Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G337.145 Capsicum annuum HOM05D006308 ORTHO05D007820 2.9e-120 435.3 222 100.0
CAN.G943.39 Capsicum annuum HOM05D006308 ORTHO05D007820 1.2e-25 120.9 85 74.1
Solyc07g066460.3 Solanum lycopersicum HOM05D006308 ORTHO05D007820 3.5e-25 119.4 85 71.8
Sopen07g034640 Solanum pennellii HOM05D006308 ORTHO05D007820 3.5e-25 119.4 85 71.8
PGSC0003DMG400022127 Solanum tuberosum HOM05D006308 ORTHO05D007820 3.5e-25 119.4 85 71.8
Peaxi162Scf00452g00832 Petunia axillaris HOM05D006308 ORTHO05D007820 7.8e-25 118.2 85 71.8
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.3e-24 117.5 60 93.3
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.1e-23 114.4 85 70.6
CSS0031885 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 1.5e-23 114.0 85 67.1
CSS0041769 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 1.5e-23 114.0 85 67.1
FAN16G0301 Fragaria x ananassa HOM05D006308 ORTHO05D007820 1.5e-23 114.0 150 44.7
Dinv42509 Davidia involucrata HOM05D006308 ORTHO05D007820 1.9e-23 113.6 85 67.1
Atru.chr2.1759 Acer truncatum HOM05D006308 ORTHO05D007820 2.5e-23 113.2 90 65.6
Eucgr.F01457 Eucalyptus grandis HOM05D006308 ORTHO05D007820 2.5e-23 113.2 124 54.8
Oeu051665.1 Olea europaea HOM05D006308 ORTHO05D007820 2.5e-23 113.2 60 85.0
PGR083G0385 Punica granatum HOM05D006308 ORTHO05D007820 3.3e-23 112.8 125 51.2
FvH4_3g15760 Fragaria vesca HOM05D006308 ORTHO05D007820 4.3e-23 112.5 150 44.7
FAN11G0128 Fragaria x ananassa HOM05D006308 ORTHO05D007820 4.3e-23 112.5 150 44.7
FAN21G3038 Fragaria x ananassa HOM05D006308 ORTHO05D007820 4.3e-23 112.5 150 44.7
THA.LOC104822752 Tarenaya hassleriana HOM05D006308 ORTHO05D007820 4.3e-23 112.5 65 81.5
FAN25G0513 Fragaria x ananassa HOM05D006308 ORTHO05D007820 5.6e-23 112.1 150 44.7
CARHR087450 Cardamine hirsuta HOM05D006308 ORTHO05D007820 7.3e-23 111.7 135 48.9
GSVIVG01020411001 Vitis vinifera HOM05D006308 ORTHO05D007820 7.3e-23 111.7 122 52.5
AT3G12930 Arabidopsis thaliana HOM05D006308 ORTHO05D007820 9.6e-23 111.3 65 80.0
BcaC09g48280 Brassica carinata HOM05D006308 ORTHO05D007820 9.6e-23 111.3 65 80.0
A01p40570 Brassica napus HOM05D006308 ORTHO05D007820 9.6e-23 111.3 65 80.0
C01p52210 Brassica napus HOM05D006308 ORTHO05D007820 9.6e-23 111.3 65 80.0
BolC1t05161H Brassica oleracea HOM05D006308 ORTHO05D007820 9.6e-23 111.3 65 80.0
BraA01t04092Z Brassica rapa HOM05D006308 ORTHO05D007820 9.6e-23 111.3 65 80.0
Aa31LG8G150 Aethionema arabicum HOM05D006308 ORTHO05D007820 1.2e-22 110.9 65 80.0
CiPaw.12G004900 Carya illinoinensis HOM05D006308 ORTHO05D007820 1.2e-22 110.9 90 63.3
CDE06G0902 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 1.2e-22 110.9 124 51.6
MSTRG.7060 Avicennia marina HOM05D006308 ORTHO05D007820 1.6e-22 110.5 84 66.7
Carub.0005s0924 Capsella rubella HOM05D006308 ORTHO05D007820 1.6e-22 110.5 65 78.5
Gohir.A04G049000 Gossypium hirsutum HOM05D006308 ORTHO05D007820 1.6e-22 110.5 140 46.4
Psat1g011160 Pisum sativum HOM05D006308 ORTHO05D007820 2.1e-22 110.2 85 67.1
Sp3g11070 Schrenkiella parvula HOM05D006308 ORTHO05D007820 2.1e-22 110.2 65 78.5
Thecc.07G152500 Theobroma cacao HOM05D006308 ORTHO05D007820 2.1e-22 110.2 136 47.1
arahy.Tifrunner.gnm1.ann1.1EF43V Arachis hypogaea HOM05D006308 ORTHO05D007820 2.8e-22 109.8 85 65.9
arahy.Tifrunner.gnm1.ann1.HXV25C Arachis hypogaea HOM05D006308 ORTHO05D007820 2.8e-22 109.8 103 55.3
Ca_03675_v3 Cicer arietinum L. HOM05D006308 ORTHO05D007820 2.8e-22 109.8 60 83.3
Glyma.08G172200 Glycine max HOM05D006308 ORTHO05D007820 2.8e-22 109.8 60 83.3
Glyma.15G255800 Glycine max HOM05D006308 ORTHO05D007820 2.8e-22 109.8 60 83.3
Gohir.D05G331300 Gossypium hirsutum HOM05D006308 ORTHO05D007820 2.8e-22 109.8 131 51.1
Lalb_Chr20g0108751 Lupinus albus HOM05D006308 ORTHO05D007820 2.8e-22 109.8 125 51.2
Ciclev10021874m.g Citrus clementina HOM05D006308 ORTHO05D007820 3.6e-22 109.4 127 48.8
Gorai.009G355200 Gossypium raimondii HOM05D006308 ORTHO05D007820 3.6e-22 109.4 131 48.9
unitig_46.g18521 Utricularia gibba HOM05D006308 ORTHO05D007820 3.6e-22 109.4 85 64.7
Haze_08539 Corylus avellana HOM05D006308 ORTHO05D007820 4.7e-22 109.0 60 81.7
MD10G1202500 Malus domestica HOM05D006308 ORTHO05D007820 4.7e-22 109.0 153 44.4
Sabra16G0310800 Salix brachista HOM05D006308 ORTHO05D007820 4.7e-22 109.0 90 63.3
MBI04_g08705_MAGBIO Magnolia biondii HOM05D006308 ORTHO05D007820 6.2e-22 108.6 85 64.7
Rhsim06G0239000 Rhododendron simsii HOM05D006308 ORTHO05D007820 6.2e-22 108.6 60 81.7
TPR.G9745 Trifolium pratense HOM05D006308 ORTHO05D007820 6.2e-22 108.6 60 83.3
VMungo1080G0665 Vigna mungo HOM05D006308 ORTHO05D007820 6.2e-22 108.6 60 81.7
ATR0605G149 Amborella trichopoda HOM05D006308 ORTHO05D007820 8.1e-22 108.2 85 64.7
AL3G24610 Arabidopsis lyrata HOM05D006308 ORTHO05D007820 8.1e-22 108.2 136 48.5
CsaV3_4G007640 Cucumis sativus L. HOM05D006308 ORTHO05D007820 8.1e-22 108.2 90 63.3
Duzib213G0994 Durio zibethinus HOM05D006308 ORTHO05D007820 8.1e-22 108.2 90 60.0
Potri.001G458600 Populus trichocarpa HOM05D006308 ORTHO05D007820 8.1e-22 108.2 90 63.3
MELO3C016177.2 Cucumis melo HOM05D006308 ORTHO05D007820 1.1e-21 107.8 90 62.2
Manes.14G016400 Manihot esculenta HOM05D006308 ORTHO05D007820 1.1e-21 107.8 90 61.1
Potri.011G142900 Populus trichocarpa HOM05D006308 ORTHO05D007820 1.1e-21 107.8 90 62.2
QL08p064492 Quercus lobata HOM05D006308 ORTHO05D007820 1.1e-21 107.8 85 63.5
Medtr2g069470 Medicago truncatula HOM05D006308 ORTHO05D007820 1.4e-21 107.5 138 48.6
Nn6g31547 Nelumbo nucifera HOM05D006308 ORTHO05D007820 1.4e-21 107.5 85 63.5
SalBow8G4544 Salvia bowleyana HOM05D006308 ORTHO05D007820 1.4e-21 107.5 98 54.1
TAR381G0490 Trochodendron aralioides HOM05D006308 ORTHO05D007820 1.4e-21 107.5 86 62.8
ClCG07G010660 Citrullus lanatus HOM05D006308 ORTHO05D007820 1.8e-21 107.1 90 62.2
Migut.M01556 Erythranthe guttata HOM05D006308 ORTHO05D007820 2.4e-21 106.7 62 77.4
Hma1.2p1_0334F.1_g128750 Hydrangea macrophylla HOM05D006308 ORTHO05D007820 2.4e-21 106.7 85 63.5
SGA_v2.0_scaffold186G40217 Striga asiatica HOM05D006308 ORTHO05D007820 2.4e-21 106.7 60 80.0
Aqoxy5G00928 Aquilegia oxysepala HOM05D006308 ORTHO05D007820 3.1e-21 106.3 119 50.4
BcaB06g25499 Brassica carinata HOM05D006308 ORTHO05D007820 3.1e-21 106.3 65 73.8
Sed0010671 Sechium edule HOM05D006308 ORTHO05D007820 3.1e-21 106.3 90 61.1
Thhalv10021431m.g Eutrema salsugineum HOM05D006308 ORTHO05D007820 4.0e-21 105.9 135 47.4
Sabra11G0127800 Salix brachista HOM05D006308 ORTHO05D007820 4.0e-21 105.9 94 58.5
BcaC05g29223 Brassica carinata HOM05D006308 ORTHO05D007820 5.2e-21 105.5 105 51.4
Sed0016869 Sechium edule HOM05D006308 ORTHO05D007820 5.2e-21 105.5 111 51.4
Lj3g0010937 Lotus japonicus HOM05D006308 ORTHO05D007820 6.9e-21 105.1 138 46.4
vmacro11665 Vaccinium macrocarpon HOM05D006308 ORTHO05D007820 6.9e-21 105.1 121 48.8
BolC5t34167H Brassica oleracea HOM05D006308 ORTHO05D007820 8.9e-21 104.8 136 45.6
Phvul.005G057100 Phaseolus vulgaris HOM05D006308 ORTHO05D007820 8.9e-21 104.8 85 62.4
A05p36560 Brassica napus HOM05D006308 ORTHO05D007820 1.2e-20 104.4 135 45.2
C05p54980 Brassica napus HOM05D006308 ORTHO05D007820 1.2e-20 104.4 131 46.6
RcHm_v2.0_Chr5g0026561 Rosa chinensis HOM05D006308 ORTHO05D007820 1.2e-20 104.4 139 44.6
Cc05_g16080 Coffea canephora HOM05D006308 ORTHO05D007820 1.5e-20 104.0 71 73.2
Lj1A905G40 Lonicera japonica HOM05D006308 ORTHO05D007820 1.5e-20 104.0 85 62.4
TWI39G0290 Tripterygium wilfordii HOM05D006308 ORTHO05D007820 1.5e-20 104.0 136 46.3
AUR62043126 Chenopodium quinoa HOM05D006308 ORTHO05D007820 2.0e-20 103.6 60 78.3
Ah.16g106540 Amaranthus hybridus HOM05D006308 ORTHO05D007820 2.6e-20 103.2 114 50.9
BraA05t22456Z Brassica rapa HOM05D006308 ORTHO05D007820 3.4e-20 102.8 136 45.6
CANSAT80G1356 Cannabis sativa HOM05D006308 ORTHO05D007820 3.4e-20 102.8 129 47.3
CDE08G1673 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 4.4e-20 102.4 119 51.3
ECA234G3728 Erigeron canadensis HOM05D006308 ORTHO05D007820 5.8e-20 102.1 62 74.2
COL.COLO4_07328 Corchorus olitorius HOM05D006308 ORTHO05D007820 7.6e-20 101.7 136 44.9
PSO017G0504 Papaver somniferum HOM05D006308 ORTHO05D007820 7.6e-20 101.7 81 63.0
PSO170G1595 Papaver somniferum HOM05D006308 ORTHO05D007820 7.6e-20 101.7 81 63.0
EL10Ac2g03321 Beta vulgaris HOM05D006308 ORTHO05D007820 9.9e-20 101.3 60 78.3
Sc06g0001530 Simmondsia chinensis HOM05D006308 ORTHO05D007820 1.3e-19 100.9 85 58.8
HPP92_015477 Vanilla planifolia HOM05D006308 ORTHO05D007820 1.3e-19 100.9 119 50.4
Prupe.4G139700 Prunus persica HOM05D006308 ORTHO05D007820 1.7e-19 100.5 160 41.2
HanXRQChr10g0305791 Helianthus annuus HOM05D006308 ORTHO05D007820 2.9e-19 99.8 60 75.0
Lsat_1_v5_gn_5_125241 Lactuca sativa HOM05D006308 ORTHO05D007820 2.9e-19 99.8 60 75.0
Hund12461 Selenicereus undatus HOM05D006308 ORTHO05D007820 1.9e-18 97.1 85 58.8
Mapoly0031s0088 Marchantia polymorpha HOM05D006308 ORTHO05D007820 2.4e-18 96.7 60 70.0
Os09g0493600 Oryza sativa ssp. japonica HOM05D006308 ORTHO05D007820 7.1e-18 95.1 78 61.5
DCAR_016822 Daucus carota HOM05D006308 ORTHO05D007820 2.1e-17 93.6 60 70.0
Pp3c9_2790 Physcomitrium patens HOM05D006308 ORTHO05D007820 3.5e-17 92.8 62 62.9
SEGI_12516 Sequoiadendron giganteum HOM05D006308 ORTHO05D007820 1.0e-16 91.3 90 54.4
Actinidia07352 Actinidia chinensis HOM05D006308 ORTHO05D007820 1.5e-15 87.4 46 87.0
AagrBONN_evm.TU.Sc2ySwM_228.3592 Anthoceros agrestis HOM05D006308 ORTHO05D007820 2.1e-14 83.6 123 39.0
SMO367G0472 Selaginella moellendorffii HOM05D006308 ORTHO05D007820 2.8e-14 83.2 109 40.4
CAN.G943.41 Capsicum annuum HOM05D000010 ORTHO05D000865 4.5e-12 75.9 37 97.3
Nitab4.5_0001080g0020 Nicotiana tabacum HOM05D000010 ORTHO05D000865 9.9e-12 74.7 37 94.6
Nitab4.5_0002321g0060 Nicotiana tabacum HOM05D000010 ORTHO05D000865 9.9e-12 74.7 37 94.6
PGSC0003DMG400039898 Solanum tuberosum HOM05D000010 ORTHO05D000865 2.2e-11 73.6 37 91.9
Peaxi162Scf00452g00720 Petunia axillaris HOM05D000010 ORTHO05D000865 3.8e-11 72.8 37 89.2
Cc05_g16190 Coffea canephora HOM05D000010 ORTHO05D000865 4.6e-09 65.9 39 84.6
Manes.06G172000 Manihot esculenta HOM05D006308 ORTHO05D007820 4.6e-09 65.9 47 66.0
Dinv42505 Davidia involucrata HOM05D000010 ORTHO05D000865 7.9e-09 65.1 38 78.9
Actinidia12793 Actinidia chinensis HOM05D006308 ORTHO05D007820 1.8e-08 63.9 45 62.2
CSS0034425 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D000865 2.3e-08 63.5 38 81.6
Rhsim06G0239700 Rhododendron simsii HOM05D000010 ORTHO05D000865 3.0e-08 63.2 38 81.6
vmacro11673 Vaccinium macrocarpon HOM05D000010 ORTHO05D000865 3.0e-08 63.2 38 81.6
PGSC0003DMG400021119 Solanum tuberosum HOM05D000010 ORTHO05D000865 5.1e-08 62.4 60 53.3
MSTRG.14548 Avicennia marina HOM05D000010 ORTHO05D000865 6.7e-08 62.0 37 73.0
Solyc02g069960.4 Solanum lycopersicum HOM05D000010 ORTHO05D000865 8.7e-08 61.6 59 55.9
Sopen02g019100 Solanum pennellii HOM05D000010 ORTHO05D000865 8.7e-08 61.6 59 55.9
Oeu051669.1 Olea europaea HOM05D000010 ORTHO05D000865 1.5e-07 60.8 46 58.7
Actinidia37116 Actinidia chinensis HOM05D000010 ORTHO05D000865 1.9e-07 60.5 39 74.4
Nn3g18400 Nelumbo nucifera HOM05D006308 ORTHO05D007820 2.5e-07 60.1 65 50.8
Pp3c15_7010 Physcomitrium patens HOM05D006308 ORTHO05D007820 2.5e-07 60.1 67 38.8
Actinidia12784 Actinidia chinensis HOM05D000010 ORTHO05D000865 3.3e-07 59.7 38 76.3
CiPaw.11G065300 Carya illinoinensis HOM05D000010 ORTHO05D000865 4.3e-07 59.3 37 75.7
CiPaw.11G065500 Carya illinoinensis HOM05D000010 ORTHO05D000865 4.3e-07 59.3 37 75.7
Actinidia07361 Actinidia chinensis HOM05D000010 ORTHO05D000865 2.1e-06 57.0 38 71.1
MSTRG.13071 Avicennia marina HOM05D000010 ORTHO05D000865 2.1e-06 57.0 37 73.0
FAN25G3830 Fragaria x ananassa HOM05D000010 ORTHO05D000865 2.1e-06 57.0 37 70.3
CAN.G79.29 Capsicum annuum HOM05D000010 ORTHO05D000865 3.6e-06 56.2 83 43.4
FvH4_3g11860 Fragaria vesca HOM05D000010 ORTHO05D000865 3.6e-06 56.2 97 38.1
FAN16G3456 Fragaria x ananassa HOM05D000010 ORTHO05D000865 6.2e-06 55.5 36 69.4
MSTRG.16108 Avicennia marina HOM05D000010 ORTHO05D000865 8.1e-06 55.1 169 32.0
Lj3g0023736 Lotus japonicus HOM05D000010 ORTHO05D000865 8.1e-06 55.1 37 64.9
Oeu045203.1 Olea europaea HOM05D000010 ORTHO05D000865 8.1e-06 55.1 46 54.3


User provided reference genes

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