_Chr04g0258091 Lupinus albus HOM05D000882 ORTHO05D006555 1.9e-83 314.7 786 36.1
EL10Ac6g13593 Beta vulgaris HOM05D000882 ORTHO05D006555 8.9e-81 305.8 704 36.9
Sc11g0000160 Simmondsia chinensis HOM05D000882 ORTHO05D006555 1.5e-80 305.1 768 35.8
Aqoxy3G01872 Aquilegia oxysepala HOM05D000882 ORTHO05D006555 1.4e-78 298.5 802 35.7
Lj1g0014200 Lotus japonicus HOM05D000882 ORTHO05D006555 4.1e-78 297.0 756 36.6
THA.LOC104812602 Tarenaya hassleriana HOM05D000882 ORTHO05D006555 1.6e-77 295.0 759 34.7
RcHm_v2.0_Chr4g0429111 Rosa chinensis HOM05D000882 ORTHO05D006555 1.0e-76 292.4 669 36.9
Sed0022347 Sechium edule HOM05D000882 ORTHO05D006555 3.0e-76 290.8 741 35.5
Hund06124 Selenicereus undatus HOM05D000882 ORTHO05D006555 6.6e-76 289.7 761 35.7
Ah.03g135630 Amaranthus hybridus HOM05D002085 ORTHO05D006555 1.5e-75 288.5 732 35.1
AL4G29210 Arabidopsis lyrata HOM05D000882 ORTHO05D006555 3.3e-75 287.3 769 35.0
Prupe.1G217600 Prunus persica HOM05D000882 ORTHO05D006555 3.3e-75 287.3 772 34.8
Sp4g15880 Schrenkiella parvula HOM05D000882 ORTHO05D006555 6.2e-74 283.1 710 35.9
Thhalv10016157m.g Eutrema salsugineum HOM05D000882 ORTHO05D006555 1.8e-73 281.6 716 34.9
Medtr7g021190 Medicago truncatula HOM05D000882 ORTHO05D006555 1.8e-73 281.6 764 34.3
MBI07_g40344_MAGBIO Magnolia biondii HOM05D000882 ORTHO05D006555 8.9e-73 279.3 816 34.2
unitig_21.g20887 Utricularia gibba HOM05D000882 ORTHO05D006555 7.6e-72 276.2 710 35.6
HanXRQChr17g0540461 Helianthus annuus HOM05D000882 ORTHO05D006555 9.9e-72 275.8 745 35.6
arahy.Tifrunner.gnm1.ann1.W5XP03 Arachis hypogaea HOM05D000882 ORTHO05D006555 1.7e-71 275.0 771 33.2
arahy.Tifrunner.gnm1.ann1.C8BV8A Arachis hypogaea HOM05D000882 ORTHO05D006555 3.8e-71 273.9 781 32.9
AUR62005701 Chenopodium quinoa HOM05D000882 ORTHO05D006555 1.1e-70 272.3 700 34.4
Carub.0004s1517 Capsella rubella HOM05D000882 ORTHO05D006555 9.2e-70 269.2 770 32.5
Phvul.008G019000 Phaseolus vulgaris HOM05D000882 ORTHO05D006555 1.2e-69 268.9 777 33.2
AUR62028854 Chenopodium quinoa HOM05D000882 ORTHO05D006555 7.8e-69 266.2 702 34.0
Glyma.08G257900 Glycine max HOM05D000882 ORTHO05D006555 6.6e-68 263.1 766 32.6
THA.LOC104820684 Tarenaya hassleriana HOM05D000882 ORTHO05D006555 1.9e-67 261.5 730 35.6
Glyma.18G282300 Glycine max HOM05D000882 ORTHO05D006555 4.3e-67 260.4 773 34.0
C04p15540 Brassica napus HOM05D000882 ORTHO05D006555 1.6e-66 258.5 733 33.8
CARHR127550 Cardamine hirsuta HOM05D000882 ORTHO05D006555 3.6e-66 257.3 714 34.2
VMungo1383G3079 Vigna mungo HOM05D000882 ORTHO05D006555 1.1e-65 255.8 803 32.4
BolC4t23125H Brassica oleracea HOM05D000882 ORTHO05D006555 3.1e-65 254.2 738 33.6
BcaB02g10571 Brassica carinata HOM05D000882 ORTHO05D006555 4.4e-64 250.4 564 36.7
TPR.G2920 Trifolium pratense HOM05D000882 ORTHO05D006555 1.3e-63 248.8 768 33.3
A05p12000 Brassica napus HOM05D000882 ORTHO05D006555 1.0e-60 239.2 694 33.1
BraA05t20142Z Brassica rapa HOM05D000882 ORTHO05D006555 5.1e-60 236.9 694 33.0
ECA246G3785 Erigeron canadensis HOM05D000882 ORTHO05D006555 4.9e-55 220.3 748 31.7
CDE06G2110 Ceratophyllum demersum HOM05D000058 ORTHO05D006555 7.1e-54 216.5 650 33.4
Sed0024818 Sechium edule HOM05D000882 ORTHO05D006555 1.4e-49 202.2 630 32.9
PSO017G3338 Papaver somniferum HOM05D000882 ORTHO05D006555 1.8e-49 201.8 779 29.5
Aa31LG9G13470 Aethionema arabicum HOM05D000882 ORTHO05D006555 3.1e-49 201.1 736 30.0
Medtr4g119070 Medicago truncatula HOM05D000882 ORTHO05D006555 5.3e-49 200.3 757 29.7
PSO478G0448 Papaver somniferum HOM05D000882 ORTHO05D006555 1.5e-48 198.7 776 29.6
AT2G33540 Arabidopsis thaliana HOM05D000882 ORTHO05D006555 1.6e-45 188.7 534 34.1
Os11g0521900 Oryza sativa ssp. japonica HOM05D000882 ORTHO05D006555 4.3e-43 180.6 779 29.0
Psat3g189480 Pisum sativum HOM05D000882 ORTHO05D006555 4.3e-43 180.6 412 35.0
HPP92_017906 Vanilla planifolia HOM05D000882 ORTHO05D006555 4.3e-43 180.6 743 30.1
CDE02G2227 Ceratophyllum demersum HOM05D000882 ORTHO05D006555 1.2e-37 162.5 648 29.2
PSO478G0828 Papaver somniferum HOM05D000882 ORTHO05D006555 7.9e-37 159.8 704 28.7
Zm00001eb170340 Zea mays HOM05D000882 ORTHO05D006555 5.1e-36 157.1 726 27.4
PSO017G1062 Papaver somniferum HOM05D000882 ORTHO05D006555 2.5e-27 128.3 657 27.2
SHI04131 Sapria himalayana HOM05D000882 ORTHO05D006555 4.3e-27 127.5 418 30.4
Psat3g189520 Pisum sativum HOM05D000882 ORTHO05D006555 2.2e-26 125.2 251 41.0
Atru.BG.293.p Acer truncatum HOM05D000882 ORTHO05D006555 2.5e-22 111.7 223 38.6
ATR0582G121 Amborella trichopoda HOM05D000882 ORTHO05D006555 1.7e-18 99.0 383 29.8
RcHm_v2.0_Chr4g0429121 Rosa chinensis HOM05D000882 ORTHO05D006555 6.3e-18 97.1 106 52.8
SHI04132 Sapria himalayana HOM05D000882 ORTHO05D006555 8.2e-18 96.7 260 33.8
HanXRQChr05g0154211 Helianthus annuus HOM05D000882 ORTHO05D006555 3.9e-12 77.8 91 49.5
SEGI_35751 Sequoiadendron giganteum HOM05D000882 ORTHO05D006555 5.3e-09 67.4 520 23.1
HanXRQChr10g0285651 Helianthus annuus HOM05D000882 ORTHO05D227231 2.2e-07 62.0 88 45.5


User provided reference genes

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