Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G370.29 Capsicum annuum HOM05D005801 ORTHO05D008555 1.2e-275 952.6 481 100.0
Nitab4.5_0001703g0010 Nicotiana tabacum HOM05D005801 ORTHO05D008555 6.5e-202 707.6 526 75.1
Sopen05g014540 Solanum pennellii HOM05D005801 ORTHO05D008555 2.7e-200 702.2 438 84.9
PGSC0003DMG400038162 Solanum tuberosum HOM05D005801 ORTHO05D008555 1.8e-199 699.5 438 84.9
Nitab4.5_0000066g0110 Nicotiana tabacum HOM05D005801 ORTHO05D008555 2.3e-199 699.1 523 74.8
Solyc05g017990.4 Solanum lycopersicum HOM05D005801 ORTHO05D008555 6.3e-197 691.0 485 77.7
Peaxi162Scf00720g00044 Petunia axillaris HOM05D005801 ORTHO05D008555 1.6e-184 649.8 444 77.9
Cc06_g10480 Coffea canephora HOM05D005801 ORTHO05D008555 1.5e-166 590.1 435 69.4
CSS0008146 Camellia sinensis var. sinensis HOM05D005801 ORTHO05D008555 5.6e-161 571.6 411 74.0
Dinv36686 Davidia involucrata HOM05D005801 ORTHO05D008555 1.2e-160 570.5 520 64.0
TAR636G1320 Trochodendron aralioides HOM05D005801 ORTHO05D008555 1.8e-159 566.6 447 68.2
Thecc.09G100600 Theobroma cacao HOM05D005801 ORTHO05D008555 1.2e-155 553.9 553 59.3
Duzib150G1339 Durio zibethinus HOM05D005801 ORTHO05D008555 4.6e-155 552.0 554 57.9
Oeu053186.1 Olea europaea HOM05D005801 ORTHO05D008555 1.3e-154 550.4 398 72.4
MSTRG.10602 Avicennia marina HOM05D005801 ORTHO05D008555 4.3e-153 545.4 415 70.6
Rhsim03G0236600 Rhododendron simsii HOM05D005801 ORTHO05D008555 9.6e-153 544.3 415 70.4
Gorai.001G010100 Gossypium raimondii HOM05D005801 ORTHO05D008555 1.6e-152 543.5 472 64.2
vmacro06253 Vaccinium macrocarpon HOM05D005801 ORTHO05D008555 1.6e-152 543.5 416 68.8
Gohir.D07G009800 Gossypium hirsutum HOM05D005801 ORTHO05D008555 4.8e-152 542.0 452 65.9
Lj4P387T11 Lonicera japonica HOM05D005801 ORTHO05D008555 1.4e-151 540.4 410 70.7
Prupe.7G219800 Prunus persica HOM05D005801 ORTHO05D008555 2.4e-151 539.7 589 54.2
Gohir.A07G009500 Gossypium hirsutum HOM05D005801 ORTHO05D008555 9.0e-151 537.7 473 63.8
Duzib132G0722 Durio zibethinus HOM05D005801 ORTHO05D008555 1.3e-149 533.9 453 64.9
SalBow1G2797 Salvia bowleyana HOM05D005801 ORTHO05D008555 1.9e-148 530.0 433 68.4
TWI63G0976 Tripterygium wilfordii HOM05D005801 ORTHO05D008555 1.6e-147 526.9 463 62.0
Migut.K00541 Erythranthe guttata HOM05D005801 ORTHO05D008555 2.1e-147 526.6 503 59.6
EL10Ac8g18377 Beta vulgaris HOM05D005801 ORTHO05D008555 1.0e-146 524.2 512 58.4
Manes.16G108700 Manihot esculenta HOM05D005801 ORTHO05D008555 1.7e-146 523.5 367 73.0
QL02p041581 Quercus lobata HOM05D005801 ORTHO05D008555 2.3e-146 523.1 478 60.3
CANSAT21G1751 Cannabis sativa HOM05D005801 ORTHO05D008555 8.7e-146 521.2 386 69.9
COL.COLO4_34743 Corchorus olitorius HOM05D005801 ORTHO05D008555 2.5e-145 519.6 355 74.9
Cfa003179 Carpinus fangiana HOM05D005801 ORTHO05D008555 5.6e-145 518.5 350 75.1
Lalb_Chr05g0223241 Lupinus albus HOM05D005801 ORTHO05D008555 5.6e-145 518.5 459 62.3
arahy.Tifrunner.gnm1.ann1.BF4XTR Arachis hypogaea HOM05D005801 ORTHO05D008555 1.3e-144 517.3 454 62.6
Potri.018G087800 Populus trichocarpa HOM05D005801 ORTHO05D008555 1.6e-144 516.9 349 76.8
Aqoxy7G01401 Aquilegia oxysepala HOM05D005801 ORTHO05D008555 8.1e-144 514.6 343 75.8
MD02G1065700 Malus domestica HOM05D005801 ORTHO05D008555 4.0e-143 512.3 386 68.1
VMungo0251G1949 Vigna mungo HOM05D005801 ORTHO05D008555 5.3e-143 511.9 473 59.8
CiPaw.04G157900 Carya illinoinensis HOM05D005801 ORTHO05D008555 6.9e-143 511.5 350 74.3
DCAR_028663 Daucus carota HOM05D005801 ORTHO05D008555 1.5e-142 510.4 466 60.5
Glyma.08G033500 Glycine max HOM05D005801 ORTHO05D008555 1.5e-142 510.4 472 60.8
Sabra18G0076100 Salix brachista HOM05D005801 ORTHO05D008555 2.0e-142 510.0 364 73.4
FvH4_1g06150 Fragaria vesca HOM05D005801 ORTHO05D008555 2.6e-142 509.6 347 74.1
Psat7g016720 Pisum sativum HOM05D005801 ORTHO05D008555 2.6e-142 509.6 347 74.9
Ca_17365_v3 Cicer arietinum L. HOM05D005801 ORTHO05D008555 3.4e-142 509.2 463 61.3
CsaV3_1G039790 Cucumis sativus L. HOM05D005801 ORTHO05D008555 3.4e-142 509.2 432 62.0
FAN23G0343 Fragaria x ananassa HOM05D005801 ORTHO05D008555 3.4e-142 509.2 347 74.1
FAN19G1715 Fragaria x ananassa HOM05D005801 ORTHO05D008555 5.8e-142 508.4 347 73.8
RcHm_v2.0_Chr2g0091911 Rosa chinensis HOM05D005801 ORTHO05D008555 5.8e-142 508.4 571 53.4
MELO3C015412.2 Cucumis melo HOM05D005801 ORTHO05D008555 7.6e-142 508.1 391 66.2
Sc18g0001500 Simmondsia chinensis HOM05D005801 ORTHO05D008555 9.9e-142 507.7 452 61.7
Phvul.002G308600 Phaseolus vulgaris HOM05D005801 ORTHO05D008555 1.3e-141 507.3 528 56.1
Lj4g0016627 Lotus japonicus HOM05D005801 ORTHO05D008555 3.8e-141 505.8 347 75.2
FAN28G2516 Fragaria x ananassa HOM05D005801 ORTHO05D008555 1.4e-140 503.8 347 73.2
THA.LOC104814572 Tarenaya hassleriana HOM05D005801 ORTHO05D008555 1.4e-140 503.8 468 59.6
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 1.9e-140 503.4 553 55.7
Eucgr.C00997 Eucalyptus grandis HOM05D005801 ORTHO05D008555 1.2e-139 500.7 444 61.0
CARHR110310 Cardamine hirsuta HOM05D005801 ORTHO05D008555 1.6e-139 500.4 414 64.0
FAN26G1273 Fragaria x ananassa HOM05D005801 ORTHO05D008555 2.7e-139 499.6 347 72.6
Thhalv10002296m.g Eutrema salsugineum HOM05D005801 ORTHO05D008555 4.6e-139 498.8 432 62.5
AL3G48350 Arabidopsis lyrata HOM05D005801 ORTHO05D008555 3.0e-138 496.1 412 64.6
unitig_46.g18397 Utricularia gibba HOM05D005801 ORTHO05D008555 3.0e-138 496.1 410 63.4
FAN19G0317 Fragaria x ananassa HOM05D005801 ORTHO05D008555 8.7e-138 494.6 336 72.9
AT2G19870 Arabidopsis thaliana HOM05D005801 ORTHO05D008555 1.5e-137 493.8 412 64.3
Carub.0003s3414 Capsella rubella HOM05D005801 ORTHO05D008555 2.5e-137 493.0 412 63.6
Medtr8g102480 Medicago truncatula HOM05D005801 ORTHO05D008555 4.3e-137 492.3 355 73.0
Sp3g33210 Schrenkiella parvula HOM05D005801 ORTHO05D008555 9.6e-137 491.1 433 61.0
FAN26G1315 Fragaria x ananassa HOM05D005801 ORTHO05D008555 3.7e-136 489.2 347 72.0
BcaB03g16775 Brassica carinata HOM05D005801 ORTHO05D008555 6.2e-136 488.4 389 65.6
BcaC06g36648 Brassica carinata HOM05D005801 ORTHO05D008555 6.2e-136 488.4 390 65.6
BolC7t40588H Brassica oleracea HOM05D005801 ORTHO05D008555 6.2e-136 488.4 390 65.6
C07p01810 Brassica napus HOM05D005801 ORTHO05D008555 4.0e-135 485.7 390 65.4
Ciclev10007826m.g Citrus clementina HOM05D005801 ORTHO05D008555 5.3e-135 485.3 445 60.9
MBI04_g34406_MAGBIO Magnolia biondii HOM05D005801 ORTHO05D008555 2.6e-134 483.0 392 66.1
Sed0027809 Sechium edule HOM05D005801 ORTHO05D008555 5.8e-134 481.9 408 64.0
SGA_v2.0_scaffold129G34141 Striga asiatica HOM05D005801 ORTHO05D008555 1.3e-133 480.7 497 55.9
BraA07t27882Z Brassica rapa HOM05D005801 ORTHO05D008555 4.2e-132 475.7 375 66.9
A07p00840 Brassica napus HOM05D005801 ORTHO05D008555 9.3e-132 474.6 454 59.3
PSO063G7511 Papaver somniferum HOM05D005801 ORTHO05D008555 2.7e-131 473.0 310 77.4
PSO832G4312 Papaver somniferum HOM05D005801 ORTHO05D008555 6.7e-130 468.4 304 78.3
ECA234G2262 Erigeron canadensis HOM05D005801 ORTHO05D008555 4.5e-126 455.7 520 51.3
Lsat_1_v5_gn_5_144900 Lactuca sativa HOM05D005801 ORTHO05D008555 5.8e-126 455.3 500 54.4
CDE04G1187 Ceratophyllum demersum HOM05D005801 ORTHO05D008555 5.0e-125 452.2 418 58.9
Actinidia32650 Actinidia chinensis HOM05D005801 ORTHO05D008555 6.5e-125 451.8 317 73.2
AUR62021403 Chenopodium quinoa HOM05D005801 ORTHO05D008555 3.2e-124 449.5 545 50.8
AUR62010892 Chenopodium quinoa HOM05D005801 ORTHO05D008555 3.9e-122 442.6 545 50.6
Aa31LG8G16820 Aethionema arabicum HOM05D005801 ORTHO05D008555 2.5e-121 439.9 357 63.6
ATR0681G166 Amborella trichopoda HOM05D005801 ORTHO05D008555 3.3e-121 439.5 349 63.9
HPP92_009088 Vanilla planifolia HOM05D005801 ORTHO05D008555 3.3e-121 439.5 487 52.6
Zm00001eb371210 Zea mays HOM05D005801 ORTHO05D008555 4.8e-120 435.6 461 53.1
SHI02689 Sapria himalayana HOM05D005801 ORTHO05D008555 1.2e-115 421.0 428 54.4
Cpa.g.sc40.94 Carica papaya HOM05D005801 ORTHO05D008555 3.0e-114 416.4 284 74.6
HanXRQChr10g0318931 Helianthus annuus HOM05D005801 ORTHO05D008555 5.1e-114 415.6 285 76.1
HanXRQChr10g0318941 Helianthus annuus HOM05D005801 ORTHO05D008555 8.8e-114 414.8 284 76.1
HanXRQChr14g0438761 Helianthus annuus HOM05D005801 ORTHO05D008555 8.8e-114 414.8 284 76.1
MD15G1196600 Malus domestica HOM05D005801 ORTHO05D008555 5.1e-106 389.0 260 76.5
CBR_g20364 Chara braunii HOM05D005801 ORTHO05D008555 1.8e-74 284.3 289 51.6
Mapoly0135s0034 Marchantia polymorpha HOM05D005801 ORTHO05D008555 2.6e-73 280.4 437 42.8
CAN.G640.23 Capsicum annuum HOM05D005801 ORTHO05D008555 7.5e-73 278.9 207 72.0
Pp3c17_17180 Physcomitrium patens HOM05D005801 ORTHO05D008555 7.5e-73 278.9 308 51.0
FvH4_1g06190 Fragaria vesca HOM05D005801 ORTHO05D008555 3.7e-72 276.6 176 79.0
CAN.G775.15 Capsicum annuum HOM05D005801 ORTHO05D008555 7.3e-68 262.3 286 54.9
Lalb_Chr09g0331541 Lupinus albus HOM05D005801 ORTHO05D008555 3.6e-67 260.0 213 69.5
SMO367G0373 Selaginella moellendorffii HOM05D005801 ORTHO05D008555 1.1e-60 238.4 277 50.2
Lj6C67T4 Lonicera japonica HOM05D005801 ORTHO05D008555 8.1e-59 232.3 187 66.3
Os01g0742000 Oryza sativa ssp. japonica HOM05D005801 ORTHO05D008555 8.6e-53 212.2 150 74.0
Cre13.g566150 Chlamydomonas reinhardtii HOM05D005801 ORTHO05D008555 4.4e-49 199.9 299 39.8
CAN.G1277.2 Capsicum annuum HOM05D005801 ORTHO05D008555 9.9e-49 198.7 284 48.2
CDE02G3237 Ceratophyllum demersum HOM05D005801 ORTHO05D008555 3.2e-47 193.7 342 37.7
PRCOL_00003145 Prasinoderma coloniale HOM05D005801 ORTHO05D008555 3.2e-47 193.7 284 41.9
MCO03G539 Micromonas commoda HOM05D005801 ORTHO05D008555 6.0e-46 189.5 329 38.3
HanXRQChr12g0378121 Helianthus annuus HOM05D005801 ORTHO05D008555 6.2e-35 152.9 143 53.8
CAN.G77.3 Capsicum annuum HOM05D005801 ORTHO05D008555 9.3e-31 139.0 83 84.3
Lalb_Chr09g0331551 Lupinus albus HOM05D005801 ORTHO05D008555 2.5e-28 131.0 196 42.9
EL10Ac8g19871 Beta vulgaris HOM05D005801 ORTHO05D008555 1.9e-20 104.8 77 70.1
BcaC04g20246 Brassica carinata HOM05D005801 ORTHO05D016715 2.5e-15 87.8 83 49.4
BolC9t57462H Brassica oleracea HOM05D005801 ORTHO05D016715 2.5e-15 87.8 83 49.4
C09p45950 Brassica napus HOM05D005801 ORTHO05D016715 4.2e-15 87.0 83 48.2
A07p26140 Brassica napus HOM05D005801 ORTHO05D013666 1.6e-14 85.1 74 55.4
BcaC03g16316 Brassica carinata HOM05D005801 ORTHO05D016715 6.0e-14 83.2 69 53.6
BraA07t30260Z Brassica rapa HOM05D005801 ORTHO05D013666 7.9e-14 82.8 74 54.1
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 3.9e-13 80.5 237 30.4
C03p54440 Brassica napus HOM05D005801 ORTHO05D041341 1.5e-12 78.6 56 62.5
BolC3t17730H Brassica oleracea HOM05D005801 ORTHO05D041341 1.5e-12 78.6 56 62.5
BcaB08g34890 Brassica carinata HOM05D005801 ORTHO05D008555 2.4e-10 71.2 77 54.5
BcaC04g22492 Brassica carinata HOM05D005801 ORTHO05D016715 9.0e-10 69.3 65 52.3
MD01G1041100 Malus domestica HOM05D007191 ORTHO05D009370 6.5e-08 63.2 177 34.5
Prupe.6G204900 Prunus persica HOM05D007191 ORTHO05D009370 5.5e-07 60.1 177 33.9
GSVIVG01003951001 Vitis vinifera HOM05D007191 ORTHO05D003232 1.2e-06 58.9 177 31.6
MBI16_g30311_MAGBIO Magnolia biondii HOM05D007191 ORTHO05D009370 3.5e-06 57.4 179 31.8
Thecc.01G088100 Theobroma cacao HOM05D007191 ORTHO05D009370 3.5e-06 57.4 180 31.7
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 4.6e-06 57.0 201 22.4
Dinv36956 Davidia involucrata HOM05D007191 ORTHO05D009370 6.1e-06 56.6 179 32.4
Nitab4.5_0000402g0060 Nicotiana tabacum HOM05D007191 ORTHO05D009370 7.9e-06 56.2 215 30.7


User provided reference genes

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