Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G352.79 Capsicum annuum HOM05D015980 ORTHO05D115045 5.0e-65 251.1 143 100.0
CAN.G3728.1 Capsicum annuum HOM05D015980 ORTHO05D115695 1.6e-58 229.6 142 93.0
CAN.G352.82 Capsicum annuum HOM05D015980 ORTHO05D115441 2.1e-47 192.6 122 91.0
CAN.G352.71 Capsicum annuum HOM05D015980 ORTHO05D114873 1.3e-17 93.6 95 57.9
CAN.G352.81 Capsicum annuum HOM05D000789 ORTHO05D115161 2.3e-17 92.8 64 75.0
CAN.G352.85 Capsicum annuum HOM05D000789 ORTHO05D115775 9.5e-16 87.4 68 67.6
Solyc06g072040.1 Solanum lycopersicum HOM05D000789 ORTHO05D000897 5.2e-14 81.6 129 38.0
Sopen06g028330 Solanum pennellii HOM05D000789 ORTHO05D000897 5.2e-14 81.6 129 38.0
Solyc03g110860.3 Solanum lycopersicum HOM05D000789 ORTHO05D000897 4.4e-13 78.6 131 37.4
PGSC0003DMG402015259 Solanum tuberosum HOM05D000789 ORTHO05D000897 9.9e-13 77.4 131 37.4
Sopen03g030050 Solanum pennellii HOM05D000789 ORTHO05D000897 1.3e-12 77.0 131 36.6
CAN.G352.69 Capsicum annuum HOM05D015980 ORTHO05D114990 2.9e-12 75.9 96 44.8
Nitab4.5_0003948g0020 Nicotiana tabacum HOM05D000789 ORTHO05D000897 1.9e-11 73.2 127 38.6
Nitab4.5_0000624g0020 Nicotiana tabacum HOM05D000789 ORTHO05D000897 2.4e-11 72.8 133 39.1
CAN.G352.68 Capsicum annuum HOM05D015980 ORTHO05D115690 3.2e-11 72.4 86 64.0
Nitab4.5_0001311g0050 Nicotiana tabacum HOM05D000789 ORTHO05D000897 9.2e-11 70.9 133 37.6
Dinv23155 Davidia involucrata HOM05D000789 ORTHO05D000897 1.2e-10 70.5 128 38.3
CAN.G352.67 Capsicum annuum HOM05D000789 ORTHO05D000897 3.5e-10 68.9 132 35.6
TWI14G0831 Tripterygium wilfordii HOM05D000789 ORTHO05D000897 3.5e-10 68.9 131 38.2
GSVIVG01008570001 Vitis vinifera HOM05D000789 ORTHO05D000897 3.5e-10 68.9 145 35.9
Nitab4.5_0000339g0100 Nicotiana tabacum HOM05D000789 ORTHO05D000897 6.0e-10 68.2 129 36.4
CAN.G65.36 Capsicum annuum HOM05D000789 ORTHO05D000897 7.8e-10 67.8 127 34.6
TWI23G0098 Tripterygium wilfordii HOM05D000789 ORTHO05D000897 6.6e-09 64.7 131 37.4
PGSC0003DMG400015177 Solanum tuberosum HOM05D000789 ORTHO05D000897 8.6e-09 64.3 141 43.3
FvH4_5g08391 Fragaria vesca HOM05D000789 ORTHO05D000897 1.5e-08 63.5 127 36.2
FAN18G4126 Fragaria x ananassa HOM05D000789 ORTHO05D000897 1.5e-08 63.5 127 36.2
Atru.chr6.1801 Acer truncatum HOM05D000789 ORTHO05D000897 1.9e-08 63.2 129 34.1
Manes.14G050900 Manihot esculenta HOM05D000789 ORTHO05D000897 1.9e-08 63.2 128 36.7
ClCG06G017930 Citrullus lanatus HOM05D000789 ORTHO05D000897 2.5e-08 62.8 127 37.0
FAN08G0116 Fragaria x ananassa HOM05D000789 ORTHO05D000466 4.3e-08 62.0 127 36.2
Peaxi162Scf00089g00023 Petunia axillaris HOM05D000789 ORTHO05D000897 4.3e-08 62.0 140 35.0
Potri.015G097400 Populus trichocarpa HOM05D000789 ORTHO05D000897 4.3e-08 62.0 129 36.4
RcHm_v2.0_Chr7g0190051 Rosa chinensis HOM05D000789 ORTHO05D000897 4.3e-08 62.0 127 35.4
MD14G1156400 Malus domestica HOM05D000789 ORTHO05D000897 5.6e-08 61.6 68 52.9
Sopen03g030560 Solanum pennellii HOM05D000002 ORTHO05D002065 5.6e-08 61.6 127 44.9
CARHR157380 Cardamine hirsuta HOM05D000789 ORTHO05D000897 9.5e-08 60.8 67 47.8
Ciclev10032646m.g Citrus clementina HOM05D000789 ORTHO05D000897 9.5e-08 60.8 70 50.0
Sabra15G0118100 Salix brachista HOM05D000789 ORTHO05D000897 9.5e-08 60.8 129 36.4
MELO3C026204.2 Cucumis melo HOM05D000789 ORTHO05D000897 1.2e-07 60.5 127 36.2
CsaV3_1G000520 Cucumis sativus L. HOM05D000789 ORTHO05D000897 1.2e-07 60.5 127 36.2
MD06G1141200 Malus domestica HOM05D000789 ORTHO05D000897 1.2e-07 60.5 68 51.5
Prupe.5G150400 Prunus persica HOM05D000789 ORTHO05D000897 1.2e-07 60.5 128 36.7
Sabra12G0071900 Salix brachista HOM05D000789 ORTHO05D000897 1.2e-07 60.5 128 37.5
Dinv11181 Davidia involucrata HOM05D000789 ORTHO05D000897 1.6e-07 60.1 129 37.2
Gorai.001G058500 Gossypium raimondii HOM05D000789 ORTHO05D000897 2.1e-07 59.7 69 53.6
TAR629G0626 Trochodendron aralioides HOM05D000789 ORTHO05D000897 2.1e-07 59.7 111 36.9
TAR629G0558 Trochodendron aralioides HOM05D000789 ORTHO05D000897 2.8e-07 59.3 111 36.0
Gohir.D07G055300 Gossypium hirsutum HOM05D000789 ORTHO05D000897 3.6e-07 58.9 69 53.6
Actinidia08878 Actinidia chinensis HOM05D000789 ORTHO05D000897 4.7e-07 58.5 67 49.3
Actinidia36811 Actinidia chinensis HOM05D000789 ORTHO05D000897 4.7e-07 58.5 67 49.3
Hma1.2p1_0014F.1_g009340 Hydrangea macrophylla HOM05D000789 ORTHO05D000897 4.7e-07 58.5 129 34.1
Potri.012G098500 Populus trichocarpa HOM05D000789 ORTHO05D000897 4.7e-07 58.5 128 35.2
CANSAT80G2391 Cannabis sativa HOM05D000789 ORTHO05D000897 1.1e-06 57.4 127 35.4
Eucgr.K02714 Eucalyptus grandis HOM05D000789 ORTHO05D000897 1.1e-06 57.4 60 48.3
AL5G28040 Arabidopsis lyrata HOM05D000789 ORTHO05D000897 1.4e-06 57.0 68 47.1
AT3G48590 Arabidopsis thaliana HOM05D000789 ORTHO05D000897 1.4e-06 57.0 68 47.1
Eucgr.B00106 Eucalyptus grandis HOM05D000789 ORTHO05D000897 1.8e-06 56.6 60 50.0
CAN.G352.77 Capsicum annuum HOM05D015980 ORTHO05D115700 2.4e-06 56.2 79 41.8
Haze_07147 Corylus avellana HOM05D000789 ORTHO05D000897 2.4e-06 56.2 54 51.9
Duzib068G0355 Durio zibethinus HOM05D000789 ORTHO05D000897 2.4e-06 56.2 67 47.8
Nn4g22298 Nelumbo nucifera HOM05D000789 ORTHO05D000897 2.4e-06 56.2 124 33.1
Thecc.03G130100 Theobroma cacao HOM05D000789 ORTHO05D000897 2.4e-06 56.2 132 37.1
Aa31LG1G18570 Aethionema arabicum HOM05D000789 ORTHO05D000897 3.1e-06 55.8 69 47.8
Carub.0005s1478 Capsella rubella HOM05D000789 ORTHO05D000897 3.1e-06 55.8 68 45.6
COL.COLO4_28137 Corchorus olitorius HOM05D000789 ORTHO05D000897 3.1e-06 55.8 119 33.6
Gohir.1Z049609 Gossypium hirsutum HOM05D000789 ORTHO05D000897 3.1e-06 55.8 69 50.7
Gohir.A07G050801 Gossypium hirsutum HOM05D000789 ORTHO05D000897 3.1e-06 55.8 69 50.7
Manes.06G120200 Manihot esculenta HOM05D000789 ORTHO05D000897 3.1e-06 55.8 128 35.9
Nn3g16442 Nelumbo nucifera HOM05D000789 ORTHO05D000897 3.1e-06 55.8 122 33.6
TPR.G14225 Trifolium pratense HOM05D000789 ORTHO05D000897 4.0e-06 55.5 54 55.6
CARHR277320 Cardamine hirsuta HOM05D000789 ORTHO05D000897 5.2e-06 55.1 69 44.9
Lalb_Chr23g0273601 Lupinus albus HOM05D000789 ORTHO05D000897 5.2e-06 55.1 54 50.0
Sp2g26550 Schrenkiella parvula HOM05D000789 ORTHO05D000897 5.2e-06 55.1 67 44.8
Sed0010355 Sechium edule HOM05D000789 ORTHO05D000897 5.2e-06 55.1 63 47.6
Solyc03g111450.3 Solanum lycopersicum HOM05D000789 ORTHO05D002065 5.2e-06 55.1 57 49.1
Ca_16050_v3 Cicer arietinum L. HOM05D000789 ORTHO05D000897 6.8e-06 54.7 127 34.6
Duzib084G0605 Durio zibethinus HOM05D000789 ORTHO05D000897 6.8e-06 54.7 71 49.3
Duzib205G0589 Durio zibethinus HOM05D000789 ORTHO05D000897 8.9e-06 54.3 68 50.0
Oeu018542.1 Olea europaea HOM05D000789 ORTHO05D000897 8.9e-06 54.3 83 39.8
Oeu018544.1 Olea europaea HOM05D000789 ORTHO05D000897 8.9e-06 54.3 83 39.8
Hund02445 Selenicereus undatus HOM05D000789 ORTHO05D000897 8.9e-06 54.3 132 32.6


User provided reference genes

Program Settings