Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G376.10 Capsicum annuum HOM05D004873 ORTHO05D006122 0.0e+00 1418.3 868 100.0
Sopen05g001620 Solanum pennellii HOM05D004873 ORTHO05D006122 0.0e+00 1103.6 828 86.8
PGSC0003DMG400030977 Solanum tuberosum HOM05D004873 ORTHO05D006122 0.0e+00 1099.3 828 87.0
Peaxi162Scf00338g00218 Petunia axillaris HOM05D004873 ORTHO05D006122 9.2e-271 937.2 856 74.3
Nitab4.5_0000113g0270 Nicotiana tabacum HOM05D004873 ORTHO05D006122 3.6e-235 818.9 836 64.1
Dinv24864 Davidia involucrata HOM05D004873 ORTHO05D006122 5.5e-191 672.2 791 61.2
Oeu055452.2 Olea europaea HOM05D004873 ORTHO05D006122 4.4e-188 662.5 887 54.1
CSS0025142 Camellia sinensis var. sinensis HOM05D004873 ORTHO05D006122 1.5e-185 654.1 883 60.4
Cc11_g14610 Coffea canephora HOM05D004873 ORTHO05D006122 5.5e-183 645.6 832 61.8
Nn4g22808 Nelumbo nucifera HOM05D004873 ORTHO05D006122 1.5e-180 637.5 845 57.4
Atru.chr11.2013 Acer truncatum HOM05D004873 ORTHO05D006122 1.1e-178 631.3 852 58.2
Migut.L01408 Erythranthe guttata HOM05D004873 ORTHO05D006122 4.1e-178 629.4 827 59.7
SGA_v2.0_scaffold165G38251 Striga asiatica HOM05D004873 ORTHO05D006122 1.0e-176 624.8 893 55.0
GSVIVG01020233001 Vitis vinifera HOM05D004873 ORTHO05D006122 1.6e-174 617.5 826 57.9
Duzib251G0436 Durio zibethinus HOM05D004873 ORTHO05D006122 3.6e-174 616.3 843 54.8
TAR622G0484 Trochodendron aralioides HOM05D004873 ORTHO05D006122 6.1e-174 615.5 852 58.8
Ciclev10030647m.g Citrus clementina HOM05D004873 ORTHO05D006122 3.7e-171 606.3 840 57.9
Haze_12170 Corylus avellana HOM05D004873 ORTHO05D006122 3.7e-171 606.3 789 61.0
Duzib248G0479 Durio zibethinus HOM05D004873 ORTHO05D006122 1.8e-170 604.0 807 55.9
Hma1.2p1_0160F.1_g070740 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 3.1e-170 603.2 806 55.7
MSTRG.7893 Avicennia marina HOM05D004873 ORTHO05D006122 5.9e-169 599.0 754 60.1
CiPaw.05G150500 Carya illinoinensis HOM05D004873 ORTHO05D006122 5.0e-168 595.9 846 57.1
DCAR_026543 Daucus carota HOM05D004873 ORTHO05D006122 3.2e-167 593.2 853 57.1
TAR374G0217 Trochodendron aralioides HOM05D004873 ORTHO05D006122 4.2e-167 592.8 841 57.1
Dinv15307 Davidia involucrata HOM05D004873 ORTHO05D006122 5.5e-167 592.4 772 61.7
Actinidia01706 Actinidia chinensis HOM05D004873 ORTHO05D006122 1.6e-166 590.9 832 56.7
DCAR_024143 Daucus carota HOM05D004873 ORTHO05D006122 3.0e-165 586.6 816 58.0
COL.COLO4_36971 Corchorus olitorius HOM05D004873 ORTHO05D006122 7.5e-164 582.0 834 49.2
Cfa009139 Carpinus fangiana HOM05D004873 ORTHO05D006122 5.4e-162 575.9 880 56.1
MBI15_g36943_MAGBIO Magnolia biondii HOM05D004873 ORTHO05D006122 1.6e-161 574.3 862 57.4
Manes.13G031000 Manihot esculenta HOM05D004873 ORTHO05D006122 1.6e-161 574.3 775 59.9
TWI18G0605 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 1.7e-160 570.9 838 55.6
vmacro01183 Vaccinium macrocarpon HOM05D004873 ORTHO05D006122 6.5e-160 568.9 861 56.9
Eucgr.B03347 Eucalyptus grandis HOM05D004873 ORTHO05D006122 7.2e-159 565.5 847 56.4
RcHm_v2.0_Chr4g0443951 Rosa chinensis HOM05D004873 ORTHO05D006122 2.8e-158 563.5 879 53.1
Potri.008G147100 Populus trichocarpa HOM05D004873 ORTHO05D006122 6.3e-155 552.4 789 55.1
MELO3C012001.2 Cucumis melo HOM05D004873 ORTHO05D006122 1.1e-154 551.6 875 54.9
TWI75G0297 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 1.1e-154 551.6 840 55.8
QL03p061438 Quercus lobata HOM05D004873 ORTHO05D006122 1.3e-152 544.7 782 55.5
ECA199G0004 Erigeron canadensis HOM05D004873 ORTHO05D006122 5.0e-152 542.7 827 56.5
Lsat_1_v5_gn_4_6981 Lactuca sativa HOM05D004873 ORTHO05D006122 1.9e-151 540.8 846 57.2
Lj6A805G39 Lonicera japonica HOM05D004873 ORTHO05D006122 2.5e-151 540.4 911 50.9
FAN22G1569 Fragaria x ananassa HOM05D004873 ORTHO05D006122 3.3e-151 540.0 851 52.9
ClCG05G025280 Citrullus lanatus HOM05D004873 ORTHO05D006122 5.6e-151 539.3 786 58.3
Hma1.2p1_0867F.1_g230230 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 3.0e-149 533.5 823 51.4
Aqoxy3G02990_Aqoxy3G02991 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 5.2e-149 532.7 833 55.1
Rhsim12G0047400 Rhododendron simsii HOM05D004873 ORTHO05D006122 5.2e-149 532.7 893 54.6
CANSAT01G1467 Cannabis sativa HOM05D004873 ORTHO05D006122 6.8e-149 532.3 848 54.2
TWI36G0907 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 6.8e-149 532.3 850 54.9
Sabra10G0067000 Salix brachista HOM05D004873 ORTHO05D006122 7.5e-148 528.9 795 56.9
Ca_04600_v3 Cicer arietinum L. HOM05D004873 ORTHO05D006122 1.6e-145 521.2 830 52.2
Prupe.1G254700 Prunus persica HOM05D004873 ORTHO05D006122 1.6e-145 521.2 772 58.0
Gorai.005G183000 Gossypium raimondii HOM05D004873 ORTHO05D006122 3.5e-145 520.0 788 52.5
Gohir.D02G163000 Gossypium hirsutum HOM05D004873 ORTHO05D006122 4.6e-145 519.6 789 52.7
FvH4_4g34571 Fragaria vesca HOM05D004873 ORTHO05D006122 6.0e-145 519.2 875 51.4
HPP92_019184 Vanilla planifolia HOM05D004873 ORTHO05D006122 6.0e-145 519.2 809 52.2
FAN12G3868 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.1e-143 515.0 847 51.8
HanXRQChr12g0383471 Helianthus annuus HOM05D004873 ORTHO05D006122 1.1e-143 515.0 839 56.6
FAN07G2437 Fragaria x ananassa HOM05D004873 ORTHO05D006122 7.3e-143 512.3 775 54.3
Potri.010G094700 Populus trichocarpa HOM05D004873 ORTHO05D006122 7.3e-143 512.3 858 55.4
Sed0006362 Sechium edule HOM05D004873 ORTHO05D006122 1.6e-142 511.1 783 53.4
MD13G1091200 Malus domestica HOM05D004873 ORTHO05D006122 4.7e-142 509.6 774 54.5
arahy.Tifrunner.gnm1.ann1.SJZ9IC Arachis hypogaea HOM05D004873 ORTHO05D006122 6.2e-142 509.2 896 51.3
CsaV3_5G031610 Cucumis sativus L. HOM05D004873 ORTHO05D006122 6.2e-142 509.2 743 58.0
TPR.G13590 Trifolium pratense HOM05D004873 ORTHO05D006122 1.1e-141 508.4 850 52.8
AUR62005371 Chenopodium quinoa HOM05D004873 ORTHO05D006122 6.8e-141 505.8 819 47.9
Glyma.01G031400 Glycine max HOM05D004873 ORTHO05D006122 1.5e-140 504.6 804 55.7
Lalb_Chr16g0392411 Lupinus albus HOM05D004873 ORTHO05D006122 1.5e-140 504.6 776 55.3
FAN17G2310 Fragaria x ananassa HOM05D004873 ORTHO05D006122 2.0e-140 504.2 842 51.3
unitig_27.g25195 Utricularia gibba HOM05D004873 ORTHO05D006122 3.4e-140 503.4 857 53.2
arahy.Tifrunner.gnm1.ann1.QGK7DH Arachis hypogaea HOM05D004873 ORTHO05D006122 1.3e-139 501.5 919 50.2
Medtr5g034430 Medicago truncatula HOM05D004873 ORTHO05D006122 1.9e-138 497.7 849 51.5
MD16G1091700 Malus domestica HOM05D004873 ORTHO05D006122 6.0e-137 492.7 770 53.8
Sc11g0001220 Simmondsia chinensis HOM05D004873 ORTHO05D006122 2.5e-135 487.3 751 54.1
ATR0691G293 Amborella trichopoda HOM05D004873 ORTHO05D006122 1.6e-134 484.6 838 51.4
Phvul.002G071900 Phaseolus vulgaris HOM05D004873 ORTHO05D006122 3.6e-134 483.4 787 55.1
Gohir.A03G140300 Gossypium hirsutum HOM05D004873 ORTHO05D006122 4.7e-134 483.0 771 51.9
PGR102G2017 Punica granatum HOM05D004873 ORTHO05D006122 4.7e-134 483.0 848 52.7
VMungo1215G2983 Vigna mungo HOM05D004873 ORTHO05D006122 1.5e-132 478.0 834 53.1
Psat2g106600 Pisum sativum HOM05D004873 ORTHO05D006122 4.4e-132 476.5 782 52.7
Cpa.g.sc69.19 Carica papaya HOM05D004873 ORTHO05D006122 5.8e-132 476.1 873 45.0
PSO063G1237 Papaver somniferum HOM05D004873 ORTHO05D006122 5.8e-132 476.1 838 53.6
Thecc.02G248000 Theobroma cacao HOM05D004873 ORTHO05D006122 7.5e-132 475.7 718 53.9
Lalb_Chr05g0228131 Lupinus albus HOM05D004873 ORTHO05D006122 1.9e-130 471.1 778 54.6
Solyc05g005620.4 Solanum lycopersicum HOM05D004873 ORTHO05D006122 4.1e-130 469.9 309 84.8
Glyma.02G034300 Glycine max HOM05D004873 ORTHO05D006122 1.6e-129 468.0 774 54.3
HPP92_019185 Vanilla planifolia HOM05D004873 ORTHO05D006122 6.2e-126 456.1 807 49.3
Aa31LG2G10110 Aethionema arabicum HOM05D004873 ORTHO05D006122 1.8e-125 454.5 837 51.3
EL10Ac6g13668 Beta vulgaris HOM05D004873 ORTHO05D006122 3.4e-124 450.3 774 53.5
Carub.0002s0504 Capsella rubella HOM05D004873 ORTHO05D006122 3.4e-124 450.3 848 48.6
Nitab4.5_0010954g0010 Nicotiana tabacum HOM05D004873 ORTHO05D006122 6.4e-123 446.0 268 87.3
CARHR052750 Cardamine hirsuta HOM05D004873 ORTHO05D006122 1.1e-122 445.3 789 48.8
AUR62014033 Chenopodium quinoa HOM05D004873 ORTHO05D006122 1.2e-121 441.8 817 46.4
Lj2g0008447 Lotus japonicus HOM05D004873 ORTHO05D006122 2.1e-121 441.0 795 51.7
BolC1t03651H Brassica oleracea HOM05D004873 ORTHO05D006122 6.0e-121 439.5 847 47.5
BraA01t02979Z Brassica rapa HOM05D004873 ORTHO05D006122 1.0e-120 438.7 848 47.6
C01p36930 Brassica napus HOM05D004873 ORTHO05D006122 1.7e-120 438.0 847 46.2
AL2G16455 Arabidopsis lyrata HOM05D004873 ORTHO05D006122 3.9e-120 436.8 831 48.6
BcaC06g31808 Brassica carinata HOM05D004873 ORTHO05D006122 3.9e-120 436.8 844 48.0
PSO832G2005 Papaver somniferum HOM05D004873 ORTHO05D006122 3.9e-120 436.8 846 49.4
A01p29150 Brassica napus HOM05D004873 ORTHO05D006122 6.6e-120 436.0 848 47.4
Lalb_Chr05g0216921 Lupinus albus HOM05D004873 ORTHO05D006122 4.3e-119 433.3 748 44.8
BcaC09g49418 Brassica carinata HOM05D004873 ORTHO05D006122 6.2e-118 429.5 846 47.4
C04p26690 Brassica napus HOM05D004873 ORTHO05D006122 2.4e-117 427.6 813 47.6
BolC4t24137H Brassica oleracea HOM05D004873 ORTHO05D006122 2.4e-117 427.6 813 47.6
TAR629G1177 Trochodendron aralioides HOM05D004873 ORTHO05D006122 4.4e-116 423.3 807 44.7
BcaC02g10690 Brassica carinata HOM05D004873 ORTHO05D006122 2.9e-115 420.6 844 46.2
Sp2g04470 Schrenkiella parvula HOM05D004873 ORTHO05D006122 1.9e-114 417.9 838 48.7
THA.LOC104819547 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 5.4e-114 416.4 854 46.5
THA.LOC104819514 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 9.3e-114 415.6 835 47.9
BcaB04g20256 Brassica carinata HOM05D004873 ORTHO05D006122 1.6e-113 414.8 845 47.2
Hund05991 Selenicereus undatus HOM05D004873 ORTHO05D006122 7.8e-113 412.5 843 49.6
Thhalv10023242m.g Eutrema salsugineum HOM05D004873 ORTHO05D006122 8.7e-112 409.1 838 48.3
AT1G60200 Arabidopsis thaliana HOM05D004873 ORTHO05D006122 4.5e-108 396.7 773 48.1
Oeu056734.1 Olea europaea HOM05D004873 ORTHO05D006122 3.8e-107 393.7 840 45.8
SEGI_30430 Sequoiadendron giganteum HOM05D004873 ORTHO05D006122 1.6e-105 388.3 823 44.7
Zm00001eb042420 Zea mays HOM05D004873 ORTHO05D006122 7.4e-103 379.4 789 47.5
Ah.03g132650 Amaranthus hybridus HOM05D004873 ORTHO05D006122 4.3e-95 353.6 827 45.5
Actinidia08168 Actinidia chinensis HOM05D004873 ORTHO05D006122 4.2e-90 337.0 609 52.2
Zm00001eb179020 Zea mays HOM05D004873 ORTHO05D006122 2.1e-89 334.7 705 49.2
Pp3c25_3310 Physcomitrium patens HOM05D004873 ORTHO05D006122 2.0e-84 318.2 900 41.8
Mapoly0148s0032 Marchantia polymorpha HOM05D004873 ORTHO05D006122 8.5e-83 312.8 837 45.2
Pp3c16_19090 Physcomitrium patens HOM05D004873 ORTHO05D006122 2.5e-79 301.2 874 39.0
C05p51270 Brassica napus HOM05D004873 ORTHO05D006122 5.5e-66 256.9 571 46.4
FvH4_4g34570 Fragaria vesca HOM05D004873 ORTHO05D006122 7.4e-63 246.5 289 52.6
FAN12G0889 Fragaria x ananassa HOM05D004873 ORTHO05D006122 7.7e-60 236.5 273 52.7
PSO675G2898 Papaver somniferum HOM05D004873 ORTHO05D006122 2.5e-58 231.5 286 49.0
Os08g0416400 Oryza sativa ssp. japonica HOM05D004873 ORTHO05D006122 4.2e-58 230.7 371 46.1
CDE01G0488 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 5.2e-56 223.8 240 55.0
CDE01G0278 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 4.1e-53 214.2 364 47.3
CDE02G2726 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 1.7e-51 208.8 245 53.5
SMO117G0118 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 8.8e-48 196.4 838 34.5
CDE02G2297 Ceratophyllum demersum HOM05D001801 ORTHO05D001739 4.8e-46 190.7 181 61.9
CBR_g45271 Chara braunii HOM05D000019 ORTHO05D000002 1.7e-38 165.6 262 45.0
SHI27198 Sapria himalayana HOM05D004873 ORTHO05D006122 5.6e-34 150.6 132 58.3
Aqoxy1G03520 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 3.6e-25 121.3 70 85.7
MCO16G428 Micromonas commoda HOM05D004873 ORTHO05D006122 1.4e-21 109.4 139 43.9
Medtr5g034435 Medicago truncatula HOM05D004873 ORTHO05D006122 5.4e-21 107.5 65 83.1
Actinidia27784 Actinidia chinensis HOM05D004873 ORTHO05D026408 1.1e-18 99.8 72 72.2
Cre08.g375084 Chlamydomonas reinhardtii HOM05D004873 ORTHO05D006122 5.6e-18 97.4 183 41.5
Lsat_1_v5_gn_5_2020 Lactuca sativa HOM05D004873 ORTHO05D026408 7.3e-18 97.1 133 48.1
Lsat_1_v5_gn_6_33360 Lactuca sativa HOM05D004873 ORTHO05D026408 2.6e-15 88.6 189 37.6
SMO119G0006 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 3.5e-12 78.2 135 40.7
PSO339G1217 Papaver somniferum HOM05D004873 ORTHO05D006122 1.6e-09 69.3 96 38.5
PSO017G6017 Papaver somniferum HOM05D004873 ORTHO05D006122 3.1e-08 65.1 137 32.1
FAN22G0459 Fragaria x ananassa HOM05D004873 ORTHO05D006122 7.6e-07 60.5 84 45.2


User provided reference genes

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