Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G29.17 Capsicum annuum HOM05D000580 ORTHO05D006815 9.3e-37 156.4 80 100.0
CAN.G219.32 Capsicum annuum HOM05D000580 ORTHO05D006815 9.0e-32 139.8 80 88.8
HanXRQChr05g0139711 Helianthus annuus HOM05D000580 ORTHO05D006815 1.3e-30 136.0 80 87.5
HanXRQChr05g0152611 Helianthus annuus HOM05D000580 ORTHO05D006815 1.3e-30 136.0 80 87.5
HanXRQChr08g0223961 Helianthus annuus HOM05D000580 ORTHO05D006815 1.3e-30 136.0 80 87.5
HanXRQChr10g0283641 Helianthus annuus HOM05D000580 ORTHO05D006815 1.3e-30 136.0 80 87.5
HanXRQChr10g0284331 Helianthus annuus HOM05D000580 ORTHO05D006815 1.3e-30 136.0 80 87.5
HanXRQChr10g0318111 Helianthus annuus HOM05D000580 ORTHO05D006815 1.3e-30 136.0 80 87.5
HanXRQChr11g0341921 Helianthus annuus HOM05D000580 ORTHO05D006815 1.3e-30 136.0 80 87.5
HanXRQChr14g0459311 Helianthus annuus HOM05D000580 ORTHO05D006815 1.3e-30 136.0 80 87.5
HanXRQCPg0580131 Helianthus annuus HOM05D000580 ORTHO05D006815 1.3e-30 136.0 80 87.5
HanXRQChr02g0038651 Helianthus annuus HOM05D000580 ORTHO05D006815 6.5e-30 133.7 80 85.0
HanXRQChr02g0052691 Helianthus annuus HOM05D000580 ORTHO05D006815 6.5e-30 133.7 80 86.2
HanXRQChr11g0345231 Helianthus annuus HOM05D000580 ORTHO05D006815 1.4e-29 132.5 80 85.0
SGA_v2.0_scaffold479G52254 Striga asiatica HOM05D000580 ORTHO05D006815 5.5e-29 130.6 80 85.0
CAN.G131.5 Capsicum annuum HOM05D000580 ORTHO05D006815 9.4e-29 129.8 74 90.5
HanXRQChr04g0094321 Helianthus annuus HOM05D000580 ORTHO05D006815 9.4e-29 129.8 80 83.8
CAN.G1478.5 Capsicum annuum HOM05D000580 ORTHO05D006815 2.1e-28 128.6 91 76.9
CAN.G1513.10 Capsicum annuum HOM05D000580 ORTHO05D006815 7.9e-28 126.7 74 87.8
CAN.G129.14 Capsicum annuum HOM05D000580 ORTHO05D006815 1.0e-27 126.3 80 81.2
Gohir.A09G103100 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.0e-27 126.3 74 86.5
Gohir.1Z078601 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.4e-27 125.9 74 86.5
Gohir.A09G043800 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.4e-27 125.9 74 86.5
Gohir.A12G228900 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.4e-27 125.9 74 86.5
Gohir.D01G102060 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.4e-27 125.9 74 86.5
Gorai.010G031500 Gossypium raimondii HOM05D000580 ORTHO05D006815 1.4e-27 125.9 74 86.5
CAN.G1595.6 Capsicum annuum HOM05D000580 ORTHO05D006815 1.8e-27 125.6 74 86.5
CAN.G648.1 Capsicum annuum HOM05D000580 ORTHO05D006815 3.0e-27 124.8 80 80.0
CSS0026029 Camellia sinensis var. sinensis HOM05D000580 ORTHO05D006815 3.9e-27 124.4 74 86.5
Hma1.2p1_0218F.1_g092720 Hydrangea macrophylla HOM05D000580 ORTHO05D006815 5.1e-27 124.0 80 80.0
Hma1.2p1_2223F.1_g317406 Hydrangea macrophylla HOM05D000580 ORTHO05D006815 5.1e-27 124.0 80 80.0
Gohir.1Z049866 Gossypium hirsutum HOM05D000580 ORTHO05D006815 6.7e-27 123.6 74 85.1
Gohir.A12G178620 Gossypium hirsutum HOM05D000580 ORTHO05D006815 6.7e-27 123.6 74 85.1
Gohir.A12G178665 Gossypium hirsutum HOM05D000580 ORTHO05D006815 6.7e-27 123.6 74 85.1
Gohir.A03G093700 Gossypium hirsutum HOM05D000580 ORTHO05D006815 8.8e-27 123.2 74 85.1
Eucgr.F03245 Eucalyptus grandis HOM05D000580 ORTHO05D006815 1.1e-26 122.9 74 85.1
Potri.011G074901 Populus trichocarpa HOM05D000580 ORTHO05D006815 1.1e-26 122.9 74 85.1
Potri.011G113742 Populus trichocarpa HOM05D000580 ORTHO05D006815 1.1e-26 122.9 74 85.1
Potri.019G028200 Populus trichocarpa HOM05D000580 ORTHO05D006815 1.1e-26 122.9 74 85.1
Lalb_Chr10g0093221 Lupinus albus HOM05D000580 ORTHO05D006815 1.5e-26 122.5 74 86.5
Lalb_Chr25g0283341 Lupinus albus HOM05D000580 ORTHO05D006815 1.5e-26 122.5 74 86.5
PGR111G0073 Punica granatum HOM05D000580 ORTHO05D006815 1.5e-26 122.5 74 85.1
Gohir.A12G178630 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.0e-26 122.1 74 83.8
Gohir.A02G100500 Gossypium hirsutum HOM05D000580 ORTHO05D006815 3.3e-26 121.3 74 83.8
Nn049s41914 Nelumbo nucifera HOM05D000580 ORTHO05D006815 3.3e-26 121.3 74 83.8
Lsat_1_v5_gn_5_67060 Lactuca sativa HOM05D000580 ORTHO05D006815 1.7e-25 119.0 74 83.8
Gorai.008G286600 Gossypium raimondii HOM05D000580 ORTHO05D006815 2.2e-25 118.6 74 81.1
BNapus_Darmor_BZH_scaffold_253p00300 Brassica napus HOM05D000580 ORTHO05D006815 3.7e-25 117.9 74 82.4
BNapus_Darmor_BZH_scaffold_57p00040 Brassica napus HOM05D000580 ORTHO05D006815 3.7e-25 117.9 74 82.4
C06p23100 Brassica napus HOM05D000580 ORTHO05D006815 3.7e-25 117.9 74 82.4
BolSC29t60604H Brassica oleracea HOM05D000580 ORTHO05D006815 3.7e-25 117.9 74 82.4
BolSC35t60664H Brassica oleracea HOM05D000580 ORTHO05D006815 3.7e-25 117.9 74 82.4
BolSC35t60735H Brassica oleracea HOM05D000580 ORTHO05D006815 3.7e-25 117.9 74 82.4
BolSC46t61015H Brassica oleracea HOM05D000580 ORTHO05D006815 3.7e-25 117.9 74 82.4
BolSC47t61080H Brassica oleracea HOM05D000580 ORTHO05D006815 3.7e-25 117.9 74 82.4
BolSC49t61168H Brassica oleracea HOM05D000580 ORTHO05D006815 3.7e-25 117.9 74 82.4
BraA06t25380Z Brassica rapa HOM05D000580 ORTHO05D006815 3.7e-25 117.9 74 82.4
BraSC138t45558Z Brassica rapa HOM05D000580 ORTHO05D006815 3.7e-25 117.9 74 82.4
BraSC58t46498Z Brassica rapa HOM05D000580 ORTHO05D006815 3.7e-25 117.9 74 82.4
BraSC59t46576Z Brassica rapa HOM05D000580 ORTHO05D006815 3.7e-25 117.9 74 82.4
Carub.0006s2561 Capsella rubella HOM05D000580 ORTHO05D006815 3.7e-25 117.9 74 82.4
Eucgr.B01572 Eucalyptus grandis HOM05D000580 ORTHO05D006815 3.7e-25 117.9 69 88.4
Gohir.A01G128325 Gossypium hirsutum HOM05D000580 ORTHO05D006815 3.7e-25 117.9 74 82.4
Gohir.A05G326916 Gossypium hirsutum HOM05D000580 ORTHO05D006815 4.8e-25 117.5 74 82.4
CiPaw.10G124800 Carya illinoinensis HOM05D000580 ORTHO05D006815 6.3e-25 117.1 74 82.4
Gohir.A13G110000 Gossypium hirsutum HOM05D000580 ORTHO05D006815 8.2e-25 116.7 74 81.1
PSO548G0006 Papaver somniferum HOM05D000580 ORTHO05D006815 8.2e-25 116.7 74 82.4
AL2G20610 Arabidopsis lyrata HOM05D000580 ORTHO05D006815 1.1e-24 116.3 74 81.1
AL2G21660 Arabidopsis lyrata HOM05D000580 ORTHO05D006815 1.1e-24 116.3 74 81.1
ATCG00710 Arabidopsis thaliana HOM05D000580 ORTHO05D006815 1.1e-24 116.3 74 81.1
CARHR282200 Cardamine hirsuta HOM05D000580 ORTHO05D006815 1.1e-24 116.3 74 81.1
Sed0004233 Sechium edule HOM05D000580 ORTHO05D006815 1.1e-24 116.3 74 82.4
Sed0008111 Sechium edule HOM05D000580 ORTHO05D006815 1.1e-24 116.3 74 82.4
Sed0015899 Sechium edule HOM05D000580 ORTHO05D006815 1.1e-24 116.3 74 82.4
Gohir.D04G149675 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.4e-24 115.2 71 81.7
Migut.H01967 Erythranthe guttata HOM05D000580 ORTHO05D006815 4.1e-24 114.4 67 86.6
Gohir.A05G286600 Gossypium hirsutum HOM05D000580 ORTHO05D006815 5.3e-24 114.0 74 83.8
Gohir.D09G103600 Gossypium hirsutum HOM05D000580 ORTHO05D006815 5.3e-24 114.0 74 78.4
LjContig00319g0006223 Lotus japonicus HOM05D000580 ORTHO05D006815 5.3e-24 114.0 74 79.7
LjContig00319g0024255 Lotus japonicus HOM05D000580 ORTHO05D006815 5.3e-24 114.0 74 79.7
Nitab4.5_0001105g0140 Nicotiana tabacum HOM05D000580 ORTHO05D006815 5.3e-24 114.0 79 75.9
Gohir.D02G147200 Gossypium hirsutum HOM05D000580 ORTHO05D006815 9.1e-24 113.2 74 79.7
C06p22890 Brassica napus HOM05D000580 ORTHO05D006815 1.2e-23 112.8 74 79.7
CAN.G2018.9 Capsicum annuum HOM05D000580 ORTHO05D006815 1.2e-23 112.8 74 82.4
Hund29679 Selenicereus undatus HOM05D000580 ORTHO05D006815 1.2e-23 112.8 75 78.7
Gorai.005G164900 Gossypium raimondii HOM05D000580 ORTHO05D006815 1.5e-23 112.5 74 79.7
Duzib026G0003 Durio zibethinus HOM05D000580 ORTHO05D001362 2.0e-23 112.1 67 83.6
Duzib124G0006 Durio zibethinus HOM05D000580 ORTHO05D001362 2.0e-23 112.1 67 83.6
Duzib237G0002 Durio zibethinus HOM05D000580 ORTHO05D001362 2.0e-23 112.1 67 83.6
Duzib252G0006 Durio zibethinus HOM05D000580 ORTHO05D001362 2.0e-23 112.1 67 83.6
Duzib256G0004 Durio zibethinus HOM05D000580 ORTHO05D001362 2.0e-23 112.1 67 83.6
RcHm_v2.0_CPg0501961 Rosa chinensis HOM05D000580 ORTHO05D006815 2.0e-23 112.1 75 80.0
Gohir.A09G103075 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.6e-23 111.7 69 82.6
Gorai.005G110300 Gossypium raimondii HOM05D000580 ORTHO05D006815 2.6e-23 111.7 67 85.1
DCAR_032514 Daucus carota HOM05D000580 ORTHO05D006815 3.4e-23 111.3 74 79.7
Lalb_Chr23g0274371 Lupinus albus HOM05D000580 ORTHO05D006815 7.7e-23 110.2 80 73.8
CARHR292710 Cardamine hirsuta HOM05D000580 ORTHO05D006815 1.0e-22 109.8 74 77.0
BolC2t08916H Brassica oleracea HOM05D000580 ORTHO05D006815 1.3e-22 109.4 70 80.0
Gohir.A05G301450 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.3e-22 109.4 74 78.4
Gohir.D02G096801 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.7e-22 109.0 67 82.1
RcHm_v2.0_Chr6g0260481 Rosa chinensis HOM05D000580 ORTHO05D006815 2.9e-22 108.2 75 77.3
Glyma.03G065000 Glycine max HOM05D000580 ORTHO05D006815 3.8e-22 107.8 74 78.4
Hma1.2p1_0149F.1_g066500 Hydrangea macrophylla HOM05D000580 ORTHO05D006815 6.5e-22 107.1 74 71.6
Medtr2g062930 Medicago truncatula HOM05D000580 ORTHO05D006815 8.5e-22 106.7 66 80.3
Potri.002G174001 Populus trichocarpa HOM05D000580 ORTHO05D006815 1.4e-21 105.9 72 77.8
RcHm_v2.0_Chr4g0390611 Rosa chinensis HOM05D000580 ORTHO05D006815 1.9e-21 105.5 75 76.0
Sed0008946 Sechium edule HOM05D000580 ORTHO05D006815 2.5e-21 105.1 74 78.4
Nitab4.5_0010531g0030 Nicotiana tabacum HOM05D000580 ORTHO05D006815 1.6e-20 102.4 74 74.3
Hund08570 Selenicereus undatus HOM05D000580 ORTHO05D006815 1.6e-20 102.4 72 76.4
HanXRQChr01g0020261 Helianthus annuus HOM05D000580 ORTHO05D001785 2.7e-20 101.7 57 87.7
HanXRQChr07g0193501 Helianthus annuus HOM05D000580 ORTHO05D006815 2.7e-20 101.7 57 87.7
HanXRQChr10g0299321 Helianthus annuus HOM05D000580 ORTHO05D001785 2.7e-20 101.7 64 79.7
HanXRQChr11g0326921 Helianthus annuus HOM05D000580 ORTHO05D001785 2.7e-20 101.7 64 79.7
Prupe.7G021700 Prunus persica HOM05D000580 ORTHO05D006815 6.1e-20 100.5 75 73.3
HanXRQChr02g0052541 Helianthus annuus HOM05D000580 ORTHO05D001785 1.4e-19 99.4 64 78.1
Glyma.17G186400 Glycine max HOM05D000580 ORTHO05D006815 5.1e-19 97.4 58 82.8
Gohir.A10G070250 Gossypium hirsutum HOM05D000580 ORTHO05D006815 8.8e-19 96.7 55 85.5
C07p15330 Brassica napus HOM05D000580 ORTHO05D006815 1.1e-18 96.3 65 72.3
Psat6g181560 Pisum sativum HOM05D000580 ORTHO05D001785 1.5e-18 95.9 80 63.8
Nitab4.5_0004376g0090 Nicotiana tabacum HOM05D000580 ORTHO05D006815 2.0e-18 95.5 59 81.4
Lsat_1_v5_gn_5_50340 Lactuca sativa HOM05D000580 ORTHO05D006815 9.7e-18 93.2 57 80.7
MELO3C033895.2 Cucumis melo HOM05D000580 ORTHO05D006815 1.7e-17 92.4 74 68.9
EL10Ac1g01194 Beta vulgaris HOM05D000580 ORTHO05D001362 2.2e-17 92.0 56 85.7
Peaxi162Scf00299g10016 Petunia axillaris HOM05D000580 ORTHO05D006815 3.7e-17 91.3 61 77.0
Psat0s7142g0160 Pisum sativum HOM05D000580 ORTHO05D001785 3.7e-17 91.3 77 63.6
Solyc00g500026.1 Solanum lycopersicum HOM05D000580 ORTHO05D006815 6.3e-17 90.5 51 86.3
Solyc00g500072.1 Solanum lycopersicum HOM05D000580 ORTHO05D006815 6.3e-17 90.5 51 86.3
Medtr4g051375 Medicago truncatula HOM05D000580 ORTHO05D006815 1.1e-16 89.7 51 82.4
Peaxi162Scf00527g00037 Petunia axillaris HOM05D000580 ORTHO05D006815 1.4e-16 89.4 51 84.3
SabraPtG0004100 Salix brachista HOM05D000580 ORTHO05D001785 2.4e-16 88.6 51 84.3
Psat7g045200 Pisum sativum HOM05D000580 ORTHO05D006815 4.1e-16 87.8 61 68.9
SabraMtG0010300 Salix brachista HOM05D000580 ORTHO05D006815 9.1e-16 86.7 50 84.0
Hund10713 Selenicereus undatus HOM05D000580 ORTHO05D001362 9.1e-16 86.7 77 63.6
Psat0s1446g0280 Pisum sativum HOM05D000580 ORTHO05D001785 1.6e-15 85.9 52 76.9
Ah.10g027360 Amaranthus hybridus HOM05D000580 ORTHO05D006815 1.5e-13 79.3 54 75.9
Ah.10g027190 Amaranthus hybridus HOM05D000580 ORTHO05D001785 3.2e-13 78.2 51 76.5
Ah.10g027480 Amaranthus hybridus HOM05D000580 ORTHO05D001785 3.2e-13 78.2 51 76.5
Ah.10g028960 Amaranthus hybridus HOM05D000580 ORTHO05D001785 9.4e-13 76.6 51 74.5
Glyma.05G092100 Glycine max HOM05D000580 ORTHO05D006815 2.7e-12 75.1 42 81.0
Lalb_Chr01g0009811 Lupinus albus HOM05D000580 ORTHO05D006815 4.7e-12 74.3 39 92.3
SMO086G0029 Selaginella moellendorffii HOM05D000580 ORTHO05D006815 6.1e-12 73.9 79 49.4
Sc07g0006580 Simmondsia chinensis HOM05D000580 ORTHO05D006815 1.4e-11 72.8 64 56.2
Solyc11g006675.1 Solanum lycopersicum HOM05D000580 ORTHO05D006815 3.0e-11 71.6 40 82.5
Sp5g12490 Schrenkiella parvula HOM05D000580 ORTHO05D006815 5.2e-11 70.9 44 77.3
LjContig00318g0018353 Lotus japonicus HOM05D000580 ORTHO05D001785 9.7e-10 66.6 43 72.1
MD04G1032200 Malus domestica HOM05D000580 ORTHO05D006815 1.3e-09 66.2 51 62.7
BolSC29t60484H Brassica oleracea HOM05D000580 ORTHO05D006815 6.3e-09 63.9 40 75.0
Migut.L00683 Erythranthe guttata HOM05D000580 ORTHO05D006815 2.4e-08 62.0 45 66.7
QL93p1043_0018 Quercus lobata HOM05D000580 ORTHO05D001785 4.1e-08 61.2 34 85.3
ClCG02G007580 Citrullus lanatus HOM05D000580 ORTHO05D006815 1.6e-07 59.3 36 77.8
BolSC46t61022H Brassica oleracea HOM05D000580 ORTHO05D006815 4.5e-07 57.8 37 73.0
Lalb_Chr23g0274191 Lupinus albus HOM05D000580 ORTHO05D006815 1.7e-06 55.8 38 71.1
EL10As4g23447 Beta vulgaris HOM05D000580 ORTHO05D006815 2.9e-06 55.1 36 72.2
RcHm_v2.0_Chr2g0140191 Rosa chinensis HOM05D000580 ORTHO05D006815 3.8e-06 54.7 43 65.1


User provided reference genes

Program Settings