Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G358.86 Capsicum annuum HOM05D004035 ORTHO05D004631 0.0e+00 1219.9 627 100.0
Nitab4.5_0000178g0040 Nicotiana tabacum HOM05D004035 ORTHO05D004631 7.5e-299 1030.0 700 79.0
Nitab4.5_0001385g0050 Nicotiana tabacum HOM05D004035 ORTHO05D004631 7.5e-299 1030.0 700 79.0
Solyc02g085220.4 Solanum lycopersicum HOM05D004035 ORTHO05D004631 1.3e-298 1029.2 700 78.7
Sopen02g029920 Solanum pennellii HOM05D004035 ORTHO05D004631 1.4e-297 1025.8 700 78.3
Solyc07g056660.4 Solanum lycopersicum HOM05D004035 ORTHO05D004631 1.2e-296 1022.7 700 78.7
Sopen07g030000 Solanum pennellii HOM05D004035 ORTHO05D004631 1.0e-295 1019.6 700 78.6
CAN.G1003.4 Capsicum annuum HOM05D004035 ORTHO05D004631 2.3e-295 1018.5 700 79.1
Peaxi162Scf00366g00121 Petunia axillaris HOM05D004035 ORTHO05D004631 1.9e-294 1015.4 697 78.9
PGSC0003DMG400003507 Solanum tuberosum HOM05D004035 ORTHO05D004631 1.0e-271 939.9 647 78.2
Dinv39986 Davidia involucrata HOM05D004035 ORTHO05D004631 2.5e-254 882.1 702 68.5
Cc03_g03620 Coffea canephora HOM05D004035 ORTHO05D004631 2.1e-253 879.0 702 68.5
CSS0025574 Camellia sinensis var. sinensis HOM05D004035 ORTHO05D004631 8.1e-253 877.1 704 68.6
Actinidia12124 Actinidia chinensis HOM05D004035 ORTHO05D004631 2.2e-250 869.0 703 67.3
Hma1.2p1_0400F.1_g144430 Hydrangea macrophylla HOM05D004035 ORTHO05D004631 4.6e-248 861.3 704 66.8
Lj2C453G20 Lonicera japonica HOM05D004035 ORTHO05D004631 4.6e-248 861.3 704 67.3
Actinidia36560 Actinidia chinensis HOM05D004035 ORTHO05D004631 3.4e-243 845.1 704 66.1
GSVIVG01018960001 Vitis vinifera HOM05D004035 ORTHO05D004631 1.9e-241 839.3 704 66.1
Manes.02G093700 Manihot esculenta HOM05D004035 ORTHO05D004631 5.5e-241 837.8 704 65.9
Migut.H00988 Erythranthe guttata HOM05D004035 ORTHO05D004631 4.6e-240 834.7 703 64.7
Atru.chr3.574 Acer truncatum HOM05D004035 ORTHO05D004631 6.0e-240 834.3 705 65.5
CiPaw.01G038000 Carya illinoinensis HOM05D004035 ORTHO05D004631 1.1e-238 830.1 705 64.5
Thecc.01G133800 Theobroma cacao HOM05D004035 ORTHO05D004631 7.4e-238 827.4 702 65.8
SGA_v2.0_scaffold276G46626 Striga asiatica HOM05D004035 ORTHO05D004631 9.6e-238 827.0 724 63.3
Duzib147G1708 Durio zibethinus HOM05D004035 ORTHO05D004631 3.7e-237 825.1 715 64.8
COL.COLO4_22081 Corchorus olitorius HOM05D004035 ORTHO05D004631 1.1e-236 823.5 702 65.8
Ciclev10024797m.g Citrus clementina HOM05D004035 ORTHO05D004631 1.8e-236 822.8 704 65.3
Cfa004306 Carpinus fangiana HOM05D004035 ORTHO05D004631 2.4e-236 822.4 703 64.2
Haze_15090 Corylus avellana HOM05D004035 ORTHO05D004631 2.4e-236 822.4 702 64.1
Rhsim02G0182400 Rhododendron simsii HOM05D004035 ORTHO05D004631 4.0e-236 821.6 706 64.2
PGR102G3072 Punica granatum HOM05D004035 ORTHO05D004631 5.3e-236 821.2 703 63.7
QL06p046086 Quercus lobata HOM05D004035 ORTHO05D004631 6.9e-236 820.8 704 64.5
CANSAT01G0227 Cannabis sativa HOM05D004035 ORTHO05D004631 2.6e-235 818.9 702 64.4
Gorai.007G203400 Gossypium raimondii HOM05D004035 ORTHO05D004631 4.5e-235 818.1 704 65.3
Gohir.D11G190900 Gossypium hirsutum HOM05D004035 ORTHO05D004631 1.0e-234 817.0 704 65.3
SalBow8G0583 Salvia bowleyana HOM05D004035 ORTHO05D004631 1.7e-234 816.2 698 63.6
Potri.005G123000 Populus trichocarpa HOM05D004035 ORTHO05D004631 3.8e-234 815.1 704 63.9
Gohir.A11G184400 Gossypium hirsutum HOM05D004035 ORTHO05D004631 6.5e-234 814.3 704 65.1
MD15G1261900 Malus domestica HOM05D004035 ORTHO05D004631 4.2e-233 811.6 703 64.3
Eucgr.H01269 Eucalyptus grandis HOM05D004035 ORTHO05D004631 5.5e-233 811.2 704 62.5
Sabra07G0022700 Salix brachista HOM05D004035 ORTHO05D004631 4.6e-232 808.1 700 63.6
Prupe.7G154500 Prunus persica HOM05D004035 ORTHO05D004631 8.7e-231 803.9 699 63.9
TWI73G0243 Tripterygium wilfordii HOM05D004035 ORTHO05D004631 1.1e-230 803.5 704 63.5
MD02G1147600 Malus domestica HOM05D004035 ORTHO05D004631 9.7e-230 800.4 701 63.3
Potri.007G025700 Populus trichocarpa HOM05D004035 ORTHO05D004631 4.8e-229 798.1 702 63.0
Sed0003321 Sechium edule HOM05D004035 ORTHO05D004631 1.8e-228 796.2 702 63.4
RcHm_v2.0_Chr2g0101581 Rosa chinensis HOM05D004035 ORTHO05D004631 4.1e-228 795.0 710 62.8
TAR376G0366 Trochodendron aralioides HOM05D004035 ORTHO05D004631 1.3e-226 790.0 703 62.7
ClCG07G009230 Citrullus lanatus HOM05D004035 ORTHO05D004631 2.2e-226 789.3 701 62.3
vmacro11086 Vaccinium macrocarpon HOM05D004035 ORTHO05D004631 5.0e-226 788.1 785 58.0
MELO3C017565.2 Cucumis melo HOM05D004035 ORTHO05D004631 6.5e-226 787.7 701 62.8
FAN26G1872 Fragaria x ananassa HOM05D004035 ORTHO05D004631 1.1e-225 786.9 708 62.4
CsaV3_UNG172360 Cucumis sativus L. HOM05D004035 ORTHO05D004631 7.2e-225 784.3 701 62.8
HanXRQChr16g0530441 Helianthus annuus HOM05D004035 ORTHO05D004631 1.2e-224 783.5 699 62.5
ECA246G3379 Erigeron canadensis HOM05D004035 ORTHO05D004631 4.6e-224 781.6 701 62.2
FAN28G2497 Fragaria x ananassa HOM05D004035 ORTHO05D004631 1.4e-223 780.0 708 61.9
FAN19G0080 Fragaria x ananassa HOM05D004035 ORTHO05D004631 9.7e-222 773.9 693 62.9
FvH4_1g13311 Fragaria vesca HOM05D004035 ORTHO05D004631 1.7e-221 773.1 708 61.6
Glyma.01G176000 Glycine max HOM05D004035 ORTHO05D004631 6.3e-221 771.2 701 61.1
AUR62004050 Chenopodium quinoa HOM05D004035 ORTHO05D004631 8.2e-221 770.8 701 61.2
AUR62007565 Chenopodium quinoa HOM05D004035 ORTHO05D004631 8.2e-221 770.8 701 61.2
Phvul.002G030300 Phaseolus vulgaris HOM05D004035 ORTHO05D004631 3.4e-219 765.4 701 61.3
Lj2g0023524 Lotus japonicus HOM05D004035 ORTHO05D004631 7.7e-219 764.2 702 61.5
Nn1g04984 Nelumbo nucifera HOM05D004035 ORTHO05D004631 2.2e-218 762.7 702 61.0
Glyma.11G068300 Glycine max HOM05D004035 ORTHO05D004631 2.5e-217 759.2 701 60.6
arahy.Tifrunner.gnm1.ann1.GM6JEQ Arachis hypogaea HOM05D004035 ORTHO05D004631 3.2e-217 758.8 702 61.5
EL10Ac6g15563 Beta vulgaris HOM05D004035 ORTHO05D004631 3.2e-217 758.8 702 60.5
VMungo1215G2866 Vigna mungo HOM05D004035 ORTHO05D004631 5.5e-217 758.1 701 60.5
arahy.Tifrunner.gnm1.ann1.6E6Z42 Arachis hypogaea HOM05D004035 ORTHO05D004631 2.7e-216 755.7 702 61.3
Ah.02g125200 Amaranthus hybridus HOM05D004035 ORTHO05D004631 2.0e-214 749.6 702 59.8
Lalb_Chr09g0322391 Lupinus albus HOM05D004035 ORTHO05D004631 1.7e-213 746.5 698 61.5
Ca_24847_v3 Cicer arietinum L. HOM05D004035 ORTHO05D004631 2.0e-211 739.6 701 60.2
TPR.G22289 Trifolium pratense HOM05D004035 ORTHO05D004631 2.9e-210 735.7 702 60.1
Carub.0007s0370 Capsella rubella HOM05D004035 ORTHO05D004631 1.1e-209 733.8 705 58.4
AL7G14420 Arabidopsis lyrata HOM05D004035 ORTHO05D004631 9.4e-209 730.7 705 58.0
Aqoxy6G01113 Aquilegia oxysepala HOM05D004035 ORTHO05D004631 2.1e-208 729.6 703 57.9
LjContig00448g0016984 Lotus japonicus HOM05D004035 ORTHO05D004631 2.1e-208 729.6 702 59.0
MBI07_g11484_MAGBIO Magnolia biondii HOM05D004035 ORTHO05D004631 2.7e-208 729.2 701 59.1
Lsat_1_v5_gn_3_76401 Lactuca sativa HOM05D004035 ORTHO05D004631 1.0e-207 727.2 693 59.9
DCAR_025943 Daucus carota HOM05D004035 ORTHO05D004631 1.8e-207 726.5 701 58.5
Thhalv10024305m.g Eutrema salsugineum HOM05D004035 ORTHO05D004631 1.8e-207 726.5 705 57.9
PSO675G4195 Papaver somniferum HOM05D004035 ORTHO05D004631 3.9e-207 725.3 701 57.9
Lalb_Chr16g0388281 Lupinus albus HOM05D004035 ORTHO05D004631 6.7e-207 724.5 702 59.0
PSO541G3635 Papaver somniferum HOM05D004035 ORTHO05D004631 1.5e-206 723.4 701 57.9
CARHR244970 Cardamine hirsuta HOM05D004035 ORTHO05D004631 2.6e-206 722.6 706 57.4
Sp7g34290 Schrenkiella parvula HOM05D004035 ORTHO05D004631 2.6e-206 722.6 705 57.6
Psat2g159680 Pisum sativum HOM05D004035 ORTHO05D004631 4.4e-206 721.8 700 59.4
Gorai.003G015100 Gossypium raimondii HOM05D004035 ORTHO05D004631 7.4e-206 721.1 701 59.1
Lj1g0016074 Lotus japonicus HOM05D004035 ORTHO05D004631 1.3e-205 720.3 705 58.7
A03p64370 Brassica napus HOM05D004035 ORTHO05D004631 2.8e-205 719.2 705 57.6
C07p61810 Brassica napus HOM05D004035 ORTHO05D004631 3.7e-205 718.8 705 57.4
BraA03t15502Z Brassica rapa HOM05D004035 ORTHO05D004631 8.2e-205 717.6 705 57.4
AT4G36630 Arabidopsis thaliana HOM05D004035 ORTHO05D004631 1.1e-204 717.2 705 57.0
BolC7t46602H Brassica oleracea HOM05D004035 ORTHO05D004631 1.8e-204 716.5 705 57.2
Medtr8g077680 Medicago truncatula HOM05D004035 ORTHO05D004631 3.5e-203 712.2 700 57.1
DCAR_017291 Daucus carota HOM05D004035 ORTHO05D004631 1.0e-202 710.7 646 61.6
TAR362G0832 Trochodendron aralioides HOM05D004035 ORTHO05D004631 1.0e-202 710.7 707 58.3
Psat4g092560 Pisum sativum HOM05D004035 ORTHO05D004631 1.3e-202 710.3 700 57.4
TPR.G34978 Trifolium pratense HOM05D004035 ORTHO05D004631 2.2e-202 709.5 698 57.2
arahy.Tifrunner.gnm1.ann1.JC6DGE Arachis hypogaea HOM05D004035 ORTHO05D004631 6.5e-202 708.0 701 57.5
unitig_52.g17587 Utricularia gibba HOM05D004035 ORTHO05D004631 1.1e-201 707.2 691 58.0
Ca_22265_v3 Cicer arietinum L. HOM05D004035 ORTHO05D004631 7.2e-201 704.5 700 55.9
arahy.Tifrunner.gnm1.ann1.ZDS5RA Arachis hypogaea HOM05D004035 ORTHO05D004631 5.2e-199 698.4 701 56.8
Lsat_1_v5_gn_4_152080 Lactuca sativa HOM05D004035 ORTHO05D004631 5.2e-199 698.4 706 56.8
ECA232G2840 Erigeron canadensis HOM05D004035 ORTHO05D004631 6.8e-199 698.0 701 56.8
Aa31LG6G13430 Aethionema arabicum HOM05D004035 ORTHO05D004631 1.7e-197 693.3 721 54.2
Gohir.D03G014800 Gossypium hirsutum HOM05D004035 ORTHO05D004631 7.0e-196 688.0 682 58.1
Ca_22279_v3 Cicer arietinum L. HOM05D004035 ORTHO05D004631 3.0e-191 672.5 709 54.0
Nn7g37554 Nelumbo nucifera HOM05D004035 ORTHO05D004631 2.0e-190 669.8 702 55.8
HanXRQChr09g0261471 Helianthus annuus HOM05D004035 ORTHO05D004631 1.6e-184 650.2 701 53.4
PSO837G0008 Papaver somniferum HOM05D004035 ORTHO05D004631 8.0e-184 647.9 703 54.1
PSO017G4184 Papaver somniferum HOM05D004035 ORTHO05D004631 1.4e-183 647.1 703 53.8
BcaC01g00456 Brassica carinata HOM05D004035 ORTHO05D004631 1.5e-182 643.7 696 54.0
Medtr5g020140 Medicago truncatula HOM05D004035 ORTHO05D004631 1.3e-181 640.6 627 59.2
ATR0743G236 Amborella trichopoda HOM05D004035 ORTHO05D004631 7.8e-179 631.3 698 53.2
Os03g0715500 Oryza sativa ssp. japonica HOM05D004035 ORTHO05D004631 3.3e-177 625.9 702 52.1
Sc03g0002970 Simmondsia chinensis HOM05D004035 ORTHO05D004631 2.8e-176 622.9 599 57.6
Zm00001eb055180 Zea mays HOM05D004035 ORTHO05D004631 2.7e-171 606.3 702 50.7
CDE09G0689 Ceratophyllum demersum HOM05D004035 ORTHO05D004631 7.5e-166 588.2 700 49.4
Oeu042264.1 Olea europaea HOM05D004035 ORTHO05D004631 5.6e-161 572.0 533 61.4
CsaV3_4G004990 Cucumis sativus L. HOM05D004035 ORTHO05D004631 3.4e-142 509.6 495 59.4
C03p80030 Brassica napus HOM05D004035 ORTHO05D004631 8.7e-138 495.0 566 52.1
RcHm_v2.0_Chr2g0101111 Rosa chinensis HOM05D004035 ORTHO05D004631 3.2e-132 476.5 452 60.0
SEGI_13313 Sequoiadendron giganteum HOM05D004035 ORTHO05D004631 8.7e-130 468.4 671 44.3
Thecc.01G035900 Theobroma cacao HOM05D004035 ORTHO05D004631 1.5e-129 467.6 335 73.7
PGSC0003DMG400027646 Solanum tuberosum HOM05D004035 ORTHO05D004631 1.5e-126 457.6 268 88.4
Gohir.A02G165200 Gossypium hirsutum HOM05D004035 ORTHO05D004631 1.8e-122 444.1 477 54.9
Mapoly0160s0027 Marchantia polymorpha HOM05D004035 ORTHO05D004631 5.7e-113 412.5 717 38.4
Cpa.g.sc1294.1 Carica papaya HOM05D004035 ORTHO05D004631 6.1e-107 392.5 318 67.9
Oeu033646.1 Olea europaea HOM05D004035 ORTHO05D004631 6.1e-107 392.5 619 42.8
Pp3c10_5300 Physcomitrium patens HOM05D004035 ORTHO05D004631 1.8e-106 391.0 733 38.3
Cpa.g.sc1294.3 Carica papaya HOM05D004035 ORTHO05D004631 1.5e-102 377.9 295 68.8
A08p22280 Brassica napus HOM05D004035 ORTHO05D004631 4.2e-100 369.8 510 44.9
BolC3t20257H Brassica oleracea HOM05D004035 ORTHO05D004631 7.4e-97 359.0 454 48.5
Thecc.01G036000 Theobroma cacao HOM05D004035 ORTHO05D004631 5.0e-93 346.3 274 69.7
HPP92_004247 Vanilla planifolia HOM05D004035 ORTHO05D004631 3.6e-91 340.1 333 56.5
AagrBONN_evm.TU.Sc2ySwM_340.480 Anthoceros agrestis HOM05D004035 ORTHO05D004631 3.7e-88 330.1 661 36.0
SMO145G0075 Selaginella moellendorffii HOM05D004035 ORTHO05D004631 2.9e-85 320.5 710 34.1
SHI32099 Sapria himalayana HOM05D004035 ORTHO05D004631 8.3e-80 302.4 293 56.0
RcHm_v2.0_Chr2g0101101 Rosa chinensis HOM05D004035 ORTHO05D004631 2.0e-78 297.7 235 68.9
Oeu042265.1 Olea europaea HOM05D004035 ORTHO05D004631 7.8e-62 242.7 177 70.1
TPR.G13573 Trifolium pratense HOM05D004035 ORTHO05D004631 4.7e-59 233.4 206 62.1
BcaB03g12382 Brassica carinata HOM05D004035 ORTHO05D004631 6.6e-53 213.0 168 66.1
BraA08t34187Z Brassica rapa HOM05D004035 ORTHO05D004631 5.2e-50 203.4 273 44.0
CsaV3_4G004980 Cucumis sativus L. HOM05D004035 ORTHO05D004631 2.9e-48 197.6 179 62.0
Oeu009413.1 Olea europaea HOM05D004035 ORTHO05D004631 1.1e-42 179.1 565 32.0
TPR.G13595 Trifolium pratense HOM05D004035 ORTHO05D004631 2.3e-29 134.8 141 59.6
TPR.G13585 Trifolium pratense HOM05D004035 ORTHO05D004631 4.3e-28 130.6 103 72.8
Lsat_1_v5_gn_8_105180 Lactuca sativa HOM05D004035 ORTHO05D004631 2.6e-25 121.3 211 43.6
CBR_g34968 Chara braunii HOM05D004035 ORTHO05D004631 5.8e-25 120.2 122 48.4
C03p80040 Brassica napus HOM05D004035 ORTHO05D004631 3.1e-18 97.8 96 57.3
BolC3t20258H Brassica oleracea HOM05D004035 ORTHO05D004631 3.1e-18 97.8 96 57.3
Cre06.g278124 Chlamydomonas reinhardtii HOM05D004035 ORTHO05D004631 5.1e-13 80.5 140 35.0
ATR0800G151 Amborella trichopoda HOM05D004035 ORTHO05D004631 3.3e-12 77.8 74 52.7
Duzib264G0986 Durio zibethinus HOM05D004035 ORTHO05D004631 3.3e-12 77.8 97 47.4
BolC3t20256H Brassica oleracea HOM05D004035 ORTHO05D004631 3.4e-09 67.8 40 82.5
PRCOL_00006719 Prasinoderma coloniale HOM05D004035 ORTHO05D004631 1.4e-07 62.4 652 20.9
Zm00001eb267510 Zea mays HOM05D005380 ORTHO05D006601 1.9e-07 62.0 140 27.1
CANSAT80G1059 Cannabis sativa HOM05D005380 ORTHO05D006601 6.0e-06 57.0 302 21.5


User provided reference genes

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