Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G29.14 Capsicum annuum HOM05D000104 ORTHO05D006397 1.8e-257 892.1 466 100.0
Solyc04g050150.4 Solanum lycopersicum HOM05D000104 ORTHO05D006397 4.7e-189 664.8 435 80.5
Sopen04g020860 Solanum pennellii HOM05D000104 ORTHO05D006397 4.7e-189 664.8 435 80.5
Nitab4.5_0000061g0050 Nicotiana tabacum HOM05D000104 ORTHO05D006397 7.0e-185 651.0 445 77.3
Peaxi162Scf00373g01415 Petunia axillaris HOM05D000104 ORTHO05D006397 1.3e-175 620.2 438 77.2
Nitab4.5_0002088g0030 Nicotiana tabacum HOM05D000104 ORTHO05D006397 2.9e-154 549.3 435 68.7
Lj2C45G10 Lonicera japonica HOM05D000104 ORTHO05D006397 3.6e-88 329.7 512 44.9
CiPaw.08G118700 Carya illinoinensis HOM05D000104 ORTHO05D006397 4.0e-87 326.2 464 45.7
Potri.013G048500 Populus trichocarpa HOM05D000104 ORTHO05D006397 1.6e-83 314.3 453 45.3
TAR362G0360 Trochodendron aralioides HOM05D000104 ORTHO05D006397 2.0e-83 313.9 494 42.9
GSVIVG01023393001 Vitis vinifera HOM05D000104 ORTHO05D006397 2.0e-83 313.9 486 43.8
Cc09_g02930 Coffea canephora HOM05D000104 ORTHO05D006397 2.9e-82 310.1 452 42.9
TWI60G0140 Tripterygium wilfordii HOM05D000104 ORTHO05D006397 3.8e-82 309.7 467 45.6
MD04G1232200 Malus domestica HOM05D000104 ORTHO05D006397 1.5e-81 307.8 445 44.9
Sabra13G0044700 Salix brachista HOM05D000104 ORTHO05D006397 3.3e-81 306.6 456 45.0
CSS0004215 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006397 7.3e-81 305.4 450 47.1
Actinidia34760 Actinidia chinensis HOM05D000104 ORTHO05D006397 9.5e-81 305.1 452 46.2
Atru.chr2.1068 Acer truncatum HOM05D000104 ORTHO05D006397 1.2e-80 304.7 473 43.6
CsaV3_2G009970 Cucumis sativus L. HOM05D000104 ORTHO05D006397 4.7e-80 302.8 470 44.0
MELO3C008639.2 Cucumis melo HOM05D000104 ORTHO05D006397 1.4e-79 301.2 469 44.3
Potri.019G021500 Populus trichocarpa HOM05D000104 ORTHO05D006397 2.3e-79 300.4 453 44.8
CANSAT54G2768 Cannabis sativa HOM05D000104 ORTHO05D006397 6.8e-79 298.9 441 44.4
QL03p029602 Quercus lobata HOM05D000104 ORTHO05D006397 1.2e-78 298.1 483 44.1
Manes.09G147000 Manihot esculenta HOM05D000104 ORTHO05D006397 3.4e-78 296.6 449 45.7
FAN05G2560 Fragaria x ananassa HOM05D000104 ORTHO05D006397 1.3e-77 294.7 444 40.8
Aqoxy5G00143 Aquilegia oxysepala HOM05D000104 ORTHO05D006397 2.9e-77 293.5 477 41.3
Prupe.6G351600 Prunus persica HOM05D000104 ORTHO05D006397 8.3e-77 292.0 467 41.5
FvH4_6g01581 Fragaria vesca HOM05D000104 ORTHO05D006397 3.2e-76 290.0 444 40.3
FAN05G1722 Fragaria x ananassa HOM05D000104 ORTHO05D006397 4.1e-76 289.7 452 40.3
FAN14G4089 Fragaria x ananassa HOM05D000104 ORTHO05D006397 4.1e-76 289.7 445 40.7
MD00G1149200 Malus domestica HOM05D000104 ORTHO05D006397 9.2e-76 288.5 438 44.3
Ciclev10030509m.g Citrus clementina HOM05D000104 ORTHO05D006397 1.6e-75 287.7 451 42.6
RcHm_v2.0_Chr3g0449401 Rosa chinensis HOM05D000104 ORTHO05D006397 1.6e-75 287.7 456 42.1
ClCG11G010390 Citrullus lanatus HOM05D000104 ORTHO05D006397 3.5e-75 286.6 445 43.4
COL.COLO4_15520 Corchorus olitorius HOM05D000104 ORTHO05D006397 3.5e-75 286.6 452 42.7
Duzib128G0174 Durio zibethinus HOM05D000104 ORTHO05D006397 4.6e-75 286.2 460 42.8
FAN09G4154 Fragaria x ananassa HOM05D000104 ORTHO05D006397 5.9e-75 285.8 442 40.7
FAN14G5045 Fragaria x ananassa HOM05D000104 ORTHO05D006397 1.0e-74 285.0 452 39.8
Gohir.D11G255300 Gossypium hirsutum HOM05D000104 ORTHO05D006397 1.0e-74 285.0 461 43.4
Phvul.L001951 Phaseolus vulgaris HOM05D000104 ORTHO05D006397 1.7e-74 284.3 478 43.1
Eucgr.H04218 Eucalyptus grandis HOM05D000104 ORTHO05D006397 2.3e-74 283.9 444 43.7
Gohir.A11G245400 Gossypium hirsutum HOM05D000104 ORTHO05D006397 2.3e-74 283.9 461 44.0
Sabra19G0033000 Salix brachista HOM05D000104 ORTHO05D006397 2.3e-74 283.9 459 42.5
Gorai.007G273900 Gossypium raimondii HOM05D000104 ORTHO05D006397 3.0e-74 283.5 461 43.2
Sc09g0001860 Simmondsia chinensis HOM05D000104 ORTHO05D006397 3.0e-74 283.5 436 42.7
Lalb_Chr06g0168221 Lupinus albus HOM05D000104 ORTHO05D006397 5.0e-74 282.7 463 42.8
PSO764G0152 Papaver somniferum HOM05D000104 ORTHO05D006397 5.0e-74 282.7 459 42.5
Glyma.20G227200 Glycine max HOM05D000104 ORTHO05D006397 1.5e-73 281.2 480 42.7
FAN02G0967 Fragaria x ananassa HOM05D000104 ORTHO05D006397 1.9e-73 280.8 442 40.7
Thecc.05G267600 Theobroma cacao HOM05D000104 ORTHO05D006397 4.3e-73 279.6 459 41.4
arahy.Tifrunner.gnm1.ann1.21AGFE Arachis hypogaea HOM05D000104 ORTHO05D006397 9.5e-73 278.5 450 43.8
Haze_04401 Corylus avellana HOM05D000104 ORTHO05D006397 1.2e-72 278.1 428 41.8
Glyma.10G165000 Glycine max HOM05D000104 ORTHO05D006397 2.1e-72 277.3 472 43.0
HanXRQChr11g0327241 Helianthus annuus HOM05D000104 ORTHO05D006397 2.1e-72 277.3 441 43.3
Nn1g02977 Nelumbo nucifera HOM05D000104 ORTHO05D006397 2.8e-72 276.9 445 42.5
arahy.Tifrunner.gnm1.ann1.N8MZL6 Arachis hypogaea HOM05D000104 ORTHO05D006397 3.6e-72 276.6 450 43.3
ECA238G2794 Erigeron canadensis HOM05D000104 ORTHO05D006397 3.1e-71 273.5 442 45.2
EL10Ac4g09754 Beta vulgaris HOM05D000104 ORTHO05D006397 1.2e-70 271.6 420 44.8
PGR004G1676 Punica granatum HOM05D000104 ORTHO05D006397 1.5e-70 271.2 441 39.9
Lsat_1_v5_gn_2_15881 Lactuca sativa HOM05D000104 ORTHO05D006397 2.0e-70 270.8 442 45.2
Sed0024552 Sechium edule HOM05D000104 ORTHO05D006397 2.6e-70 270.4 310 51.9
VMungo0720G2029 Vigna mungo HOM05D000104 ORTHO05D006397 9.8e-70 268.5 485 40.6
Hma1.2p1_1336F.1_g276420 Hydrangea macrophylla HOM05D000104 ORTHO05D006397 3.7e-69 266.5 240 60.8
Ah.02g118350 Amaranthus hybridus HOM05D000104 ORTHO05D006397 3.2e-68 263.5 440 42.5
DCAR_028378 Daucus carota HOM05D000104 ORTHO05D006397 6.6e-66 255.8 419 43.0
THA.LOC104805785 Tarenaya hassleriana HOM05D000104 ORTHO05D006397 6.6e-66 255.8 443 42.2
Ca_10025_v3 Cicer arietinum L. HOM05D000104 ORTHO05D006397 4.3e-65 253.1 471 42.0
CDE02G4509 Ceratophyllum demersum HOM05D000104 ORTHO05D006397 7.3e-65 252.3 476 37.4
ATR0787G043 Amborella trichopoda HOM05D000104 ORTHO05D006397 4.4e-62 243.0 445 36.9
Sp1g07260 Schrenkiella parvula HOM05D000104 ORTHO05D006397 7.8e-59 232.3 443 38.8
Rhsim09G0133300 Rhododendron simsii HOM05D000104 ORTHO05D006397 3.0e-58 230.3 454 39.6
Hma1.2p1_1336F.1_g276430 Hydrangea macrophylla HOM05D000104 ORTHO05D006397 8.6e-58 228.8 202 63.4
HPP92_015192 Vanilla planifolia HOM05D000104 ORTHO05D006397 1.5e-57 228.0 449 37.9
AT1G08600 Arabidopsis thaliana HOM05D000104 ORTHO05D006397 3.3e-57 226.9 451 37.9
Aa31sc449G60 Aethionema arabicum HOM05D000104 ORTHO05D006397 1.2e-56 224.9 442 39.6
AL1G19030 Arabidopsis lyrata HOM05D000104 ORTHO05D006397 4.7e-56 223.0 444 38.5
Carub.0001s0796 Capsella rubella HOM05D000104 ORTHO05D006397 4.7e-56 223.0 450 38.9
A06p05580 Brassica napus HOM05D000329 ORTHO05D006397 2.6e-54 217.2 457 37.6
BraA06t23766Z Brassica rapa HOM05D000329 ORTHO05D006397 2.9e-53 213.8 458 37.6
CARHR008510 Cardamine hirsuta HOM05D000104 ORTHO05D006397 1.4e-52 211.5 435 37.9
C05p06690 Brassica napus HOM05D000104 ORTHO05D006397 1.9e-52 211.1 457 37.6
BcaB07g34102 Brassica carinata HOM05D000104 ORTHO05D006397 2.4e-52 210.7 457 37.4
BolC5t29429H Brassica oleracea HOM05D000104 ORTHO05D006397 1.2e-51 208.4 458 37.6
Thhalv10006555m.g Eutrema salsugineum HOM05D000104 ORTHO05D006397 1.2e-51 208.4 455 36.9
Zm00001eb046650 Zea mays HOM05D000104 ORTHO05D006397 1.6e-48 198.0 443 34.3
vmacro10381 Vaccinium macrocarpon HOM05D000104 ORTHO05D006397 1.5e-46 191.4 435 35.2
Actinidia38932 Actinidia chinensis HOM05D000104 ORTHO05D006397 1.1e-44 185.3 175 62.9
Os10g0457700 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D006397 3.2e-44 183.7 443 32.7
Dinv12942 Davidia involucrata HOM05D000104 ORTHO05D006397 4.8e-40 169.9 436 36.9
Hund07179 Selenicereus undatus HOM05D000104 ORTHO05D006397 1.6e-35 154.8 454 33.0
SMO115G0122 Selaginella moellendorffii HOM05D000104 ORTHO05D006397 1.3e-32 145.2 358 33.5
Lj5g0000218 Lotus japonicus HOM05D000104 ORTHO05D006397 6.9e-31 139.4 445 34.4
SalBow1G3403 Salvia bowleyana HOM05D000104 ORTHO05D006397 1.2e-30 138.7 140 63.6
Migut.F02058 Erythranthe guttata HOM05D000104 ORTHO05D006397 3.2e-28 130.6 441 32.0
Medtr1g080420 Medicago truncatula HOM05D000104 ORTHO05D006397 3.2e-28 130.6 105 69.5
Pp3c14_22150 Physcomitrium patens HOM05D000104 ORTHO05D006397 7.1e-28 129.4 258 35.3
Cpa.g.sc51.11 Carica papaya HOM05D000104 ORTHO05D006397 2.7e-27 127.5 108 65.7
unitig_37.g12285 Utricularia gibba HOM05D000104 ORTHO05D006397 2.7e-27 127.5 97 70.1
TPR.G26620 Trifolium pratense HOM05D000104 ORTHO05D006397 2.5e-25 120.9 440 34.5
Psat6g144360 Pisum sativum HOM05D000104 ORTHO05D006397 3.7e-24 117.1 97 67.0
MSTRG.27435 Avicennia marina HOM05D000104 ORTHO05D006397 4.8e-24 116.7 450 30.4
Migut.F01812 Erythranthe guttata HOM05D000104 ORTHO05D006397 3.4e-22 110.5 100 60.0
Actinidia38931 Actinidia chinensis HOM05D000104 ORTHO05D006397 1.4e-20 105.1 246 35.8
FAN15G0988 Fragaria x ananassa HOM05D000104 ORTHO05D019205 2.3e-18 97.8 241 33.2
SGA_v2.0_scaffold62G21465 Striga asiatica HOM05D000104 ORTHO05D006397 4.3e-17 93.6 74 66.2
AagrBONN_evm.TU.Sc2ySwM_344.2543 Anthoceros agrestis HOM05D000104 ORTHO05D006397 1.3e-16 92.0 246 30.5
AUR62006982 Chenopodium quinoa HOM05D000104 ORTHO05D006397 9.0e-15 85.9 413 25.9
AUR62000629 Chenopodium quinoa HOM05D000104 ORTHO05D006397 1.2e-14 85.5 77 62.3
Mapoly0058s0081 Marchantia polymorpha HOM05D000104 ORTHO05D006397 3.8e-13 80.5 256 30.1
SHI15631 Sapria himalayana HOM05D000725 ORTHO05D006397 1.3e-08 65.5 62 51.6
BcaC07g41935 Brassica carinata HOM05D000104 ORTHO05D006397 3.1e-07 60.8 41 73.2


User provided reference genes

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