Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G364.2 Capsicum annuum HOM05D001816 ORTHO05D012714 8.5e-81 303.5 143 100.0
CAN.G2.9 Capsicum annuum HOM05D001816 ORTHO05D115796 6.0e-26 121.3 114 59.6
Cpa.g.sc20.161 Carica papaya HOM05D001816 ORTHO05D002001 3.0e-17 92.4 190 34.2
CAN.G1041.47 Capsicum annuum HOM05D001816 ORTHO05D003233 1.2e-15 87.0 47 87.2
CAN.G1041.49 Capsicum annuum HOM05D001816 ORTHO05D003233 8.1e-15 84.3 47 85.1
CAN.G1235.26 Capsicum annuum HOM05D001816 ORTHO05D002001 4.0e-14 82.0 46 82.6
Nitab4.5_0002486g0050 Nicotiana tabacum HOM05D001816 ORTHO05D002001 8.9e-14 80.9 46 80.4
Nitab4.5_0003603g0030 Nicotiana tabacum HOM05D001816 ORTHO05D002001 8.9e-14 80.9 46 80.4
Peaxi162Scf00362g00360 Petunia axillaris HOM05D001816 ORTHO05D002001 8.9e-14 80.9 46 80.4
ClCG02G010990 Citrullus lanatus HOM05D001816 ORTHO05D002001 1.5e-13 80.1 53 67.9
Sabra09G0109800 Salix brachista HOM05D001816 ORTHO05D002001 1.5e-13 80.1 45 80.0
FAN20G1974 Fragaria x ananassa HOM05D001816 ORTHO05D002001 2.6e-13 79.3 45 80.0
Atru.chr5.3488 Acer truncatum HOM05D001816 ORTHO05D002001 3.4e-13 79.0 45 77.8
CSS0006826 Camellia sinensis var. sinensis HOM05D001816 ORTHO05D002001 3.4e-13 79.0 45 77.8
CAN.G8.48 Capsicum annuum HOM05D001816 ORTHO05D115362 3.4e-13 79.0 46 82.6
Ciclev10030103m.g Citrus clementina HOM05D001816 ORTHO05D002001 3.4e-13 79.0 45 77.8
FvH4_2g16070 Fragaria vesca HOM05D001816 ORTHO05D002001 3.4e-13 79.0 45 77.8
FAN15G3397 Fragaria x ananassa HOM05D001816 ORTHO05D002001 3.4e-13 79.0 45 77.8
FAN24G0316 Fragaria x ananassa HOM05D001816 ORTHO05D002001 3.4e-13 79.0 45 77.8
FAN27G0881 Fragaria x ananassa HOM05D001816 ORTHO05D002001 3.4e-13 79.0 45 77.8
Lj1g0012910 Lotus japonicus HOM05D001816 ORTHO05D002001 3.4e-13 79.0 45 77.8
Medtr3g118360 Medicago truncatula HOM05D001816 ORTHO05D002001 3.4e-13 79.0 45 77.8
Psat5g000880 Pisum sativum HOM05D001816 ORTHO05D002001 3.4e-13 79.0 45 77.8
Rhsim05G0050000 Rhododendron simsii HOM05D001816 ORTHO05D002001 3.4e-13 79.0 45 77.8
RcHm_v2.0_Chr6g0279751 Rosa chinensis HOM05D001816 ORTHO05D002001 3.4e-13 79.0 45 77.8
Solyc01g111990.3 Solanum lycopersicum HOM05D001816 ORTHO05D002001 3.4e-13 79.0 46 80.4
Sopen01g054040 Solanum pennellii HOM05D001816 ORTHO05D002001 3.4e-13 79.0 46 80.4
TPR.G38581 Trifolium pratense HOM05D001816 ORTHO05D002001 3.4e-13 79.0 45 77.8
TAR628G0285 Trochodendron aralioides HOM05D001816 ORTHO05D002001 3.4e-13 79.0 45 80.0
AUR62012953 Chenopodium quinoa HOM05D001816 ORTHO05D002001 4.4e-13 78.6 45 75.6
CsaV3_6G012710 Cucumis sativus L. HOM05D001816 ORTHO05D002001 4.4e-13 78.6 45 75.6
Eucgr.I01492 Eucalyptus grandis HOM05D001816 ORTHO05D002001 4.4e-13 78.6 45 77.8
CANSAT25G0387 Cannabis sativa HOM05D001816 ORTHO05D002001 5.8e-13 78.2 45 75.6
AUR62009961 Chenopodium quinoa HOM05D001816 ORTHO05D002001 5.8e-13 78.2 45 75.6
Ca_15279_v3 Cicer arietinum L. HOM05D001816 ORTHO05D002001 5.8e-13 78.2 45 77.8
Manes.04G068300 Manihot esculenta HOM05D001816 ORTHO05D002001 5.8e-13 78.2 45 77.8
Aqoxy6G01808 Aquilegia oxysepala HOM05D001816 ORTHO05D002001 7.5e-13 77.8 46 73.9
Oeu051849.1 Olea europaea HOM05D001816 ORTHO05D002001 7.5e-13 77.8 45 77.8
Prupe.8G174300 Prunus persica HOM05D001816 ORTHO05D002001 7.5e-13 77.8 45 75.6
MELO3C013645.2 Cucumis melo HOM05D001816 ORTHO05D002001 9.9e-13 77.4 45 75.6
Lj9C403T6 Lonicera japonica HOM05D001816 ORTHO05D002001 9.9e-13 77.4 45 75.6
Potri.009G141300 Populus trichocarpa HOM05D001816 ORTHO05D002001 9.9e-13 77.4 45 77.8
TWI31G0479 Tripterygium wilfordii HOM05D001816 ORTHO05D002001 9.9e-13 77.4 45 75.6
Actinidia20551 Actinidia chinensis HOM05D001816 ORTHO05D002001 1.7e-12 76.6 45 75.6
Glyma.04G001600 Glycine max HOM05D001816 ORTHO05D002001 1.7e-12 76.6 45 75.6
Glyma.06G001100 Glycine max HOM05D001816 ORTHO05D002001 1.7e-12 76.6 45 75.6
Lalb_Chr08g0246781 Lupinus albus HOM05D001816 ORTHO05D002001 1.7e-12 76.6 45 75.6
MD10G1133000 Malus domestica HOM05D001816 ORTHO05D002001 1.7e-12 76.6 45 75.6
Sc12g0007070 Simmondsia chinensis HOM05D001816 ORTHO05D002001 1.7e-12 76.6 45 75.6
vmacro17274 Vaccinium macrocarpon HOM05D001816 ORTHO05D002001 1.7e-12 76.6 46 73.9
VMungo1309G1075 Vigna mungo HOM05D001816 ORTHO05D002001 1.7e-12 76.6 45 75.6
EL10Ac9g21289 Beta vulgaris HOM05D001816 ORTHO05D002001 2.2e-12 76.3 45 73.3
Cfa005345 Carpinus fangiana HOM05D001816 ORTHO05D002001 2.2e-12 76.3 45 73.3
Haze_02022 Corylus avellana HOM05D001816 ORTHO05D002001 2.2e-12 76.3 45 73.3
Dinv41898 Davidia involucrata HOM05D001816 ORTHO05D002001 2.2e-12 76.3 45 75.6
Phvul.009G116900 Phaseolus vulgaris HOM05D001816 ORTHO05D002001 2.2e-12 76.3 45 75.6
Sed0019949 Sechium edule HOM05D001816 ORTHO05D002001 2.2e-12 76.3 45 75.6
Hund20638 Selenicereus undatus HOM05D001816 ORTHO05D002001 2.2e-12 76.3 46 73.9
CAN.G1552.1 Capsicum annuum HOM05D012522 ORTHO05D012714 2.9e-12 75.9 62 58.1
AUR62030935 Chenopodium quinoa HOM05D001816 ORTHO05D002001 2.9e-12 75.9 45 73.3
Cc09_g10520 Coffea canephora HOM05D001816 ORTHO05D002001 2.9e-12 75.9 45 73.3
THA.LOC104807386 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 2.9e-12 75.9 45 75.6
Aa31LG2G15270 Aethionema arabicum HOM05D001816 ORTHO05D002001 3.7e-12 75.5 43 76.7
ATR0712G016 Amborella trichopoda HOM05D001816 ORTHO05D002001 3.7e-12 75.5 45 73.3
arahy.Tifrunner.gnm1.ann1.1BU1FJ Arachis hypogaea HOM05D001816 ORTHO05D002001 3.7e-12 75.5 44 75.0
arahy.Tifrunner.gnm1.ann1.X97WXI Arachis hypogaea HOM05D001816 ORTHO05D002001 3.7e-12 75.5 44 75.0
CAN.G1690.8 Capsicum annuum HOM05D000840 ORTHO05D012714 4.9e-12 75.1 65 53.8
DCAR_022835 Daucus carota HOM05D001816 ORTHO05D002001 6.4e-12 74.7 45 73.3
QL11p055386 Quercus lobata HOM05D001816 ORTHO05D002001 6.4e-12 74.7 45 73.3
QL11p055697 Quercus lobata HOM05D001816 ORTHO05D002001 6.4e-12 74.7 45 73.3
GSVIVG01023918001 Vitis vinifera HOM05D001816 ORTHO05D002001 6.4e-12 74.7 46 69.6
BcaC03g13917 Brassica carinata HOM05D001816 ORTHO05D002001 8.3e-12 74.3 45 73.3
BNapus_Darmor_BZH_scaffold_38p00390 Brassica napus HOM05D001816 ORTHO05D002001 8.3e-12 74.3 45 73.3
C02p11280 Brassica napus HOM05D001816 ORTHO05D002001 8.3e-12 74.3 45 73.3
BolC2t07196H Brassica oleracea HOM05D001816 ORTHO05D002001 8.3e-12 74.3 45 73.3
BraA02t05688Z Brassica rapa HOM05D001816 ORTHO05D002001 8.3e-12 74.3 45 73.3
CiPaw.05G091200 Carya illinoinensis HOM05D001816 ORTHO05D002001 8.3e-12 74.3 43 74.4
ECA233G4820 Erigeron canadensis HOM05D001816 ORTHO05D002001 8.3e-12 74.3 45 73.3
HanXRQChr17g0559451 Helianthus annuus HOM05D001816 ORTHO05D002001 8.3e-12 74.3 45 73.3
Lsat_1_v5_gn_8_121800 Lactuca sativa HOM05D001816 ORTHO05D002001 8.3e-12 74.3 45 73.3
MD05G1130000 Malus domestica HOM05D001816 ORTHO05D002001 8.3e-12 74.3 43 76.7
Sp6g22620 Schrenkiella parvula HOM05D001816 ORTHO05D002001 8.3e-12 74.3 45 73.3
Thhalv10012575m.g Eutrema salsugineum HOM05D001816 ORTHO05D002001 1.1e-11 73.9 45 73.3
Nn6g31779 Nelumbo nucifera HOM05D001816 ORTHO05D002001 1.1e-11 73.9 45 73.3
vmacro17275 Vaccinium macrocarpon HOM05D001816 ORTHO05D002001 1.1e-11 73.9 49 65.3
CDE05G0454 Ceratophyllum demersum HOM05D001816 ORTHO05D002001 1.4e-11 73.6 45 71.1
BcaB05g22693 Brassica carinata HOM05D001816 ORTHO05D002001 1.9e-11 73.2 45 71.1
Migut.B00031 Erythranthe guttata HOM05D001816 ORTHO05D002001 1.9e-11 73.2 43 76.7
Phvul.007G142900 Phaseolus vulgaris HOM05D001816 ORTHO05D002001 1.9e-11 73.2 45 73.3
Ah.01g023480 Amaranthus hybridus HOM05D001816 ORTHO05D002001 3.2e-11 72.4 44 72.7
CDE05G1766 Ceratophyllum demersum HOM05D001816 ORTHO05D002001 3.2e-11 72.4 45 68.9
SGA_v2.0_scaffold32G13329 Striga asiatica HOM05D001816 ORTHO05D002001 4.1e-11 72.0 43 74.4
unitig_21.g20851 Utricularia gibba HOM05D001816 ORTHO05D002001 4.1e-11 72.0 43 74.4
SalBow1G5513 Salvia bowleyana HOM05D001816 ORTHO05D002001 5.4e-11 71.6 43 72.1
AT5G22800 Arabidopsis thaliana HOM05D001816 ORTHO05D002001 7.1e-11 71.2 45 71.1
CARHR190770 Cardamine hirsuta HOM05D001816 ORTHO05D002001 7.1e-11 71.2 45 71.1
SEGI_06689 Sequoiadendron giganteum HOM05D001816 ORTHO05D002001 7.1e-11 71.2 43 72.1
PGR142G1779 Punica granatum HOM05D001816 ORTHO05D002001 9.2e-11 70.9 41 75.6
PSO170G2372 Papaver somniferum HOM05D001816 ORTHO05D002001 1.2e-10 70.5 45 71.1
Carub.0006s2052 Capsella rubella HOM05D001816 ORTHO05D002001 2.1e-10 69.7 41 78.0
Zm00001eb371640 Zea mays HOM05D001816 ORTHO05D002001 2.1e-10 69.7 45 66.7
AL6G33900 Arabidopsis lyrata HOM05D001816 ORTHO05D002001 3.5e-10 68.9 45 68.9
CAN.G1552.4 Capsicum annuum HOM05D012522 ORTHO05D012714 6.0e-10 68.2 63 57.1
Thecc.02G050000 Theobroma cacao HOM05D001816 ORTHO05D002001 7.8e-10 67.8 45 66.7
MD10G1133100 Malus domestica HOM05D001816 ORTHO05D002001 3.0e-09 65.9 45 66.7
Pp3c2_4380 Physcomitrium patens HOM05D001816 ORTHO05D002001 3.0e-09 65.9 53 54.7
Gohir.A03G208200 Gossypium hirsutum HOM05D001816 ORTHO05D002001 3.9e-09 65.5 45 64.4
Gohir.D02G229700 Gossypium hirsutum HOM05D001816 ORTHO05D002001 3.9e-09 65.5 45 64.4
Gorai.005G257400 Gossypium raimondii HOM05D001816 ORTHO05D002001 3.9e-09 65.5 45 64.4
COL.COLO4_17969 Corchorus olitorius HOM05D001816 ORTHO05D002001 5.1e-09 65.1 45 64.4
Duzib132G0368 Durio zibethinus HOM05D001816 ORTHO05D002001 1.5e-08 63.5 45 62.2
Mapoly0065s0015 Marchantia polymorpha HOM05D001816 ORTHO05D002001 4.3e-08 62.0 42 64.3
CAN.G1224.1 Capsicum annuum HOM05D001816 ORTHO05D002001 1.6e-07 60.1 37 75.7
MCO11G803 Micromonas commoda HOM05D001816 ORTHO05D002001 1.1e-06 57.4 37 64.9
SMO234G0071 Selaginella moellendorffii HOM05D001816 ORTHO05D002001 1.1e-06 57.4 44 56.8
PRCOL_00002617 Prasinoderma coloniale HOM05D001816 ORTHO05D002001 2.4e-06 56.2 40 65.0


User provided reference genes

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