Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G322.107 Capsicum annuum HOM05D004755 ORTHO05D006137 0.0e+00 1381.3 762 100.0
Sopen01g051540 Solanum pennellii HOM05D004755 ORTHO05D006137 0.0e+00 1293.9 760 93.6
Solyc01g109350.3 Solanum lycopersicum HOM05D004755 ORTHO05D006137 0.0e+00 1287.3 760 93.2
Nitab4.5_0004280g0140 Nicotiana tabacum HOM05D004755 ORTHO05D006137 0.0e+00 1254.6 747 84.6
Nitab4.5_0004287g0030 Nicotiana tabacum HOM05D004755 ORTHO05D006137 0.0e+00 1239.2 740 85.1
Peaxi162Scf00016g01034 Petunia axillaris HOM05D004755 ORTHO05D006137 0.0e+00 1228.0 740 90.8
Lj5A201G28 Lonicera japonica HOM05D004755 ORTHO05D006137 0.0e+00 1110.9 760 79.1
Gorai.012G146700 Gossypium raimondii HOM05D004755 ORTHO05D006137 0.0e+00 1096.6 761 76.9
Gohir.D04G159300 Gossypium hirsutum HOM05D004755 ORTHO05D006137 0.0e+00 1095.9 761 77.0
Manes.17G099000 Manihot esculenta HOM05D004755 ORTHO05D006137 0.0e+00 1091.3 760 76.3
CSS0003833 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D006137 0.0e+00 1090.1 760 78.0
CSS0019785 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D006137 0.0e+00 1090.1 760 78.0
Actinidia00497 Actinidia chinensis HOM05D004755 ORTHO05D006137 0.0e+00 1087.8 760 76.7
Gohir.A04G117600 Gossypium hirsutum HOM05D004755 ORTHO05D006137 0.0e+00 1087.4 761 76.3
Prupe.8G104600 Prunus persica HOM05D004755 ORTHO05D006137 0.0e+00 1086.6 760 77.0
COL.COLO4_32463 Corchorus olitorius HOM05D004755 ORTHO05D006137 0.0e+00 1086.2 760 76.6
Ciclev10027868m.g Citrus clementina HOM05D004755 ORTHO05D006137 0.0e+00 1085.5 760 76.3
Cc02_g17900 Coffea canephora HOM05D004755 ORTHO05D006137 0.0e+00 1085.5 760 77.0
Cfa004975 Carpinus fangiana HOM05D004755 ORTHO05D006137 0.0e+00 1084.3 761 76.2
Thecc.02G121800 Theobroma cacao HOM05D004755 ORTHO05D006137 0.0e+00 1083.9 759 76.4
MD10G1082200 Malus domestica HOM05D004755 ORTHO05D006137 0.0e+00 1079.3 757 77.3
Migut.B00268 Erythranthe guttata HOM05D004755 ORTHO05D006137 0.0e+00 1077.0 761 76.1
CiPaw.05G060900 Carya illinoinensis HOM05D004755 ORTHO05D006137 5.2e-312 1074.3 760 75.3
GSVIVG01031913001 Vitis vinifera HOM05D004755 ORTHO05D006137 2.2e-308 1062.0 760 75.0
RcHm_v2.0_Chr6g0262551 Rosa chinensis HOM05D004755 ORTHO05D006137 2.8e-308 1061.6 762 75.6
Duzib132G0528 Durio zibethinus HOM05D004755 ORTHO05D006137 3.7e-308 1061.2 761 74.9
Lj3g0013592 Lotus japonicus HOM05D004755 ORTHO05D006137 2.4e-307 1058.5 757 75.4
Potri.T125104 Populus trichocarpa HOM05D004755 ORTHO05D006137 7.7e-306 1053.5 762 73.1
Potri.009G112184 Populus trichocarpa HOM05D004755 ORTHO05D006137 1.3e-305 1052.7 762 73.1
Glyma.12G045800 Glycine max HOM05D004755 ORTHO05D006137 2.9e-305 1051.6 760 74.5
FvH4_2g08030 Fragaria vesca HOM05D004755 ORTHO05D006137 5.0e-305 1050.8 762 74.5
Potri.004G150700 Populus trichocarpa HOM05D004755 ORTHO05D006137 1.1e-304 1049.7 760 73.3
TWI75G0180 Tripterygium wilfordii HOM05D004755 ORTHO05D006137 1.1e-304 1049.7 762 73.8
FAN15G3513 Fragaria x ananassa HOM05D004755 ORTHO05D006137 4.2e-304 1047.7 770 73.8
Glyma.11G120700 Glycine max HOM05D004755 ORTHO05D006137 2.7e-303 1045.0 760 74.1
Phvul.011G047700 Phaseolus vulgaris HOM05D004755 ORTHO05D006137 2.3e-302 1042.0 760 73.7
FAN20G2502 Fragaria x ananassa HOM05D004755 ORTHO05D006137 1.5e-301 1039.3 778 72.9
arahy.Tifrunner.gnm1.ann1.CRQ4KQ Arachis hypogaea HOM05D004755 ORTHO05D006137 7.5e-301 1036.9 760 73.9
QL11p042321 Quercus lobata HOM05D004755 ORTHO05D006137 2.2e-300 1035.4 833 63.0
arahy.Tifrunner.gnm1.ann1.A0G0F1 Arachis hypogaea HOM05D004755 ORTHO05D006137 2.8e-300 1035.0 760 73.9
Sabra09G0085600 Salix brachista HOM05D004755 ORTHO05D006137 4.8e-300 1034.2 762 71.7
VMungo1127G1904 Vigna mungo HOM05D004755 ORTHO05D006137 2.4e-299 1031.9 760 73.3
Psat7g185120 Pisum sativum HOM05D004755 ORTHO05D006137 7.0e-299 1030.4 760 73.6
FAN24G1877 Fragaria x ananassa HOM05D004755 ORTHO05D006137 4.5e-298 1027.7 787 71.8
Hund06220 Selenicereus undatus HOM05D004755 ORTHO05D006137 7.7e-298 1026.9 758 65.7
Sabra04G0100200 Salix brachista HOM05D004755 ORTHO05D006137 1.3e-297 1026.2 759 65.3
Haze_02419 Corylus avellana HOM05D004755 ORTHO05D006137 1.1e-296 1023.1 761 72.3
MBI16_g13149_MAGBIO Magnolia biondii HOM05D004755 ORTHO05D006137 2.5e-296 1021.9 761 71.9
Medtr4g069090 Medicago truncatula HOM05D004755 ORTHO05D006137 2.1e-295 1018.8 762 72.3
Lalb_Chr01g0002741 Lupinus albus HOM05D004755 ORTHO05D006137 2.7e-295 1018.5 761 73.7
AL3G32250 Arabidopsis lyrata HOM05D004755 ORTHO05D006137 1.4e-294 1016.1 758 71.6
Lalb_Chr03g0025821 Lupinus albus HOM05D004755 ORTHO05D006137 2.3e-294 1015.4 761 72.8
AT3G18860 Arabidopsis thaliana HOM05D004755 ORTHO05D006137 1.2e-293 1013.1 760 71.2
Aa31LG8G5700 Aethionema arabicum HOM05D004755 ORTHO05D006137 1.5e-293 1012.7 758 71.2
AUR62016701 Chenopodium quinoa HOM05D004755 ORTHO05D006137 2.0e-293 1012.3 763 72.0
AUR62011360 Chenopodium quinoa HOM05D004755 ORTHO05D006137 2.6e-293 1011.9 757 72.3
Thhalv10020129m.g Eutrema salsugineum HOM05D004755 ORTHO05D006137 1.7e-292 1009.2 758 71.8
Carub.0003s1870 Capsella rubella HOM05D004755 ORTHO05D006137 3.7e-292 1008.1 758 71.6
vmacro02143 Vaccinium macrocarpon HOM05D004755 ORTHO05D006137 5.4e-291 1004.2 800 70.1
THA.LOC104798811 Tarenaya hassleriana HOM05D004755 ORTHO05D006137 7.0e-291 1003.8 758 71.5
PGR142G0564 Punica granatum HOM05D004755 ORTHO05D006137 1.0e-289 1000.0 760 72.2
Nn5g29490 Nelumbo nucifera HOM05D004755 ORTHO05D006137 2.2e-289 998.8 761 71.0
A05p30690 Brassica napus HOM05D004755 ORTHO05D006137 2.9e-289 998.4 758 70.6
BraA05t21911Z Brassica rapa HOM05D004755 ORTHO05D006137 2.9e-289 998.4 758 70.3
Sed0014712 Sechium edule HOM05D004755 ORTHO05D006137 1.5e-288 996.1 760 71.3
BcaB06g25940 Brassica carinata HOM05D004755 ORTHO05D006137 1.2e-287 993.0 758 70.2
C05p46570 Brassica napus HOM05D004755 ORTHO05D006137 2.7e-287 991.9 758 70.2
CARHR094310 Cardamine hirsuta HOM05D004755 ORTHO05D006137 2.7e-287 991.9 759 70.5
Sp3g16960 Schrenkiella parvula HOM05D004755 ORTHO05D006137 3.6e-287 991.5 758 70.6
A03p40880 Brassica napus HOM05D004755 ORTHO05D006137 1.0e-286 989.9 758 69.7
BraA03t13246Z Brassica rapa HOM05D004755 ORTHO05D006137 1.0e-286 989.9 758 69.7
BolC5t33386H Brassica oleracea HOM05D004755 ORTHO05D006137 1.4e-286 989.6 758 70.1
Ah.01g006160 Amaranthus hybridus HOM05D004755 ORTHO05D006137 1.0e-281 973.4 758 68.9
EL10Ac9g21762 Beta vulgaris HOM05D004755 ORTHO05D006137 1.5e-280 969.5 761 67.9
Dinv23556 Davidia involucrata HOM05D004755 ORTHO05D006137 2.8e-279 965.3 645 79.2
Aqoxy5G01708 Aquilegia oxysepala HOM05D004755 ORTHO05D006137 1.8e-278 962.6 758 68.7
Atru.chr5.2935 Acer truncatum HOM05D004755 ORTHO05D006137 5.2e-278 961.1 672 77.4
C03p49850 Brassica napus HOM05D004755 ORTHO05D006137 8.9e-278 960.3 802 65.5
BolC3t17278H Brassica oleracea HOM05D004755 ORTHO05D006137 1.1e-275 953.4 817 64.3
Rhsim11G0173300 Rhododendron simsii HOM05D004755 ORTHO05D006137 1.1e-275 953.4 776 69.6
CsaV3_7G010210 Cucumis sativus L. HOM05D004755 ORTHO05D006137 3.2e-275 951.8 760 68.8
ECA240G4701 Erigeron canadensis HOM05D004755 ORTHO05D006137 2.3e-273 945.7 751 69.5
TAR628G0908 Trochodendron aralioides HOM05D004755 ORTHO05D006137 2.3e-273 945.7 721 71.6
unitig_746.g26712 Utricularia gibba HOM05D004755 ORTHO05D006137 3.0e-273 945.3 759 68.1
ClCG02G005310 Citrullus lanatus HOM05D004755 ORTHO05D006137 1.5e-272 943.0 809 59.7
DCAR_022097 Daucus carota HOM05D004755 ORTHO05D006137 1.9e-272 942.6 672 77.5
MELO3C018404.2 Cucumis melo HOM05D004755 ORTHO05D006137 2.8e-271 938.7 760 68.0
BcaC01g03670 Brassica carinata HOM05D004755 ORTHO05D006137 6.2e-271 937.6 777 59.7
SGA_v2.0_scaffold58G20570 Striga asiatica HOM05D004755 ORTHO05D006137 8.9e-270 933.7 799 65.5
Lsat_1_v5_gn_9_109321 Lactuca sativa HOM05D004755 ORTHO05D006137 5.8e-269 931.0 759 69.8
PSO700G0113 Papaver somniferum HOM05D004755 ORTHO05D006137 2.2e-268 929.1 757 68.2
HanXRQChr08g0216571 Helianthus annuus HOM05D004755 ORTHO05D006137 1.1e-267 926.8 721 71.8
Ca_20846_v3 Cicer arietinum L. HOM05D004755 ORTHO05D006137 2.4e-267 925.6 760 68.3
Eucgr.I01243 Eucalyptus grandis HOM05D004755 ORTHO05D006137 1.9e-259 899.4 672 74.0
TPR.G28052 Trifolium pratense HOM05D004755 ORTHO05D006137 3.3e-256 888.6 670 71.9
Os07g0123700 Oryza sativa ssp. japonica HOM05D004755 ORTHO05D006137 8.1e-255 884.0 755 64.4
PSO170G5490 Papaver somniferum HOM05D004755 ORTHO05D006137 3.4e-253 878.6 757 66.1
Sc18g0004710 Simmondsia chinensis HOM05D004755 ORTHO05D006137 2.3e-241 839.3 626 73.2
ATR0733G059 Amborella trichopoda HOM05D004755 ORTHO05D006137 1.4e-235 820.1 751 60.2
Cpa.g.sc62.108 Carica papaya HOM05D004755 ORTHO05D006137 9.3e-227 790.8 563 69.1
SalBow6G2421 Salvia bowleyana HOM05D004755 ORTHO05D006137 2.2e-212 743.0 570 66.1
Oeu010556.1 Olea europaea HOM05D004755 ORTHO05D006137 1.3e-204 717.2 532 75.4
Mapoly0131s0025 Marchantia polymorpha HOM05D004755 ORTHO05D006137 6.7e-201 704.9 768 53.5
HPP92_001848 Vanilla planifolia HOM05D004755 ORTHO05D006137 2.2e-191 673.3 755 49.5
Pp3c13_21390 Physcomitrium patens HOM05D004755 ORTHO05D006137 3.0e-185 652.9 766 51.2
SMO146G0209 Selaginella moellendorffii HOM05D004755 ORTHO05D006137 3.3e-184 649.4 770 49.1
AagrBONN_evm.TU.Sc2ySwM_368.721 Anthoceros agrestis HOM05D004755 ORTHO05D006137 1.2e-181 641.0 662 55.6
Zm00001eb299230 Zea mays HOM05D004755 ORTHO05D006137 2.7e-173 613.2 525 66.3
CBR_g24445 Chara braunii HOM05D004755 ORTHO05D006137 6.0e-149 532.3 756 46.2
BcaNung06950 Brassica carinata HOM05D004755 ORTHO05D006137 8.6e-148 528.5 397 64.2
QL07p047567 Quercus lobata HOM05D004755 ORTHO05D006137 3.7e-143 513.1 442 61.8
Hma1.2p1_0066F.1_g036770 Hydrangea macrophylla HOM05D004755 ORTHO05D006137 1.2e-136 491.5 345 71.6
Hma1.2p1_0066F.1_g036750 Hydrangea macrophylla HOM05D004755 ORTHO05D006137 4.6e-133 479.6 340 84.4
Oeu010560.1 Olea europaea HOM05D004755 ORTHO05D006137 3.1e-105 387.1 276 72.1
QL11p041479 Quercus lobata HOM05D004755 ORTHO05D006137 8.5e-95 352.4 376 52.4
SHI05426 Sapria himalayana HOM05D004755 ORTHO05D006137 2.5e-86 324.3 335 61.5
AagrBONN_evm.TU.Sc2ySwM_368.805 Anthoceros agrestis HOM05D004755 ORTHO05D006137 3.7e-74 283.9 338 58.6
Cfa023312 Carpinus fangiana HOM05D004755 ORTHO05D006137 3.7e-74 283.9 796 27.5
MCO13G192 Micromonas commoda HOM05D004755 ORTHO05D006137 2.0e-72 278.1 825 27.8
SalBow6G1464 Salvia bowleyana HOM05D004755 ORTHO05D006137 2.0e-72 278.1 162 78.4
Cre09.g389912 Chlamydomonas reinhardtii HOM05D004755 ORTHO05D006137 1.3e-71 275.4 882 33.1
Lsat_1_v5_gn_9_93780 Lactuca sativa HOM05D004755 ORTHO05D006137 1.7e-63 248.4 146 78.8
SEGI_27412 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 8.5e-63 246.1 157 66.9
SHI05427 Sapria himalayana HOM05D004755 ORTHO05D006137 4.4e-59 233.8 204 55.4
FAN02G3646 Fragaria x ananassa HOM05D004755 ORTHO05D006137 7.7e-56 223.0 174 62.1
Cpa.g.sc62.109 Carica papaya HOM05D004755 ORTHO05D006137 5.9e-48 196.8 130 66.9
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 8.6e-47 193.0 157 61.1
PRCOL_00000489 Prasinoderma coloniale HOM05D004755 ORTHO05D006137 1.2e-40 172.6 833 23.4
Lsat_1_v5_gn_3_56800 Lactuca sativa HOM05D004755 ORTHO05D006137 3.0e-39 167.9 137 65.7
SEGI_26304 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 1.4e-36 159.1 124 58.1
Thecc.09G060700 Theobroma cacao HOM05D004755 ORTHO05D006137 6.0e-32 143.7 102 76.5
TPR.G18928 Trifolium pratense HOM05D004755 ORTHO05D006137 1.6e-29 135.6 134 59.0
Glyma.01G127800 Glycine max HOM05D004755 ORTHO05D006137 6.2e-29 133.7 91 79.1
QL11p041511 Quercus lobata HOM05D004755 ORTHO05D006137 2.6e-27 128.3 90 77.8
QL11p041806 Quercus lobata HOM05D004755 ORTHO05D006137 3.4e-27 127.9 90 77.8
CDE05G0342 Ceratophyllum demersum HOM05D004755 ORTHO05D006137 3.2e-25 121.3 104 53.8
QL11p041742 Quercus lobata HOM05D004755 ORTHO05D006137 3.2e-25 121.3 90 74.4
Lsat_1_v5_gn_3_67820 Lactuca sativa HOM05D001195 ORTHO05D001138 5.4e-25 120.6 82 75.6
Rhsim12G0078300 Rhododendron simsii HOM05D004755 ORTHO05D006137 9.2e-25 119.8 111 56.8
CAN.G572.59 Capsicum annuum HOM05D000541 ORTHO05D000137 6.6e-23 113.6 124 55.6
PGSC0003DMG400025184 Solanum tuberosum HOM05D004755 ORTHO05D006137 4.3e-22 110.9 69 91.3
Ca_08127_v3 Cicer arietinum L. HOM05D009313 ORTHO05D011011 1.6e-21 109.0 85 57.6
SEGI_36377 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 2.1e-21 108.6 87 62.1
CsaV3_6G026350 Cucumis sativus L. HOM05D004755 ORTHO05D006137 3.4e-19 101.3 57 75.4
SEGI_11122 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 1.1e-17 96.3 85 62.4
CARHR099950 Cardamine hirsuta HOM05D004755 ORTHO05D006137 1.9e-17 95.5 73 61.6
BcaB01g04780 Brassica carinata HOM05D040276 ORTHO05D039688 6.6e-15 87.0 66 56.1
BcaB01g04782 Brassica carinata HOM05D004755 ORTHO05D039688 6.6e-15 87.0 69 53.6
SEGI_07035 Sequoiadendron giganteum HOM05D004755 ORTHO05D014145 1.9e-14 85.5 124 71.0
TAR376G1072 Trochodendron aralioides HOM05D004755 ORTHO05D006137 2.5e-14 85.1 66 56.1
CsaV3_2G000030 Cucumis sativus L. HOM05D004755 ORTHO05D006137 9.9e-11 73.2 45 73.3
Haze_01851 Corylus avellana HOM05D004755 ORTHO05D006137 9.3e-09 66.6 44 79.5
FAN07G0204 Fragaria x ananassa HOM05D000453 ORTHO05D000387 2.1e-08 65.5 150 30.7
CARHR219250 Cardamine hirsuta HOM05D004755 ORTHO05D006137 1.0e-07 63.2 61 52.5
Atru.chr9.806 Acer truncatum HOM05D003769 ORTHO05D004521 1.3e-07 62.8 286 23.8
Manes.01G013600 Manihot esculenta HOM05D003769 ORTHO05D004521 3.9e-07 61.2 366 21.6
Potri.015G049500 Populus trichocarpa HOM05D003769 ORTHO05D004521 3.9e-07 61.2 274 22.3
QL11p042075 Quercus lobata HOM05D004755 ORTHO05D006137 3.9e-07 61.2 35 77.1
Gohir.D11G213250 Gossypium hirsutum HOM05D004755 ORTHO05D036105 1.1e-06 59.7 37 75.7
Gorai.007G229200 Gossypium raimondii HOM05D004755 ORTHO05D036105 1.1e-06 59.7 37 75.7
Potri.012G060800 Populus trichocarpa HOM05D003769 ORTHO05D004521 1.5e-06 59.3 274 22.6
Gohir.A11G209850 Gossypium hirsutum HOM05D004755 ORTHO05D036105 1.9e-06 58.9 37 75.7
PRCOL_00003955 Prasinoderma coloniale HOM05D017291 ORTHO05D017328 4.3e-06 57.8 96 33.3
TPR.G17575 Trifolium pratense HOM05D001335 ORTHO05D001184 5.6e-06 57.4 106 32.1
Ciclev10018557m.g Citrus clementina HOM05D003769 ORTHO05D004521 7.3e-06 57.0 285 22.5
FAN12G3656 Fragaria x ananassa HOM05D000453 ORTHO05D000387 7.3e-06 57.0 150 29.3
Sabra12G0044000 Salix brachista HOM05D003769 ORTHO05D004521 7.3e-06 57.0 268 21.3
CARHR039080 Cardamine hirsuta HOM05D003769 ORTHO05D004521 9.6e-06 56.6 280 23.6


User provided reference genes

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