Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G363.3 Capsicum annuum HOM05D005316 ORTHO05D006495 0.0e+00 1570.8 1008 100.0
Nitab4.5_0003314g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 2.8e-271 939.1 1023 70.2
PGSC0003DMG400025700 Solanum tuberosum HOM05D005316 ORTHO05D006495 3.8e-268 928.7 1019 70.4
Peaxi162Scf00435g01012 Petunia axillaris HOM05D005316 ORTHO05D006495 4.9e-268 928.3 1020 69.2
Solyc10g039190.2 Solanum lycopersicum HOM05D005316 ORTHO05D006495 2.8e-263 912.5 1019 69.4
Sopen10g012250 Solanum pennellii HOM05D005316 ORTHO05D006495 2.4e-262 909.4 1019 69.4
CAN.G1038.14 Capsicum annuum HOM05D005316 ORTHO05D006495 2.5e-256 889.4 1030 68.9
vmacro07322 Vaccinium macrocarpon HOM05D005316 ORTHO05D006495 3.1e-254 882.5 1063 55.5
Nitab4.5_0002535g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 1.5e-253 880.2 1017 68.1
CSS0008696 Camellia sinensis var. sinensis HOM05D005316 ORTHO05D006495 2.0e-248 863.2 1010 57.9
PGSC0003DMG400013161 Solanum tuberosum HOM05D005316 ORTHO05D006495 4.8e-247 858.6 1019 67.2
Nitab4.5_0000108g0390 Nicotiana tabacum HOM05D005316 ORTHO05D006495 6.5e-244 848.2 1022 66.9
Rhsim03G0088900 Rhododendron simsii HOM05D005316 ORTHO05D006495 1.3e-239 833.9 1039 61.5
Actinidia26652 Actinidia chinensis HOM05D005316 ORTHO05D006495 9.4e-235 817.8 1024 63.2
Cc06_g04580 Coffea canephora HOM05D005316 ORTHO05D006495 3.0e-233 812.8 1023 63.5
PGR142G2834 Punica granatum HOM05D005316 ORTHO05D006495 3.1e-230 802.7 1014 55.3
Thecc.05G072100 Theobroma cacao HOM05D005316 ORTHO05D006495 2.7e-226 789.6 1002 63.0
Gohir.A04G069900 Gossypium hirsutum HOM05D005316 ORTHO05D006495 1.0e-225 787.7 1015 62.5
Gohir.D04G108500 Gossypium hirsutum HOM05D005316 ORTHO05D006495 4.8e-223 778.9 1000 62.7
Oeu056529.1 Olea europaea HOM05D005316 ORTHO05D006495 6.3e-223 778.5 1011 62.1
Gorai.009G412600 Gossypium raimondii HOM05D005316 ORTHO05D006495 8.3e-223 778.1 1000 62.8
MD12G1106200 Malus domestica HOM05D005316 ORTHO05D006495 8.3e-223 778.1 1019 60.5
Cpa.g.sc5.157 Carica papaya HOM05D005316 ORTHO05D006495 1.4e-222 777.3 1001 62.5
Eucgr.K02435 Eucalyptus grandis HOM05D005316 ORTHO05D006495 3.1e-222 776.2 1016 62.0
SGA_v2.0_scaffold40G15467 Striga asiatica HOM05D005316 ORTHO05D006495 7.0e-222 775.0 1043 52.0
Prupe.7G125100 Prunus persica HOM05D005316 ORTHO05D006495 4.5e-221 772.3 1020 60.7
Sabra06G0095300 Salix brachista HOM05D005316 ORTHO05D006495 4.5e-221 772.3 1008 61.3
Potri.006G121100 Populus trichocarpa HOM05D005316 ORTHO05D006495 3.8e-220 769.2 1009 59.5
Duzib128G2040 Durio zibethinus HOM05D005316 ORTHO05D006495 1.1e-219 767.7 1024 61.5
CiPaw.09G002900 Carya illinoinensis HOM05D005316 ORTHO05D006495 3.2e-219 766.1 1013 61.1
Ciclev10010984m.g Citrus clementina HOM05D005316 ORTHO05D006495 5.5e-219 765.4 1023 60.7
Atru.chr8.1745 Acer truncatum HOM05D005316 ORTHO05D006495 1.8e-217 760.4 1009 61.5
TAR369G0309 Trochodendron aralioides HOM05D005316 ORTHO05D006495 1.8e-217 760.4 1020 61.4
Nn6g35213 Nelumbo nucifera HOM05D005316 ORTHO05D006495 7.5e-216 755.0 998 60.3
TWI77G0675 Tripterygium wilfordii HOM05D005316 ORTHO05D006495 2.8e-215 753.1 1022 60.2
Dinv37343 Davidia involucrata HOM05D005316 ORTHO05D006495 6.3e-215 751.9 746 66.1
Manes.09G050526 Manihot esculenta HOM05D005316 ORTHO05D006495 8.3e-215 751.5 1026 59.5
RcHm_v2.0_Chr3g0470921 Rosa chinensis HOM05D005316 ORTHO05D006495 1.1e-214 751.1 1025 58.7
MBI19_g03558_MAGBIO Magnolia biondii HOM05D005316 ORTHO05D006495 1.4e-214 750.7 1041 44.1
ClCG04G009490 Citrullus lanatus HOM05D005316 ORTHO05D006495 2.4e-214 750.0 1012 60.1
CsaV3_6G040110 Cucumis sativus L. HOM05D005316 ORTHO05D006495 7.0e-214 748.4 1012 60.2
HanXRQChr13g0400681 Helianthus annuus HOM05D005316 ORTHO05D006495 5.9e-213 745.3 1014 60.9
Aqoxy1G00948 Aquilegia oxysepala HOM05D005316 ORTHO05D006495 7.7e-213 745.0 1014 58.1
MELO3C024484.2 Cucumis melo HOM05D005316 ORTHO05D006495 5.0e-212 742.3 1012 59.8
MSTRG.5779 Avicennia marina HOM05D005316 ORTHO05D006495 1.2e-210 737.6 1022 60.8
CANSAT80G2075 Cannabis sativa HOM05D005316 ORTHO05D006495 2.1e-210 736.9 1013 60.1
DCAR_020803 Daucus carota HOM05D005316 ORTHO05D006495 1.4e-209 734.2 1027 59.9
PSO063G2956 Papaver somniferum HOM05D005316 ORTHO05D006495 5.2e-209 732.3 1019 53.4
COL.COLO4_26906 Corchorus olitorius HOM05D005316 ORTHO05D006495 6.8e-209 731.9 1024 59.6
SalBow3G2891 Salvia bowleyana HOM05D005316 ORTHO05D006495 5.7e-208 728.8 1019 59.5
FvH4_6g16900 Fragaria vesca HOM05D005316 ORTHO05D006495 9.8e-208 728.0 1025 58.0
Lsat_1_v5_gn_6_28620 Lactuca sativa HOM05D005316 ORTHO05D006495 1.3e-207 727.6 1016 59.6
FAN05G5169 Fragaria x ananassa HOM05D005316 ORTHO05D006495 3.7e-207 726.1 1025 58.0
FAN14G0140 Fragaria x ananassa HOM05D005316 ORTHO05D006495 3.7e-207 726.1 1025 58.0
Sed0019607 Sechium edule HOM05D005316 ORTHO05D006495 4.9e-207 725.7 1012 59.3
Glyma.19G186600 Glycine max HOM05D005316 ORTHO05D006495 8.3e-207 724.9 1020 59.3
VMungo1383G0853 Vigna mungo HOM05D005316 ORTHO05D006495 2.4e-206 723.4 1020 57.2
FAN05G1083 Fragaria x ananassa HOM05D005316 ORTHO05D006495 5.4e-206 722.2 1025 57.8
AUR62043277 Chenopodium quinoa HOM05D005316 ORTHO05D006495 2.0e-205 720.3 1033 54.0
ECA233G4339 Erigeron canadensis HOM05D005316 ORTHO05D006495 2.0e-205 720.3 1024 58.9
PSO339G4035 Papaver somniferum HOM05D005316 ORTHO05D006495 2.0e-205 720.3 1024 53.4
EL10Ac7g16684 Beta vulgaris HOM05D005316 ORTHO05D006495 2.3e-204 716.8 1027 55.9
FAN09G0678 Fragaria x ananassa HOM05D005316 ORTHO05D006495 6.6e-204 715.3 1025 57.5
Ca_08924_v3 Cicer arietinum L. HOM05D005316 ORTHO05D006495 9.5e-203 711.4 1022 58.3
Glyma.03G186500 Glycine max HOM05D005316 ORTHO05D006495 4.7e-202 709.1 1020 58.6
Aa31LG9G1930 Aethionema arabicum HOM05D005316 ORTHO05D006495 1.4e-201 707.6 1006 57.0
AUR62026938 Chenopodium quinoa HOM05D005316 ORTHO05D006495 3.1e-201 706.4 1031 54.7
Thhalv10024329m.g Eutrema salsugineum HOM05D005316 ORTHO05D006495 4.0e-201 706.1 1025 58.1
TPR.G12554 Trifolium pratense HOM05D005316 ORTHO05D006495 5.2e-201 705.7 1022 57.8
Lalb_Chr01g0018571 Lupinus albus HOM05D005316 ORTHO05D006495 6.8e-201 705.3 1024 58.4
arahy.Tifrunner.gnm1.ann1.731ZEV Arachis hypogaea HOM05D005316 ORTHO05D006495 1.5e-200 704.1 1018 58.2
Sp7g13750 Schrenkiella parvula HOM05D005316 ORTHO05D006495 9.8e-200 701.4 1025 57.7
Phvul.001G181500 Phaseolus vulgaris HOM05D005316 ORTHO05D006495 4.9e-199 699.1 1020 58.3
Carub.0003s2158 Capsella rubella HOM05D005316 ORTHO05D006495 8.3e-199 698.4 1022 57.5
Medtr4g123597 Medicago truncatula HOM05D005316 ORTHO05D006495 1.1e-198 698.0 1021 57.7
QL07p042170 Quercus lobata HOM05D005316 ORTHO05D006495 1.9e-198 697.2 1196 52.5
GSVIVG01033690001 Vitis vinifera HOM05D005316 ORTHO05D006495 1.9e-198 697.2 1009 58.9
arahy.Tifrunner.gnm1.ann1.RNM8HY Arachis hypogaea HOM05D005316 ORTHO05D006495 5.4e-198 695.7 1058 56.1
CARHR097490 Cardamine hirsuta HOM05D005316 ORTHO05D006495 1.2e-197 694.5 1016 56.9
Lj3C1008T11 Lonicera japonica HOM05D005316 ORTHO05D006495 3.5e-197 693.0 819 69.1
THA.LOC104802568 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 3.0e-196 689.9 1000 58.5
Psat4g020280 Pisum sativum HOM05D005316 ORTHO05D006495 1.9e-195 687.2 1021 57.5
Ah.15g091450 Amaranthus hybridus HOM05D005316 ORTHO05D006495 1.2e-194 684.5 1034 54.6
Haze_19439 Corylus avellana HOM05D005316 ORTHO05D006495 2.1e-194 683.7 1020 49.4
AT3G21540 Arabidopsis thaliana HOM05D005316 ORTHO05D006495 4.7e-194 682.6 1019 56.0
C01p27470 Brassica napus HOM05D005316 ORTHO05D006495 1.5e-192 677.6 1022 57.3
BraA01t02113Z Brassica rapa HOM05D005316 ORTHO05D006495 2.0e-192 677.2 1022 57.2
A01p22070 Brassica napus HOM05D005316 ORTHO05D006495 2.6e-192 676.8 1022 57.1
THA.LOC104820227 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 7.5e-192 675.2 1000 57.3
BolC1t02686H Brassica oleracea HOM05D005316 ORTHO05D006495 9.8e-192 674.9 1024 57.2
AL3G35650 Arabidopsis lyrata HOM05D005316 ORTHO05D006495 4.9e-191 672.5 1007 56.3
BcaC09g50240 Brassica carinata HOM05D005316 ORTHO05D006495 3.2e-190 669.8 1024 56.9
Sc20g0005710 Simmondsia chinensis HOM05D005316 ORTHO05D006495 3.3e-187 659.8 951 58.5
Lj1g0025750 Lotus japonicus HOM05D005316 ORTHO05D006495 2.3e-185 653.7 1020 56.1
Migut.J00458 Erythranthe guttata HOM05D005316 ORTHO05D006495 7.6e-184 648.7 1027 56.7
HPP92_025964 Vanilla planifolia HOM05D005316 ORTHO05D006495 2.1e-181 640.6 1020 53.6
CDE07G2059 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 1.5e-179 634.4 1005 56.1
SHI18788 Sapria himalayana HOM05D005316 ORTHO05D006495 3.3e-179 633.3 866 62.4
unitig_578.g15787 Utricularia gibba HOM05D005316 ORTHO05D006495 3.6e-178 629.8 1021 54.8
Os03g0151700 Oryza sativa ssp. japonica HOM05D005316 ORTHO05D006495 4.3e-171 606.3 998 53.5
ATR0661G280 Amborella trichopoda HOM05D005316 ORTHO05D006495 1.4e-166 591.3 1024 50.6
RcHm_v2.0_Chr7g0224541 Rosa chinensis HOM05D005316 ORTHO05D006495 1.8e-161 574.3 985 51.6
SEGI_01067 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 5.3e-161 572.8 873 56.7
Pp3c24_9020 Physcomitrium patens HOM05D005316 ORTHO05D006495 1.8e-153 547.7 1025 50.5
Pp3c24_9070 Physcomitrium patens HOM05D005316 ORTHO05D006495 1.8e-153 547.7 1025 50.5
Zm00001eb004160 Zea mays HOM05D005316 ORTHO05D006495 5.8e-152 542.7 715 54.8
BcaC06g32938 Brassica carinata HOM05D005316 ORTHO05D006495 2.1e-146 524.2 1004 44.5
SMO144G0213 Selaginella moellendorffii HOM05D005316 ORTHO05D006495 7.2e-142 509.2 1008 48.1
Mapoly0021s0013 Marchantia polymorpha HOM05D005316 ORTHO05D006495 6.3e-138 496.1 1012 46.6
CBR_g3060 Chara braunii HOM05D005316 ORTHO05D006495 1.8e-137 494.6 1045 49.1
AagrBONN_evm.TU.Sc2ySwM_344.3757 Anthoceros agrestis HOM05D005316 ORTHO05D006495 9.0e-137 492.3 1018 47.2
CDE06G1287 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 1.9e-102 378.3 653 39.5
Cre10.g438700 Chlamydomonas reinhardtii HOM05D005316 ORTHO05D006495 6.1e-101 373.2 1007 44.1
FAN02G2889 Fragaria x ananassa HOM05D005316 ORTHO05D006495 3.4e-99 367.5 600 50.2
RcHm_v2.0_Chr2g0174151 Rosa chinensis HOM05D005316 ORTHO05D006495 1.7e-90 338.6 767 32.5
MCO12G069 Micromonas commoda HOM05D005316 ORTHO05D006495 2.1e-85 321.6 1011 34.7
Lalb_Chr20g0112451 Lupinus albus HOM05D005316 ORTHO05D006495 1.9e-81 308.5 298 56.4
PRCOL_00001463 Prasinoderma coloniale HOM05D005316 ORTHO05D006495 5.1e-63 247.3 737 37.3
Psat7g226920 Pisum sativum HOM05D003193 ORTHO05D006495 1.8e-52 212.2 247 47.8
Gohir.A13G089800 Gossypium hirsutum HOM05D005316 ORTHO05D006495 3.6e-45 188.0 182 52.7
Psat3g110240 Pisum sativum HOM05D005316 ORTHO05D017863 7.9e-40 170.2 135 58.5
PGSC0003DMG400023254 Solanum tuberosum HOM05D005316 ORTHO05D006495 3.0e-39 168.3 185 53.5
Psat0s3791g0160 Pisum sativum HOM05D005316 ORTHO05D006495 1.5e-35 156.0 122 56.6
Psat3g057760 Pisum sativum HOM05D005316 ORTHO05D006495 1.4e-28 132.9 125 49.6
Psat2g167720 Pisum sativum HOM05D005316 ORTHO05D006495 7.4e-22 110.5 121 44.6
Lalb_Chr20g0112411 Lupinus albus HOM05D005316 ORTHO05D006495 8.2e-21 107.1 128 42.2
Sc24g0000540 Simmondsia chinensis HOM05D005316 ORTHO05D006495 5.3e-20 104.4 103 47.6
Lalb_Chr20g0112421 Lupinus albus HOM05D005316 ORTHO05D006495 6.9e-20 104.0 77 71.4
SEGI_29002 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 1.2e-19 103.2 128 41.4
Psat5g092920 Pisum sativum HOM05D000083 ORTHO05D001244 1.7e-18 99.4 85 58.8
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 4.2e-17 94.7 86 59.3
SEGI_05684 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 2.1e-16 92.4 92 51.1
Lj3C1008T12 Lonicera japonica HOM05D005316 ORTHO05D006495 1.0e-15 90.1 80 60.0
SHI18789 Sapria himalayana HOM05D005316 ORTHO05D006495 1.8e-15 89.4 78 60.3
PGSC0003DMG400036928 Solanum tuberosum HOM05D005316 ORTHO05D006495 4.4e-14 84.7 103 56.3
SEGI_04707 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 1.7e-13 82.8 73 52.1
PGSC0003DMG400013159 Solanum tuberosum HOM05D005316 ORTHO05D006495 1.8e-12 79.3 62 72.6
RcHm_v2.0_Chr7g0191911 Rosa chinensis HOM05D005316 ORTHO05D006495 4.7e-08 64.7 50 64.0
SMO358G0628 Selaginella moellendorffii HOM05D004758 ORTHO05D006063 1.1e-06 60.1 181 27.6
MD04G1021900 Malus domestica HOM05D000526 ORTHO05D000956 7.4e-06 57.4 170 25.3
SEGI_00372 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 7.4e-06 57.4 43 67.4
Gohir.A02G161200 Gossypium hirsutum HOM05D000453 ORTHO05D000387 9.7e-06 57.0 115 34.8
Gohir.D03G019300 Gossypium hirsutum HOM05D000453 ORTHO05D000387 9.7e-06 57.0 115 34.8


User provided reference genes

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