Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G195.25 Capsicum annuum HOM05D000104 ORTHO05D004363 3.1e-94 348.6 192 100.0
Solyc08g074520.2 Solanum lycopersicum HOM05D000104 ORTHO05D004363 1.4e-67 260.0 139 96.4
Sopen08g023150 Solanum pennellii HOM05D000104 ORTHO05D004363 1.4e-67 260.0 139 96.4
Nitab4.5_0002482g0010 Nicotiana tabacum HOM05D000104 ORTHO05D004363 6.0e-66 254.6 139 95.0
Peaxi162Scf00213g01732 Petunia axillaris HOM05D000104 ORTHO05D004363 3.4e-53 212.2 121 90.1
Manes.08G155800 Manihot esculenta HOM05D000104 ORTHO05D004363 1.7e-52 209.9 140 79.3
Thecc.05G236400 Theobroma cacao HOM05D000104 ORTHO05D004363 1.7e-52 209.9 140 78.6
Duzib128G0660 Durio zibethinus HOM05D000104 ORTHO05D004363 8.5e-52 207.6 140 78.6
Lalb_Chr01g0000141 Lupinus albus HOM05D000104 ORTHO05D004363 8.5e-52 207.6 136 80.1
Migut.A00510 Erythranthe guttata HOM05D000104 ORTHO05D004363 1.1e-51 207.2 137 78.1
TWI32G0549 Tripterygium wilfordii HOM05D000104 ORTHO05D004363 1.4e-51 206.8 140 74.3
TPR.G31923 Trifolium pratense HOM05D000104 ORTHO05D004363 1.9e-51 206.5 136 80.1
CSS0023365 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004363 3.2e-51 205.7 137 81.0
Medtr4g035100 Medicago truncatula HOM05D000104 ORTHO05D004363 3.2e-51 205.7 136 79.4
Psat7g148080 Pisum sativum HOM05D000104 ORTHO05D004363 3.2e-51 205.7 136 80.1
MSTRG.11830 Avicennia marina HOM05D000104 ORTHO05D004363 4.2e-51 205.3 137 77.4
Ca_19676_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004363 5.5e-51 204.9 136 80.1
Prupe.6G000100 Prunus persica HOM05D000104 ORTHO05D004363 5.5e-51 204.9 136 77.9
Atru.chr2.1616 Acer truncatum HOM05D000104 ORTHO05D004363 9.4e-51 204.1 137 78.8
COL.COLO4_33474 Corchorus olitorius HOM05D000104 ORTHO05D004363 9.4e-51 204.1 140 78.6
Ciclev10030472m.g Citrus clementina HOM05D000104 ORTHO05D004363 1.2e-50 203.8 137 80.3
SGA_v2.0_scaffold447G51747 Striga asiatica HOM05D000104 ORTHO05D004363 1.2e-50 203.8 137 76.6
VMungo1127G2256 Vigna mungo HOM05D000104 ORTHO05D004363 1.2e-50 203.8 136 78.7
Duzib177G0255 Durio zibethinus HOM05D000104 ORTHO05D004363 2.7e-50 202.6 140 77.1
arahy.Tifrunner.gnm1.ann1.YM0GIL Arachis hypogaea HOM05D000104 ORTHO05D004363 4.7e-50 201.8 136 78.7
Lj3g0018732 Lotus japonicus HOM05D000104 ORTHO05D004363 6.1e-50 201.4 136 78.7
SGA_v2.0_scaffold269G46291 Striga asiatica HOM05D000104 ORTHO05D004363 6.1e-50 201.4 140 74.3
Glyma.12G002300 Glycine max HOM05D000104 ORTHO05D004363 7.9e-50 201.1 136 77.2
PGR083G0814 Punica granatum HOM05D000104 ORTHO05D004363 1.8e-49 199.9 140 72.9
Phvul.011G002900 Phaseolus vulgaris HOM05D000104 ORTHO05D004363 2.3e-49 199.5 136 76.5
Potri.013G068400 Populus trichocarpa HOM05D000104 ORTHO05D004363 2.3e-49 199.5 140 76.4
Oeu007492.1 Olea europaea HOM05D000104 ORTHO05D004363 3.0e-49 199.1 137 77.4
SalBow4G3014 Salvia bowleyana HOM05D000104 ORTHO05D004363 3.9e-49 198.7 137 76.6
RcHm_v2.0_Chr5g0084181 Rosa chinensis HOM05D000104 ORTHO05D004363 5.1e-49 198.4 139 74.8
Cc11_g04400 Coffea canephora HOM05D000104 ORTHO05D004363 6.7e-49 198.0 143 74.1
Gorai.013G197700 Gossypium raimondii HOM05D000104 ORTHO05D004363 6.7e-49 198.0 140 75.0
Gohir.A13G159800 Gossypium hirsutum HOM05D000104 ORTHO05D004363 8.8e-49 197.6 140 74.3
SGA_v2.0_scaffold27G11711 Striga asiatica HOM05D000104 ORTHO05D004363 8.8e-49 197.6 136 76.5
arahy.Tifrunner.gnm1.ann1.64GWQS Arachis hypogaea HOM05D000104 ORTHO05D004363 2.0e-48 196.4 136 77.2
Glyma.09G234400 Glycine max HOM05D000104 ORTHO05D004363 2.0e-48 196.4 136 75.7
FvH4_3g46101 Fragaria vesca HOM05D000104 ORTHO05D004363 2.6e-48 196.1 139 74.1
Hma1.2p1_0268F.1_g107680 Hydrangea macrophylla HOM05D000104 ORTHO05D004363 3.3e-48 195.7 141 73.8
Dinv09441 Davidia involucrata HOM05D000104 ORTHO05D004363 4.4e-48 195.3 137 77.4
Gohir.D13G165000 Gossypium hirsutum HOM05D000104 ORTHO05D004363 4.4e-48 195.3 140 74.3
Actinidia03314 Actinidia chinensis HOM05D000104 ORTHO05D004363 5.7e-48 194.9 136 77.2
Dinv37465 Davidia involucrata HOM05D000104 ORTHO05D004363 7.4e-48 194.5 137 75.9
MD03G1000600 Malus domestica HOM05D000104 ORTHO05D004363 7.4e-48 194.5 136 72.1
FAN21G1945 Fragaria x ananassa HOM05D000104 ORTHO05D004363 9.7e-48 194.1 139 73.4
MD11G1000100 Malus domestica HOM05D000104 ORTHO05D004363 2.8e-47 192.6 136 73.5
Cfa017683 Carpinus fangiana HOM05D000104 ORTHO05D004363 3.7e-47 192.2 136 73.5
DCAR_002184 Daucus carota HOM05D007440 ORTHO05D004363 4.8e-47 191.8 137 74.5
Thhalv10010052m.g Eutrema salsugineum HOM05D000104 ORTHO05D004363 8.2e-47 191.0 140 72.9
Sp5g08110 Schrenkiella parvula HOM05D000104 ORTHO05D004363 8.2e-47 191.0 140 72.9
vmacro00211 Vaccinium macrocarpon HOM05D000104 ORTHO05D004363 8.2e-47 191.0 137 74.5
GSVIVG01019359001 Vitis vinifera HOM05D000104 ORTHO05D004363 8.2e-47 191.0 148 70.9
QL09p044755 Quercus lobata HOM05D000104 ORTHO05D004363 2.4e-46 189.5 137 72.3
CARHR164200 Cardamine hirsuta HOM05D000104 ORTHO05D004363 4.1e-46 188.7 140 72.1
Carub.0005s2087 Capsella rubella HOM05D000104 ORTHO05D004363 7.0e-46 188.0 140 72.1
Eucgr.D01125 Eucalyptus grandis HOM05D000104 ORTHO05D004363 7.0e-46 188.0 136 69.9
AT3G54280 Arabidopsis thaliana HOM05D000104 ORTHO05D004363 2.0e-45 186.4 140 71.4
PSO832G0838 Papaver somniferum HOM05D000104 ORTHO05D004363 2.0e-45 186.4 138 73.9
Nitab4.5_0001131g0020 Nicotiana tabacum HOM05D000104 ORTHO05D004363 3.4e-45 185.7 117 82.9
THA.LOC104819143 Tarenaya hassleriana HOM05D000104 ORTHO05D004363 7.7e-45 184.5 137 72.3
A09p47280 Brassica napus HOM05D000104 ORTHO05D004363 1.3e-44 183.7 138 71.0
BraA09t40189Z Brassica rapa HOM05D000104 ORTHO05D004363 1.3e-44 183.7 139 70.5
CANSAT35G1590 Cannabis sativa HOM05D000104 ORTHO05D004363 1.3e-44 183.7 139 69.8
AL5G35320 Arabidopsis lyrata HOM05D000104 ORTHO05D004363 1.7e-44 183.3 140 70.7
ClCG05G011380 Citrullus lanatus HOM05D000104 ORTHO05D004363 2.9e-44 182.6 136 69.9
Aa31sc392G40 Aethionema arabicum HOM05D000104 ORTHO05D004363 6.5e-44 181.4 137 71.5
C08p29510 Brassica napus HOM05D000104 ORTHO05D004363 8.5e-44 181.0 138 70.3
BolC8t50557H Brassica oleracea HOM05D000104 ORTHO05D004363 8.5e-44 181.0 138 70.3
Nn3g17003 Nelumbo nucifera HOM05D000104 ORTHO05D004363 1.1e-43 180.6 138 68.8
BcaC02g09076 Brassica carinata HOM05D000104 ORTHO05D004363 1.4e-43 180.3 137 70.1
Sed0011777 Sechium edule HOM05D000104 ORTHO05D004363 3.2e-43 179.1 136 69.1
Lsat_1_v5_gn_5_59321 Lactuca sativa HOM05D000104 ORTHO05D004363 4.2e-43 178.7 137 70.8
Aqoxy7G00075 Aquilegia oxysepala HOM05D000104 ORTHO05D004363 2.1e-42 176.4 147 66.7
HanXRQChr03g0082351 Helianthus annuus HOM05D000104 ORTHO05D004363 2.1e-42 176.4 137 69.3
ECA240G3782 Erigeron canadensis HOM05D000104 ORTHO05D004363 2.7e-42 176.0 137 70.1
MELO3C020235.2 Cucumis melo HOM05D000104 ORTHO05D004363 8.0e-42 174.5 136 67.6
CsaV3_3G021040 Cucumis sativus L. HOM05D000104 ORTHO05D004363 6.7e-41 171.4 136 66.2
CsaV3_4G017740 Cucumis sativus L. HOM05D000104 ORTHO05D004363 6.7e-41 171.4 136 66.2
SHI06790 Sapria himalayana HOM05D000190 ORTHO05D004363 8.8e-41 171.0 137 66.4
C04p38170 Brassica napus HOM05D000104 ORTHO05D004363 1.2e-37 160.6 139 62.6
HPP92_015726 Vanilla planifolia HOM05D000104 ORTHO05D004363 1.6e-37 160.2 137 62.8
SEGI_24237 Sequoiadendron giganteum HOM05D000104 ORTHO05D004363 5.9e-37 158.3 139 64.7
Zm00001eb297280 Zea mays HOM05D000104 ORTHO05D004363 3.8e-36 155.6 139 64.0
ATR0665G650 Amborella trichopoda HOM05D000104 ORTHO05D004363 3.2e-35 152.5 122 66.4
CDE06G1340 Ceratophyllum demersum HOM05D000104 ORTHO05D004363 3.2e-35 152.5 139 61.9
Sc05g0007890 Simmondsia chinensis HOM05D000104 ORTHO05D004363 4.0e-33 145.6 142 62.0
Hund23685 Selenicereus undatus HOM05D000104 ORTHO05D004363 5.2e-33 145.2 135 62.2
AUR62014777 Chenopodium quinoa HOM05D000104 ORTHO05D004363 1.2e-32 144.1 134 63.4
AUR62016963 Chenopodium quinoa HOM05D000104 ORTHO05D004363 1.2e-32 144.1 134 63.4
FAN16G0934 Fragaria x ananassa HOM05D000104 ORTHO05D004363 2.0e-32 143.3 117 62.4
Mapoly0038s0059 Marchantia polymorpha HOM05D000104 ORTHO05D004363 1.6e-29 133.7 139 58.3
Pp3c3_11220 Physcomitrium patens HOM05D000104 ORTHO05D004363 2.0e-29 133.3 136 56.6
AagrBONN_evm.TU.Sc2ySwM_228.1549 Anthoceros agrestis HOM05D000104 ORTHO05D004363 5.5e-27 125.2 139 52.5
Haze_20467 Corylus avellana HOM05D000104 ORTHO05D004363 7.2e-27 124.8 90 68.9
Ah.14g089210 Amaranthus hybridus HOM05D000104 ORTHO05D004363 1.4e-25 120.6 138 53.6
SMO223G0022 Selaginella moellendorffii HOM05D000104 ORTHO05D004363 1.2e-24 117.5 142 52.8
Lj7C413G9 Lonicera japonica HOM05D000104 ORTHO05D004363 5.7e-24 115.2 84 70.2
Rhsim03G0207500 Rhododendron simsii HOM05D000104 ORTHO05D004363 6.3e-23 111.7 262 34.0
unitig_92.g28135 Utricularia gibba HOM05D000104 ORTHO05D004363 8.3e-23 111.3 108 55.6
unitig_93.g30710 Utricularia gibba HOM05D000104 ORTHO05D004363 3.1e-22 109.4 97 58.8
Sabra13G0059700 Salix brachista HOM05D000104 ORTHO05D004363 1.7e-20 103.6 105 58.1
CBR_g57043 Chara braunii HOM05D000104 ORTHO05D004363 1.0e-17 94.4 102 51.0
Cre16.g687301 Chlamydomonas reinhardtii HOM05D000104 ORTHO05D004363 1.8e-14 83.6 133 39.8
MCO02G056 Micromonas commoda HOM05D000104 ORTHO05D004363 9.2e-14 81.3 77 53.2
BraA04t16249Z Brassica rapa HOM05D000104 ORTHO05D004363 8.6e-12 74.7 45 86.7
VMungo0464G1762 Vigna mungo HOM05D000001 ORTHO05D001247 2.2e-07 60.1 91 47.3


User provided reference genes

Program Settings