Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G212.5 Capsicum annuum HOM05D001717 ORTHO05D022168 2.4e-49 198.7 118 100.0
CAN.G366.3 Capsicum annuum HOM05D001717 ORTHO05D022168 3.5e-24 115.2 62 88.7
Peaxi162Scf00498g00430 Petunia axillaris HOM05D001717 ORTHO05D007217 2.5e-22 109.0 61 83.6
Nitab4.5_0002642g0140 Nicotiana tabacum HOM05D001717 ORTHO05D007217 4.3e-22 108.2 61 83.6
Nitab4.5_0002824g0130 Nicotiana tabacum HOM05D001717 ORTHO05D007217 4.3e-22 108.2 61 83.6
CAN.G1583.7 Capsicum annuum HOM05D001717 ORTHO05D007217 1.3e-21 106.7 61 82.0
Solyc12g008980.3 Solanum lycopersicum HOM05D001717 ORTHO05D007217 1.3e-21 106.7 61 82.0
PGSC0003DMG400000333 Solanum tuberosum HOM05D001717 ORTHO05D007217 1.3e-21 106.7 61 82.0
Sopen12g003910 Solanum pennellii HOM05D001717 ORTHO05D007217 1.6e-21 106.3 61 82.0
CAN.G113.4 Capsicum annuum HOM05D001717 ORTHO05D000034 3.4e-19 98.6 61 73.8
GSVIVG01015169001 Vitis vinifera HOM05D001717 ORTHO05D007217 9.9e-19 97.1 60 73.3
Glyma.09G066200 Glycine max HOM05D001717 ORTHO05D007217 1.3e-18 96.7 60 73.3
Glyma.15G172200 Glycine max HOM05D001717 ORTHO05D007217 1.3e-18 96.7 60 73.3
Rhsim03G0231100 Rhododendron simsii HOM05D001717 ORTHO05D007217 1.3e-18 96.7 60 75.0
Actinidia38458 Actinidia chinensis HOM05D001717 ORTHO05D007217 1.7e-18 96.3 65 69.2
Cc06_g11680 Coffea canephora HOM05D001717 ORTHO05D007217 2.2e-18 95.9 61 73.8
Dinv36788 Davidia involucrata HOM05D001717 ORTHO05D007217 2.2e-18 95.9 60 75.0
Lalb_Chr08g0232411 Lupinus albus HOM05D001717 ORTHO05D007217 2.2e-18 95.9 65 67.7
Potri.006G147300 Populus trichocarpa HOM05D001717 ORTHO05D007217 2.2e-18 95.9 64 70.3
Phvul.009G230300 Phaseolus vulgaris HOM05D001717 ORTHO05D007217 2.9e-18 95.5 60 73.3
Psat1g140400 Pisum sativum HOM05D001717 ORTHO05D007217 2.9e-18 95.5 65 69.2
VMungo1309G2997 Vigna mungo HOM05D001717 ORTHO05D007217 2.9e-18 95.5 65 67.7
Nn8g38788 Nelumbo nucifera HOM05D001717 ORTHO05D007217 3.8e-18 95.1 53 83.0
Actinidia29912 Actinidia chinensis HOM05D001717 ORTHO05D007217 4.9e-18 94.7 64 68.8
Lj6g0021332 Lotus japonicus HOM05D001717 ORTHO05D007217 4.9e-18 94.7 60 70.0
vmacro06304 Vaccinium macrocarpon HOM05D001717 ORTHO05D007217 4.9e-18 94.7 60 71.7
CANSAT37G0002 Cannabis sativa HOM05D001717 ORTHO05D007217 6.4e-18 94.4 65 66.2
Duzib187G0409 Durio zibethinus HOM05D001717 ORTHO05D007217 6.4e-18 94.4 57 78.9
Gohir.A05G031300 Gossypium hirsutum HOM05D001717 ORTHO05D007217 6.4e-18 94.4 58 75.9
Gorai.009G032900 Gossypium raimondii HOM05D001717 ORTHO05D007217 6.4e-18 94.4 58 75.9
Sabra06G0116300 Salix brachista HOM05D001717 ORTHO05D007217 6.4e-18 94.4 64 68.8
Thecc.09G084800 Theobroma cacao HOM05D001717 ORTHO05D007217 6.4e-18 94.4 57 78.9
Cpa.g.sc28.134 Carica papaya HOM05D001717 ORTHO05D007217 8.4e-18 94.0 61 72.1
Gohir.D05G032700 Gossypium hirsutum HOM05D001717 ORTHO05D007217 8.4e-18 94.0 58 75.9
Lj4A290G39 Lonicera japonica HOM05D001717 ORTHO05D007217 8.4e-18 94.0 60 73.3
unitig_899.g15176 Utricularia gibba HOM05D001717 ORTHO05D007217 8.4e-18 94.0 64 67.2
Aqoxy7G01155 Aquilegia oxysepala HOM05D001717 ORTHO05D007217 1.1e-17 93.6 61 70.5
arahy.Tifrunner.gnm1.ann1.1PI95V Arachis hypogaea HOM05D001717 ORTHO05D007217 1.1e-17 93.6 65 66.2
arahy.Tifrunner.gnm1.ann1.HJX0E8 Arachis hypogaea HOM05D001717 ORTHO05D007217 1.1e-17 93.6 65 66.2
MELO3C004633.2 Cucumis melo HOM05D001717 ORTHO05D007217 1.1e-17 93.6 61 70.5
TPR.G29491 Trifolium pratense HOM05D001717 ORTHO05D007217 1.1e-17 93.6 66 65.2
TWI34G1733 Tripterygium wilfordii HOM05D001717 ORTHO05D007217 1.1e-17 93.6 62 71.0
Atru.chr7.1632 Acer truncatum HOM05D001717 ORTHO05D007217 1.4e-17 93.2 56 75.0
SalBow1G4112 Salvia bowleyana HOM05D001717 ORTHO05D007217 1.4e-17 93.2 60 70.0
TAR626G1800 Trochodendron aralioides HOM05D001717 ORTHO05D007217 1.4e-17 93.2 60 71.7
DCAR_028276 Daucus carota HOM05D001717 ORTHO05D007217 1.9e-17 92.8 53 81.1
ECA240G2539 Erigeron canadensis HOM05D001717 ORTHO05D007217 1.9e-17 92.8 61 72.1
Hma1.2p1_0672F.1_g200970 Hydrangea macrophylla HOM05D001717 ORTHO05D007217 1.9e-17 92.8 60 71.7
CiPaw.04G147700 Carya illinoinensis HOM05D001717 ORTHO05D007217 2.4e-17 92.4 56 75.0
ClCG11G001670 Citrullus lanatus HOM05D001717 ORTHO05D007217 2.4e-17 92.4 61 70.5
CsaV3_2G001370 Cucumis sativus L. HOM05D001717 ORTHO05D007217 2.4e-17 92.4 61 70.5
Lsat_1_v5_gn_7_34600 Lactuca sativa HOM05D001717 ORTHO05D007217 2.4e-17 92.4 61 67.2
QL02p062060 Quercus lobata HOM05D001717 ORTHO05D007217 2.4e-17 92.4 60 71.7
Prupe.7G205600 Prunus persica HOM05D001717 ORTHO05D007217 3.2e-17 92.0 61 68.9
MSTRG.26445 Avicennia marina HOM05D001717 ORTHO05D007217 4.2e-17 91.7 53 79.2
HanXRQChr03g0060261 Helianthus annuus HOM05D001717 ORTHO05D007217 4.2e-17 91.7 61 70.5
Medtr2g040060 Medicago truncatula HOM05D001717 ORTHO05D007217 4.2e-17 91.7 66 63.6
Oeu051301.2 Olea europaea HOM05D001717 ORTHO05D007217 4.2e-17 91.7 60 70.0
THA.LOC104811752 Tarenaya hassleriana HOM05D001717 ORTHO05D007217 4.2e-17 91.7 66 65.2
AUR62029030 Chenopodium quinoa HOM05D001717 ORTHO05D007217 5.4e-17 91.3 61 68.9
AUR62033926 Chenopodium quinoa HOM05D001717 ORTHO05D007217 5.4e-17 91.3 61 68.9
Ciclev10008410m.g Citrus clementina HOM05D001717 ORTHO05D007217 5.4e-17 91.3 61 68.9
Dinv42343 Davidia involucrata HOM05D001717 ORTHO05D007217 5.4e-17 91.3 53 79.2
Migut.L01523 Erythranthe guttata HOM05D001717 ORTHO05D007217 5.4e-17 91.3 53 77.4
Haze_25942 Corylus avellana HOM05D001717 ORTHO05D007217 7.1e-17 90.9 60 70.0
Manes.16G099600 Manihot esculenta HOM05D001717 ORTHO05D007217 7.1e-17 90.9 56 75.0
SGA_v2.0_scaffold21G09418 Striga asiatica HOM05D001717 ORTHO05D007217 7.1e-17 90.9 60 66.7
COL.COLO4_18171 Corchorus olitorius HOM05D001717 ORTHO05D007217 9.3e-17 90.5 53 79.2
PGR044G0216 Punica granatum HOM05D001717 ORTHO05D007217 9.3e-17 90.5 65 66.2
Eucgr.C03415 Eucalyptus grandis HOM05D001717 ORTHO05D007217 1.2e-16 90.1 53 77.4
Cfa003054 Carpinus fangiana HOM05D001717 ORTHO05D007217 1.6e-16 89.7 60 68.3
Thhalv10013234m.g Eutrema salsugineum HOM05D001717 ORTHO05D007217 1.6e-16 89.7 87 54.0
MD02G1083500 Malus domestica HOM05D001717 ORTHO05D007217 1.6e-16 89.7 65 61.5
CARHR270780 Cardamine hirsuta HOM05D001717 ORTHO05D007217 2.7e-16 89.0 61 68.9
Aa31LG3G12920 Aethionema arabicum HOM05D001717 ORTHO05D007217 3.5e-16 88.6 61 67.2
Sed0013443 Sechium edule HOM05D001717 ORTHO05D007217 3.5e-16 88.6 53 75.5
Ah.09g228040 Amaranthus hybridus HOM05D001717 ORTHO05D007217 4.6e-16 88.2 61 65.6
ATR0716G023 Amborella trichopoda HOM05D001717 ORTHO05D007217 4.6e-16 88.2 64 64.1
CDE05G1519 Ceratophyllum demersum HOM05D001717 ORTHO05D007217 4.6e-16 88.2 54 72.2
PSO063G2279 Papaver somniferum HOM05D001717 ORTHO05D007217 4.6e-16 88.2 56 69.6
BcaB01g04439 Brassica carinata HOM05D001717 ORTHO05D007217 6.0e-16 87.8 66 63.6
A03p13030 Brassica napus HOM05D001717 ORTHO05D007217 6.0e-16 87.8 66 63.6
BraA03t10613Z Brassica rapa HOM05D001717 ORTHO05D007217 6.0e-16 87.8 66 63.6
Gohir.A07G012400 Gossypium hirsutum HOM05D001717 ORTHO05D007217 7.9e-16 87.4 57 68.4
Carub.0008s1753 Capsella rubella HOM05D001717 ORTHO05D007217 1.0e-15 87.0 61 67.2
BcaB05g22312 Brassica carinata HOM05D001717 ORTHO05D007217 1.3e-15 86.7 58 70.7
BcaC01g06460 Brassica carinata HOM05D001717 ORTHO05D007217 1.3e-15 86.7 58 70.7
C03p15210 Brassica napus HOM05D001717 ORTHO05D007217 1.3e-15 86.7 58 70.7
Sc18g0002290 Simmondsia chinensis HOM05D001717 ORTHO05D007217 1.3e-15 86.7 66 63.6
BcaB08g36016 Brassica carinata HOM05D001717 ORTHO05D007217 1.8e-15 86.3 66 62.1
BolC3t13962H Brassica oleracea HOM05D001717 ORTHO05D007217 1.8e-15 86.3 58 69.0
Ca_13129_v3 Cicer arietinum L. HOM05D001717 ORTHO05D007217 1.8e-15 86.3 64 60.9
Gorai.001G012900 Gossypium raimondii HOM05D001717 ORTHO05D007217 1.8e-15 86.3 57 68.4
Os01g0581300 Oryza sativa ssp. japonica HOM05D001717 ORTHO05D007217 1.8e-15 86.3 53 73.6
Zm00001eb357090 Zea mays HOM05D001717 ORTHO05D007217 1.8e-15 86.3 53 73.6
AL8G32930 Arabidopsis lyrata HOM05D001717 ORTHO05D007217 2.3e-15 85.9 66 62.1
AT5G57030 Arabidopsis thaliana HOM05D001717 ORTHO05D007217 2.3e-15 85.9 66 62.1
Hund08694 Selenicereus undatus HOM05D001717 ORTHO05D007217 2.3e-15 85.9 61 63.9
FvH4_1g07950 Fragaria vesca HOM05D001717 ORTHO05D007217 3.0e-15 85.5 53 73.6
FAN19G0647 Fragaria x ananassa HOM05D001717 ORTHO05D007217 3.0e-15 85.5 53 73.6
FAN23G2221 Fragaria x ananassa HOM05D001717 ORTHO05D007217 3.0e-15 85.5 53 73.6
FAN26G2680 Fragaria x ananassa HOM05D001717 ORTHO05D007217 3.0e-15 85.5 53 73.6
FAN28G1754 Fragaria x ananassa HOM05D001717 ORTHO05D007217 3.0e-15 85.5 53 73.6
RcHm_v2.0_Chr2g0093831 Rosa chinensis HOM05D001717 ORTHO05D007217 3.0e-15 85.5 53 73.6
Sp6g18740 Schrenkiella parvula HOM05D001717 ORTHO05D007217 3.0e-15 85.5 66 62.1
A10p14350 Brassica napus HOM05D001717 ORTHO05D007217 8.7e-15 84.0 53 71.7
BraA10t43526Z Brassica rapa HOM05D001717 ORTHO05D007217 8.7e-15 84.0 53 71.7
BolC9t57717H Brassica oleracea HOM05D001717 ORTHO05D007217 1.9e-14 82.8 61 62.3
BcaC04g20021 Brassica carinata HOM05D001717 ORTHO05D007217 4.3e-14 81.6 53 69.8
C09p48690 Brassica napus HOM05D001717 ORTHO05D007217 4.3e-14 81.6 53 69.8
Gohir.D07G012200 Gossypium hirsutum HOM05D001717 ORTHO05D007217 5.6e-14 81.3 57 66.7
AagrBONN_evm.TU.Sc2ySwM_117.346 Anthoceros agrestis HOM05D001717 ORTHO05D007217 1.3e-13 80.1 54 64.8
SEGI_30255 Sequoiadendron giganteum HOM05D001717 ORTHO05D007217 2.8e-13 79.0 53 67.9
Pp3c11_14590 Physcomitrium patens HOM05D001717 ORTHO05D007217 1.8e-12 76.3 53 62.3
FAN26G1636 Fragaria x ananassa HOM05D001717 ORTHO05D007217 3.1e-12 75.5 67 56.7
Pp3c7_15320 Physcomitrium patens HOM05D001717 ORTHO05D007217 9.0e-12 73.9 53 64.2
Mapoly0057s0089 Marchantia polymorpha HOM05D001717 ORTHO05D007217 2.0e-11 72.8 58 58.6
SMO143G0184 Selaginella moellendorffii HOM05D001717 ORTHO05D007217 4.5e-11 71.6 63 58.7
BcaB08g36018 Brassica carinata HOM05D001717 ORTHO05D007217 8.4e-10 67.4 45 64.4
BcaB08g36021 Brassica carinata HOM05D001717 ORTHO05D007217 8.4e-10 67.4 45 64.4
BcaB08g36024 Brassica carinata HOM05D001717 ORTHO05D007217 8.4e-10 67.4 45 64.4
CBR_g31296 Chara braunii HOM05D001717 ORTHO05D007217 4.2e-09 65.1 53 56.6
CAN.G276.10 Capsicum annuum HOM05D001717 ORTHO05D007217 5.5e-09 64.7 36 86.1
CSS0031227 Camellia sinensis var. sinensis HOM05D001717 ORTHO05D007217 1.3e-07 60.1 39 74.4
PSO832G4340 Papaver somniferum HOM05D001717 ORTHO05D007217 2.3e-07 59.3 40 70.0
Rhsim01G0069900 Rhododendron simsii HOM05D001717 ORTHO05D339596 1.1e-06 57.0 35 74.3
Rhsim01G0079800 Rhododendron simsii HOM05D001717 ORTHO05D022168 1.1e-06 57.0 35 74.3
Rhsim01G0085400 Rhododendron simsii HOM05D052573 ORTHO05D022168 1.1e-06 57.0 35 74.3
Cre06.g267600 Chlamydomonas reinhardtii HOM05D001717 ORTHO05D007217 9.6e-06 53.9 59 45.8
Rhsim01G0087800 Rhododendron simsii HOM05D001717 ORTHO05D022168 9.6e-06 53.9 35 71.4


User provided reference genes

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