Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G386.33 Capsicum annuum HOM05D003925 ORTHO05D004832 9.4e-43 176.4 86 100.0
CAN.G798.55 Capsicum annuum HOM05D003925 ORTHO05D004832 4.8e-23 110.9 70 74.3
CAN.G697.8 Capsicum annuum HOM05D003925 ORTHO05D004832 1.1e-22 109.8 70 74.3
Solyc01g103680.3 Solanum lycopersicum HOM05D003925 ORTHO05D004832 2.4e-22 108.6 70 72.9
Sopen01g046090 Solanum pennellii HOM05D003925 ORTHO05D004832 2.4e-22 108.6 70 72.9
PGSC0003DMG400024923 Solanum tuberosum HOM05D003925 ORTHO05D004832 2.4e-22 108.6 70 72.9
Nitab4.5_0000948g0030 Nicotiana tabacum HOM05D003925 ORTHO05D004832 2.0e-21 105.5 70 67.1
Peaxi162Scf00011g00941 Petunia axillaris HOM05D003925 ORTHO05D004832 2.7e-21 105.1 70 68.6
Nitab4.5_0002596g0090 Nicotiana tabacum HOM05D003925 ORTHO05D004832 4.5e-21 104.4 70 65.7
CANSAT54G0877 Cannabis sativa HOM05D003925 ORTHO05D004832 1.0e-20 103.2 70 64.3
SGA_v2.0_scaffold42G15910 Striga asiatica HOM05D003925 ORTHO05D004832 2.9e-20 101.7 70 64.3
SGA_v2.0_scaffold8G04435 Striga asiatica HOM05D003925 ORTHO05D004832 1.5e-19 99.4 70 61.4
unitig_26.g9028 Utricularia gibba HOM05D003925 ORTHO05D005835 3.2e-19 98.2 70 60.0
Actinidia06473 Actinidia chinensis HOM05D003925 ORTHO05D004832 4.2e-19 97.8 70 60.0
Migut.N00826 Erythranthe guttata HOM05D003925 ORTHO05D004832 4.2e-19 97.8 70 60.0
Actinidia26166 Actinidia chinensis HOM05D003925 ORTHO05D004832 7.2e-19 97.1 70 58.6
CSS0030901 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 7.2e-19 97.1 70 58.6
Dinv07476 Davidia involucrata HOM05D003925 ORTHO05D005835 7.2e-19 97.1 70 58.6
BcaB01g02930 Brassica carinata HOM05D003925 ORTHO05D004832 1.6e-18 95.9 70 57.1
BcaC01g04841 Brassica carinata HOM05D003925 ORTHO05D004832 1.6e-18 95.9 70 57.1
BcaC01g04842 Brassica carinata HOM05D003925 ORTHO05D004832 1.6e-18 95.9 70 57.1
A03p27580 Brassica napus HOM05D003925 ORTHO05D004832 1.6e-18 95.9 70 58.6
C03p33290 Brassica napus HOM05D003925 ORTHO05D004832 1.6e-18 95.9 70 57.1
BolC3t15651H Brassica oleracea HOM05D003925 ORTHO05D004832 1.6e-18 95.9 70 57.1
Oeu023407.1 Olea europaea HOM05D003925 ORTHO05D004832 1.6e-18 95.9 70 61.4
Eucgr.I02754 Eucalyptus grandis HOM05D003925 ORTHO05D004832 2.1e-18 95.5 70 55.7
Eucgr.L02024 Eucalyptus grandis HOM05D003925 ORTHO05D004832 2.1e-18 95.5 70 55.7
THA.LOC104800040 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 2.1e-18 95.5 70 58.6
BraA03t11971Z Brassica rapa HOM05D003925 ORTHO05D004832 3.6e-18 94.7 70 57.1
Cpa.g.sc30.25 Carica papaya HOM05D003925 ORTHO05D004832 3.6e-18 94.7 70 57.1
Dinv19400 Davidia involucrata HOM05D003925 ORTHO05D004832 6.1e-18 94.0 70 55.7
Oeu000132.1 Olea europaea HOM05D003925 ORTHO05D004832 6.1e-18 94.0 70 58.6
Actinidia39010 Actinidia chinensis HOM05D003925 ORTHO05D004832 8.0e-18 93.6 70 60.0
AL8G23900 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 8.0e-18 93.6 70 55.7
Thhalv10013427m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 8.0e-18 93.6 70 54.3
Manes.07G023200 Manihot esculenta HOM05D003925 ORTHO05D004832 8.0e-18 93.6 71 57.7
SalBow3G3816 Salvia bowleyana HOM05D003925 ORTHO05D004832 8.0e-18 93.6 70 58.6
Sp6g11590 Schrenkiella parvula HOM05D003925 ORTHO05D004832 8.0e-18 93.6 70 54.3
Manes.10G119400 Manihot esculenta HOM05D003925 ORTHO05D004832 1.0e-17 93.2 71 57.7
MSTRG.5212 Avicennia marina HOM05D003925 ORTHO05D004832 1.4e-17 92.8 70 55.7
THA.LOC104799820 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 1.4e-17 92.8 70 57.1
AT5G49945 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 1.8e-17 92.4 70 54.3
Carub.0008s0983 Capsella rubella HOM05D003925 ORTHO05D004832 1.8e-17 92.4 70 52.9
QL02p100243 Quercus lobata HOM05D003925 ORTHO05D004832 1.8e-17 92.4 70 57.1
VMungo0540G0371 Vigna mungo HOM05D003925 ORTHO05D004832 1.8e-17 92.4 70 54.3
CSS0002231 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 3.0e-17 91.7 70 54.3
CSS0020156 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 3.0e-17 91.7 70 54.3
TPR.G2147 Trifolium pratense HOM05D003925 ORTHO05D004832 3.0e-17 91.7 70 52.9
Actinidia00183 Actinidia chinensis HOM05D003925 ORTHO05D004832 4.0e-17 91.3 70 57.1
CiPaw.06G173300 Carya illinoinensis HOM05D003925 ORTHO05D004832 4.0e-17 91.3 71 56.3
ClCG10G007000 Citrullus lanatus HOM05D003925 ORTHO05D004832 4.0e-17 91.3 70 52.9
DCAR_006681 Daucus carota HOM05D003925 ORTHO05D004832 4.0e-17 91.3 70 57.1
Lsat_1_v5_gn_7_76521 Lactuca sativa HOM05D003925 ORTHO05D004832 4.0e-17 91.3 71 57.7
Phvul.006G218500 Phaseolus vulgaris HOM05D003925 ORTHO05D004832 4.0e-17 91.3 70 52.9
Aa31LG3G6740 Aethionema arabicum HOM05D003925 ORTHO05D004832 5.2e-17 90.9 71 53.5
Aa31LG4G9470 Aethionema arabicum HOM05D003925 ORTHO05D004832 5.2e-17 90.9 69 56.5
CARHR258770 Cardamine hirsuta HOM05D003925 ORTHO05D004832 5.2e-17 90.9 70 54.3
Duzib132G1049 Durio zibethinus HOM05D003925 ORTHO05D004832 5.2e-17 90.9 70 55.7
Sabra01G0168900 Salix brachista HOM05D003925 ORTHO05D004832 5.2e-17 90.9 71 56.3
Lsat_1_v5_gn_9_121141 Lactuca sativa HOM05D003925 ORTHO05D004832 6.8e-17 90.5 70 54.3
vmacro19868 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 6.8e-17 90.5 70 54.3
HanXRQChr16g0509421 Helianthus annuus HOM05D003925 ORTHO05D004832 8.8e-17 90.1 70 55.7
Potri.004G223000 Populus trichocarpa HOM05D003925 ORTHO05D004832 8.8e-17 90.1 71 56.3
Eucgr.L02026 Eucalyptus grandis HOM05D003925 ORTHO05D004832 1.5e-16 89.4 70 51.4
Gohir.A01G182900 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.5e-16 89.4 70 54.3
Gohir.A04G132700 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.5e-16 89.4 70 54.3
Gohir.D01G174000 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.5e-16 89.4 70 54.3
Gohir.D04G176300 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.5e-16 89.4 70 54.3
Gorai.002G216100 Gossypium raimondii HOM05D003925 ORTHO05D004832 1.5e-16 89.4 70 54.3
TWI23G0121 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 1.5e-16 89.4 73 53.4
MSTRG.16495 Avicennia marina HOM05D003925 ORTHO05D004832 2.6e-16 88.6 70 55.7
Lj5C262G4 Lonicera japonica HOM05D003925 ORTHO05D005835 2.6e-16 88.6 70 55.7
Haze_10061 Corylus avellana HOM05D003925 ORTHO05D004832 3.4e-16 88.2 70 51.4
Aqoxy5G03033 Aquilegia oxysepala HOM05D003925 ORTHO05D004832 4.4e-16 87.8 71 56.3
A01p15700 Brassica napus HOM05D003925 ORTHO05D004832 4.4e-16 87.8 69 53.6
Carub.0007s1672 Capsella rubella HOM05D003925 ORTHO05D004832 4.4e-16 87.8 70 52.9
CiPaw.05G005700 Carya illinoinensis HOM05D003925 ORTHO05D004832 4.4e-16 87.8 71 53.5
COL.COLO4_17737 Corchorus olitorius HOM05D003925 ORTHO05D004832 4.4e-16 87.8 70 55.7
PGR142G2211 Punica granatum HOM05D003925 ORTHO05D004832 4.4e-16 87.8 70 51.4
arahy.Tifrunner.gnm1.ann1.D6FTCL Arachis hypogaea HOM05D003925 ORTHO05D004832 5.7e-16 87.4 70 54.3
Duzib052G0643 Durio zibethinus HOM05D003925 ORTHO05D004832 5.7e-16 87.4 70 54.3
Cfa004507 Carpinus fangiana HOM05D003925 ORTHO05D005835 7.5e-16 87.0 70 51.4
Nn1g08458 Nelumbo nucifera HOM05D003925 ORTHO05D004832 7.5e-16 87.0 70 48.6
Hma1.2p1_0884F.1_g232530 Hydrangea macrophylla HOM05D003925 ORTHO05D004832 9.8e-16 86.7 71 56.3
Lalb_Chr20g0123671 Lupinus albus HOM05D003925 ORTHO05D004832 9.8e-16 86.7 70 51.4
Hund15482 Selenicereus undatus HOM05D003925 ORTHO05D004832 9.8e-16 86.7 69 55.1
AL7G28890 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 1.3e-15 86.3 69 52.2
AT4G24330 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 1.3e-15 86.3 69 52.2
BraA01t01508Z Brassica rapa HOM05D003925 ORTHO05D004832 1.3e-15 86.3 69 52.2
arahy.Tifrunner.gnm1.ann1.0HG9JC Arachis hypogaea HOM05D003925 ORTHO05D004832 1.7e-15 85.9 70 52.9
BolC1t01894H Brassica oleracea HOM05D003925 ORTHO05D004832 1.7e-15 85.9 69 52.2
Gorai.012G167900 Gossypium raimondii HOM05D003925 ORTHO05D004832 1.7e-15 85.9 70 52.9
C01p19670 Brassica napus HOM05D003925 ORTHO05D004832 2.2e-15 85.5 69 52.2
Lj6g0026503 Lotus japonicus HOM05D003925 ORTHO05D004832 2.8e-15 85.1 70 48.6
Sed0019914 Sechium edule HOM05D003925 ORTHO05D004832 2.8e-15 85.1 70 51.4
Atru.chr6.781 Acer truncatum HOM05D003925 ORTHO05D004832 3.7e-15 84.7 71 53.5
Atru.chr6.812 Acer truncatum HOM05D003925 ORTHO05D004832 3.7e-15 84.7 71 53.5
Thhalv10024818m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 3.7e-15 84.7 69 50.7
Glyma.12G167500 Glycine max HOM05D003925 ORTHO05D004832 3.7e-15 84.7 74 48.6
Sp7g22330 Schrenkiella parvula HOM05D003925 ORTHO05D004832 3.7e-15 84.7 69 50.7
Thecc.02G024000 Theobroma cacao HOM05D003925 ORTHO05D004832 3.7e-15 84.7 70 51.4
CDE08G0951 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 4.8e-15 84.3 68 48.5
Medtr2g005930 Medicago truncatula HOM05D003925 ORTHO05D004832 4.8e-15 84.3 70 48.6
ECA240G1679 Erigeron canadensis HOM05D003925 ORTHO05D004832 6.3e-15 84.0 70 52.9
MBI09_g03430_MAGBIO Magnolia biondii HOM05D003925 ORTHO05D004832 6.3e-15 84.0 70 50.0
Prupe.1G577500 Prunus persica HOM05D003925 ORTHO05D004832 6.3e-15 84.0 70 47.1
PSO782G4904 Papaver somniferum HOM05D003925 ORTHO05D004832 8.3e-15 83.6 71 54.9
Psat1g223280 Pisum sativum HOM05D003925 ORTHO05D004832 8.3e-15 83.6 70 47.1
RcHm_v2.0_Chr7g0220701 Rosa chinensis HOM05D003925 ORTHO05D004832 8.3e-15 83.6 71 49.3
CARHR231760 Cardamine hirsuta HOM05D003925 ORTHO05D004832 1.1e-14 83.2 69 49.3
MD08G1240800 Malus domestica HOM05D003925 ORTHO05D004832 1.1e-14 83.2 70 47.1
PSO170G6240 Papaver somniferum HOM05D003925 ORTHO05D004832 1.1e-14 83.2 71 54.9
TWI14G0879 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 1.4e-14 82.8 73 47.9
C07p53570 Brassica napus HOM05D003925 ORTHO05D004832 1.8e-14 82.4 69 52.2
BolC7t45848H Brassica oleracea HOM05D003925 ORTHO05D004832 1.8e-14 82.4 69 52.2
Lj9C300G1 Lonicera japonica HOM05D003925 ORTHO05D004832 1.8e-14 82.4 70 51.4
Sc07g0004570 Simmondsia chinensis HOM05D003925 ORTHO05D004832 1.8e-14 82.4 70 51.4
Ah.03g136840 Amaranthus hybridus HOM05D003925 ORTHO05D004832 2.4e-14 82.0 69 53.6
BcaC06g32885 Brassica carinata HOM05D003925 ORTHO05D004832 2.4e-14 82.0 69 52.2
CDE06G0202 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 2.4e-14 82.0 69 47.8
Ciclev10000945m.g Citrus clementina HOM05D003925 ORTHO05D004832 2.4e-14 82.0 73 53.4
MELO3C016507.2 Cucumis melo HOM05D003925 ORTHO05D004832 2.4e-14 82.0 70 50.0
HanXRQChr06g0181341 Helianthus annuus HOM05D003925 ORTHO05D004832 2.4e-14 82.0 71 52.1
Ca_00045_v3 Cicer arietinum L. HOM05D003925 ORTHO05D004832 3.1e-14 81.6 68 48.5
Zm00001eb348650 Zea mays HOM05D003925 ORTHO05D004832 3.1e-14 81.6 71 56.3
ATR0584G077 Amborella trichopoda HOM05D003925 ORTHO05D004832 4.1e-14 81.3 69 49.3
EL10Ac6g14144 Beta vulgaris HOM05D003925 ORTHO05D004832 4.1e-14 81.3 69 53.6
CsaV3_3G006350 Cucumis sativus L. HOM05D003925 ORTHO05D004832 4.1e-14 81.3 70 50.0
A03p55280 Brassica napus HOM05D003925 ORTHO05D004832 5.4e-14 80.9 69 52.2
BraA03t14587Z Brassica rapa HOM05D003925 ORTHO05D004832 5.4e-14 80.9 69 52.2
MD15G1434000 Malus domestica HOM05D003925 ORTHO05D004832 5.4e-14 80.9 70 44.3
Zm00001eb289240 Zea mays HOM05D003925 ORTHO05D004832 5.4e-14 80.9 71 53.5
CARHR231750 Cardamine hirsuta HOM05D003925 ORTHO05D004832 7.0e-14 80.5 69 47.8
Glyma.16G003600 Glycine max HOM05D003925 ORTHO05D004832 7.0e-14 80.5 78 44.9
Nn5g27797 Nelumbo nucifera HOM05D003925 ORTHO05D004832 7.0e-14 80.5 69 47.8
AUR62041951 Chenopodium quinoa HOM05D003925 ORTHO05D004832 9.1e-14 80.1 69 53.6
HanXRQChr07g0187361 Helianthus annuus HOM05D003925 ORTHO05D004832 9.1e-14 80.1 71 49.3
Lalb_Chr15g0090731 Lupinus albus HOM05D003925 ORTHO05D004832 9.1e-14 80.1 72 47.2
TAR381G0375 Trochodendron aralioides HOM05D003925 ORTHO05D004832 9.1e-14 80.1 70 44.3
Os05g0432400 Oryza sativa ssp. japonica HOM05D003925 ORTHO05D004832 1.6e-13 79.3 71 52.1
AUR62040618 Chenopodium quinoa HOM05D003925 ORTHO05D004832 2.0e-13 79.0 69 52.2
BcaNung05636 Brassica carinata HOM05D003925 ORTHO05D004832 1.0e-12 76.6 69 49.3
SEGI_07809 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 1.0e-12 76.6 69 43.5
SEGI_11230 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 1.0e-12 76.6 69 43.5
ECA236G3450 Erigeron canadensis HOM05D003925 ORTHO05D004832 1.3e-12 76.3 65 53.8
FAN04G1563 Fragaria x ananassa HOM05D003925 ORTHO05D004832 1.9e-11 72.4 71 42.3
HPP92_013757 Vanilla planifolia HOM05D003925 ORTHO05D004832 3.3e-11 71.6 66 45.5
FvH4_5g28340 Fragaria vesca HOM05D003925 ORTHO05D004832 4.2e-11 71.2 71 42.3
CARHR216310 Cardamine hirsuta HOM05D003925 ORTHO05D004832 9.5e-11 70.1 70 45.7
FAN18G2864 Fragaria x ananassa HOM05D003925 ORTHO05D004832 1.2e-10 69.7 71 40.8
BcaC09g50878 Brassica carinata HOM05D003925 ORTHO05D004832 1.0e-09 66.6 69 44.9
Rhsim11G0124300 Rhododendron simsii HOM05D003925 ORTHO05D004832 3.0e-09 65.1 72 40.3
SHI34757 Sapria himalayana HOM05D003925 ORTHO05D004832 4.0e-09 64.7 70 44.3
Pp3c5_6620 Physcomitrium patens HOM05D003925 ORTHO05D004832 4.4e-08 61.2 70 34.3
SMO356G0110 Selaginella moellendorffii HOM05D003925 ORTHO05D004832 4.4e-08 61.2 69 36.2
vmacro01723 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 7.5e-08 60.5 71 39.4
CAN.G963.3 Capsicum annuum HOM05D003925 ORTHO05D004832 2.8e-07 58.5 33 78.8
CBR_g4722 Chara braunii HOM05D003925 ORTHO05D004832 1.4e-06 56.2 67 37.3
Mapoly0037s0012 Marchantia polymorpha HOM05D003925 ORTHO05D004832 9.2e-06 53.5 70 34.3


User provided reference genes

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