Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1941.2 Capsicum annuum HOM05D004147 ORTHO05D005606 3.8e-157 558.1 282 100.0
Sopen01g025520 Solanum pennellii HOM05D004147 ORTHO05D005606 4.0e-143 511.5 286 90.9
Dinv06248 Davidia involucrata HOM05D004147 ORTHO05D005606 7.9e-139 497.3 283 87.3
Dinv15522 Davidia involucrata HOM05D004147 ORTHO05D005606 7.9e-139 497.3 283 87.3
PGR102G2115 Punica granatum HOM05D004147 ORTHO05D005606 2.1e-136 489.2 283 85.9
Glyma.07G225200 Glycine max HOM05D004147 ORTHO05D005606 9.0e-135 483.8 284 85.2
QL01p007763 Quercus lobata HOM05D004147 ORTHO05D005606 4.5e-134 481.5 305 80.0
Nn2g15911 Nelumbo nucifera HOM05D004147 ORTHO05D005606 1.3e-133 479.9 278 86.0
FvH4_3g46070 Fragaria vesca HOM05D004147 ORTHO05D005606 4.9e-133 478.0 291 83.2
MD03G1000100 Malus domestica HOM05D004147 ORTHO05D005606 4.9e-133 478.0 298 80.9
MD11G1000500 Malus domestica HOM05D004147 ORTHO05D005606 4.9e-133 478.0 301 81.4
Thecc.09G206400 Theobroma cacao HOM05D004147 ORTHO05D005606 6.5e-133 477.6 275 86.2
CsaV3_1G041490 Cucumis sativus L. HOM05D004147 ORTHO05D005606 8.4e-133 477.2 304 79.9
CiPaw.13G180000 Carya illinoinensis HOM05D004147 ORTHO05D005606 1.9e-132 476.1 289 83.0
MELO3C015560.2 Cucumis melo HOM05D004147 ORTHO05D005606 1.9e-132 476.1 304 79.6
VMungo0251G0902 Vigna mungo HOM05D004147 ORTHO05D005606 1.9e-132 476.1 285 84.2
COL.COLO4_35060 Corchorus olitorius HOM05D004147 ORTHO05D005606 2.5e-132 475.7 274 86.1
Prupe.6G000600 Prunus persica HOM05D004147 ORTHO05D005606 2.5e-132 475.7 307 79.8
CANSAT35G0441 Cannabis sativa HOM05D004147 ORTHO05D005606 3.2e-132 475.3 273 86.1
Phvul.002G101600 Phaseolus vulgaris HOM05D004147 ORTHO05D005606 4.2e-132 474.9 285 83.9
Dinv09765 Davidia involucrata HOM05D004147 ORTHO05D005606 5.5e-132 474.6 290 83.4
Glyma.20G025100 Glycine max HOM05D004147 ORTHO05D005606 7.1e-132 474.2 287 83.6
Potri.003G224000 Populus trichocarpa HOM05D004147 ORTHO05D005606 7.1e-132 474.2 303 79.5
Gohir.D05G000800 Gossypium hirsutum HOM05D004147 ORTHO05D005606 9.3e-132 473.8 287 82.9
Ca_18795_v3 Cicer arietinum L. HOM05D004147 ORTHO05D005606 1.2e-131 473.4 296 81.1
CSS0011494 Camellia sinensis var. sinensis HOM05D004147 ORTHO05D005606 2.1e-131 472.6 293 82.6
Gohir.A05G000500 Gossypium hirsutum HOM05D004147 ORTHO05D005606 2.7e-131 472.2 287 82.9
Oeu023957.1 Olea europaea HOM05D004147 ORTHO05D005606 2.7e-131 472.2 287 82.6
TPR.G34051 Trifolium pratense HOM05D004147 ORTHO05D005606 2.7e-131 472.2 289 82.4
Atru.chr3.2044 Acer truncatum HOM05D004147 ORTHO05D005606 3.5e-131 471.9 302 79.8
Lj4g0017588 Lotus japonicus HOM05D004147 ORTHO05D005606 1.0e-130 470.3 291 82.5
TWI60G0666 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 1.8e-130 469.5 283 83.0
Duzib150G1508 Durio zibethinus HOM05D004147 ORTHO05D005606 5.1e-130 468.0 298 80.2
TAR633G2501 Trochodendron aralioides HOM05D004147 ORTHO05D005606 8.7e-130 467.2 283 82.0
Medtr4g083230 Medicago truncatula HOM05D004147 ORTHO05D005606 1.1e-129 466.8 295 80.3
Cpa.g.sc119.7 Carica papaya HOM05D004147 ORTHO05D005606 1.5e-129 466.5 273 84.2
Peaxi162Scf01181g00019 Petunia axillaris HOM05D004147 ORTHO05D005606 1.9e-129 466.1 322 78.0
Hund19733 Selenicereus undatus HOM05D004147 ORTHO05D005606 2.5e-129 465.7 280 82.9
TAR623G0988 Trochodendron aralioides HOM05D004147 ORTHO05D005606 3.3e-129 465.3 278 83.8
Potri.001G000700 Populus trichocarpa HOM05D004147 ORTHO05D005606 9.6e-129 463.8 298 79.5
MSTRG.19397 Avicennia marina HOM05D004147 ORTHO05D005606 2.1e-128 462.6 283 83.4
Ciclev10016090m.g Citrus clementina HOM05D004147 ORTHO05D005606 2.1e-128 462.6 273 83.9
Cc01_g00350 Coffea canephora HOM05D004147 ORTHO05D005606 2.1e-128 462.6 286 83.9
Gohir.D03G147100 Gossypium hirsutum HOM05D004147 ORTHO05D005606 2.8e-128 462.2 296 79.1
FAN11G3393 Fragaria x ananassa HOM05D004147 ORTHO05D005606 3.7e-128 461.8 317 76.0
Migut.N00528 Erythranthe guttata HOM05D004147 ORTHO05D005606 4.8e-128 461.5 292 80.1
Rhsim13G0235300 Rhododendron simsii HOM05D004147 ORTHO05D005606 4.8e-128 461.5 326 74.2
Sc09g0002150 Simmondsia chinensis HOM05D004147 ORTHO05D005606 8.2e-128 460.7 284 81.7
AUR62040894 Chenopodium quinoa HOM05D004147 ORTHO05D005606 1.1e-127 460.3 274 83.9
FAN16G1044 Fragaria x ananassa HOM05D004147 ORTHO05D005606 1.4e-127 459.9 322 74.8
TWI34G0273 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 1.4e-127 459.9 288 81.2
Gohir.A03G021600 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.8e-127 459.5 296 79.4
MSTRG.5958 Avicennia marina HOM05D004147 ORTHO05D005606 2.4e-127 459.1 286 80.1
DCAR_001959 Daucus carota HOM05D004147 ORTHO05D005606 3.1e-127 458.8 284 82.0
RcHm_v2.0_Chr5g0084131 Rosa chinensis HOM05D004147 ORTHO05D005606 5.3e-127 458.0 297 78.8
Lalb_Chr16g0385471 Lupinus albus HOM05D004147 ORTHO05D005606 4.5e-126 454.9 293 79.5
Duzib170G0806 Durio zibethinus HOM05D004147 ORTHO05D005606 7.6e-126 454.1 274 82.8
Lalb_Chr09g0328961 Lupinus albus HOM05D004147 ORTHO05D005606 2.2e-125 452.6 298 78.2
Gorai.003G154600 Gossypium raimondii HOM05D004147 ORTHO05D005606 3.8e-125 451.8 299 77.6
MBI19_g24069_MAGBIO Magnolia biondii HOM05D004147 ORTHO05D005606 1.4e-124 449.9 267 83.9
TWI32G0854 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 1.4e-124 449.9 287 80.5
arahy.Tifrunner.gnm1.ann1.41N8FB Arachis hypogaea HOM05D004147 ORTHO05D005606 5.5e-124 448.0 273 81.0
arahy.Tifrunner.gnm1.ann1.JJ8YPF Arachis hypogaea HOM05D004147 ORTHO05D005606 5.5e-124 448.0 273 81.0
FAN21G1018 Fragaria x ananassa HOM05D004147 ORTHO05D005606 7.1e-124 447.6 296 78.7
ClCG03G014680 Citrullus lanatus HOM05D004147 ORTHO05D005606 9.3e-124 447.2 304 76.3
Eucgr.J01722 Eucalyptus grandis HOM05D004147 ORTHO05D005606 9.3e-124 447.2 299 76.9
Hma1.2p1_0589F.1_g184660 Hydrangea macrophylla HOM05D004147 ORTHO05D005606 1.2e-123 446.8 303 76.6
Haze_22914 Corylus avellana HOM05D004147 ORTHO05D005606 2.1e-123 446.0 301 76.7
EL10Ac4g10393 Beta vulgaris HOM05D004147 ORTHO05D005606 3.5e-123 445.3 285 80.4
PSO339G2679 Papaver somniferum HOM05D004147 ORTHO05D005606 3.5e-123 445.3 281 81.1
PSO384G4999 Papaver somniferum HOM05D004147 ORTHO05D005606 3.5e-123 445.3 281 81.1
Aqoxy2G00002 Aquilegia oxysepala HOM05D004147 ORTHO05D005606 6.1e-123 444.5 289 78.5
Actinidia16222 Actinidia chinensis HOM05D000201 ORTHO05D001601 1.8e-122 443.0 252 86.9
CARHR125880 Cardamine hirsuta HOM05D004147 ORTHO05D005606 5.1e-122 441.4 293 75.4
ECA238G2098 Erigeron canadensis HOM05D004147 ORTHO05D005606 1.9e-121 439.5 302 77.2
HanXRQChr14g0437101 Helianthus annuus HOM05D004147 ORTHO05D005606 2.5e-121 439.1 295 78.6
Sed0000702 Sechium edule HOM05D004147 ORTHO05D005606 3.3e-121 438.7 273 78.8
Sp4g14490 Schrenkiella parvula HOM05D004147 ORTHO05D005606 9.7e-121 437.2 290 76.2
Thhalv10017021m.g Eutrema salsugineum HOM05D004147 ORTHO05D005606 2.2e-120 436.0 293 75.8
ATR0068G003 Amborella trichopoda HOM05D004147 ORTHO05D005606 2.8e-120 435.6 277 78.3
Ah.04g161370 Amaranthus hybridus HOM05D004147 ORTHO05D005606 6.3e-120 434.5 292 78.4
GSVIVG01025513001 Vitis vinifera HOM05D004147 ORTHO05D005606 9.0e-119 430.6 283 79.2
BraA05t20280Z Brassica rapa HOM05D004147 ORTHO05D005606 1.5e-118 429.9 292 75.7
AUR62042623 Chenopodium quinoa HOM05D004147 ORTHO05D005606 1.5e-118 429.9 309 72.5
Carub.0004s1343 Capsella rubella HOM05D004147 ORTHO05D005606 4.5e-118 428.3 273 77.3
PSO541G5718 Papaver somniferum HOM05D004147 ORTHO05D005606 1.3e-117 426.8 277 78.7
PSO675G6472 Papaver somniferum HOM05D004147 ORTHO05D005606 1.3e-117 426.8 277 79.1
Sc16g0009630 Simmondsia chinensis HOM05D004147 ORTHO05D005606 1.3e-117 426.8 284 76.1
AT2G32080 Arabidopsis thaliana HOM05D004147 ORTHO05D005606 2.2e-117 426.0 272 77.6
C04p17540 Brassica napus HOM05D004147 ORTHO05D005606 2.2e-117 426.0 291 74.9
BolC4t23301H Brassica oleracea HOM05D004147 ORTHO05D005606 2.2e-117 426.0 291 74.9
SGA_v2.0_scaffold6G03333 Striga asiatica HOM05D000201 ORTHO05D005606 3.8e-117 425.2 310 71.9
Sabra01G0000600 Salix brachista HOM05D004147 ORTHO05D005606 5.0e-117 424.9 334 69.2
vmacro04279 Vaccinium macrocarpon HOM05D004147 ORTHO05D005606 5.0e-117 424.9 308 73.7
HPP92_018009 Vanilla planifolia HOM05D004147 ORTHO05D005606 5.0e-117 424.9 280 75.7
A05p13420 Brassica napus HOM05D004147 ORTHO05D005606 6.5e-117 424.5 292 75.3
CDE09G0171 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 6.5e-117 424.5 274 75.5
SGA_v2.0_scaffold3G01703 Striga asiatica HOM05D004147 ORTHO05D005606 6.5e-117 424.5 290 76.9
Aa31LG5G4940 Aethionema arabicum HOM05D004147 ORTHO05D005606 5.5e-116 421.4 320 69.1
AL103U10050 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 6.1e-115 417.9 293 73.4
AL4G27460 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 6.1e-115 417.9 293 73.4
Zm00001eb127970 Zea mays HOM05D004147 ORTHO05D005606 2.5e-113 412.5 286 72.7
SalBow3G0983 Salvia bowleyana HOM05D004147 ORTHO05D005606 7.4e-113 411.0 296 75.3
Os01g0260700 Oryza sativa ssp. japonica HOM05D004147 ORTHO05D005606 2.2e-112 409.5 278 73.7
CAN.G281.7 Capsicum annuum HOM05D004147 ORTHO05D005606 4.8e-112 408.3 274 80.3
Zm00001eb333400 Zea mays HOM05D004147 ORTHO05D005606 4.8e-112 408.3 276 74.3
CDE04G0726 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.1e-111 407.1 278 73.4
Nitab4.5_0000890g0080 Nicotiana tabacum HOM05D004147 ORTHO05D005606 1.9e-108 396.4 290 74.5
Nitab4.5_0000075g0060 Nicotiana tabacum HOM05D004147 ORTHO05D005606 3.2e-108 395.6 292 74.0
Manes.15G111500 Manihot esculenta HOM05D004147 ORTHO05D005606 1.5e-105 386.7 233 83.3
Psat7g134480 Pisum sativum HOM05D004147 ORTHO05D005606 1.5e-105 386.7 222 86.0
Sed0015400 Sechium edule HOM05D004147 ORTHO05D005606 2.8e-104 382.5 257 76.7
CDE02G2463 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 3.8e-101 372.1 264 70.8
Lsat_1_v5_gn_2_50601 Lactuca sativa HOM05D004147 ORTHO05D005606 6.7e-98 361.3 290 67.2
CDE08G0894 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.8e-95 353.2 249 71.9
unitig_62.g23531 Utricularia gibba HOM05D004147 ORTHO05D005606 7.0e-95 351.3 254 70.1
TAR623G0822 Trochodendron aralioides HOM05D004147 ORTHO05D005606 4.8e-88 328.6 205 80.5
Nn7g35773 Nelumbo nucifera HOM05D004147 ORTHO05D005606 1.6e-86 323.6 196 85.2
Pp3c14_13490 Physcomitrium patens HOM05D004147 ORTHO05D005606 5.9e-86 321.6 285 59.6
Pp3c17_4780 Physcomitrium patens HOM05D004147 ORTHO05D005606 1.0e-85 320.9 291 60.8
AagrBONN_evm.TU.Sc2ySwM_368.1732 Anthoceros agrestis HOM05D004147 ORTHO05D005606 1.7e-85 320.1 284 59.9
Solyc01g049680.3 Solanum lycopersicum HOM05D004147 ORTHO05D005606 1.1e-84 317.4 180 89.4
BcaB02g10449 Brassica carinata HOM05D004147 ORTHO05D005606 1.6e-83 313.5 224 72.8
CBR_g3650 Chara braunii HOM05D004147 ORTHO05D005606 1.6e-83 313.5 297 57.9
SEGI_18063 Sequoiadendron giganteum HOM05D004147 ORTHO05D005606 2.1e-83 313.2 267 62.2
CDE02G0470 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 2.3e-82 309.7 246 66.3
Actinidia00922 Actinidia chinensis HOM05D004147 ORTHO05D005606 5.9e-78 295.0 190 78.4
CDE08G0994 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.1e-76 290.8 202 69.8
Sabra03G0166400 Salix brachista HOM05D004147 ORTHO05D005606 2.8e-75 286.2 181 79.6
SMO164G0008 Selaginella moellendorffii HOM05D004147 ORTHO05D005606 3.4e-73 279.3 259 58.3
Lj1A564T30 Lonicera japonica HOM05D004147 ORTHO05D005606 6.4e-64 248.4 246 61.0
unitig_52.g17528 Utricularia gibba HOM05D004147 ORTHO05D005606 2.3e-61 240.0 189 65.1
Gorai.009G000700 Gossypium raimondii HOM05D004147 ORTHO05D005606 1.7e-56 223.8 147 76.2
Solyc01g049690.4 Solanum lycopersicum HOM05D004147 ORTHO05D005606 2.0e-49 200.3 108 91.7
Gorai.009G000600 Gossypium raimondii HOM05D004147 ORTHO05D005606 4.4e-49 199.1 110 88.2
HPP92_026678 Vanilla planifolia HOM05D004147 ORTHO05D005606 8.4e-48 194.9 109 84.4
CAN.G640.3 Capsicum annuum HOM05D004147 ORTHO05D005606 1.2e-46 191.0 106 87.7
CAN.G678.10 Capsicum annuum HOM05D004147 ORTHO05D005606 1.2e-43 181.0 113 78.8
Sabra01G0000400 Salix brachista HOM05D004147 ORTHO05D005606 6.2e-43 178.7 116 77.6
Lj1A564T31 Lonicera japonica HOM05D004147 ORTHO05D005606 2.9e-40 169.9 136 69.1
FAN25G3109 Fragaria x ananassa HOM05D004147 ORTHO05D005606 1.3e-37 161.0 95 85.3
Potri.013G061100 Populus trichocarpa HOM05D004147 ORTHO05D005606 1.1e-36 157.9 262 37.8
unitig_52.g17527 Utricularia gibba HOM05D004147 ORTHO05D005606 6.2e-35 152.1 94 80.9
MBI05_g14947_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D002599 5.8e-33 145.6 101 68.3
Sabra01G0000300 Salix brachista HOM05D004147 ORTHO05D005606 2.9e-32 143.3 104 71.2
Lsat_1_v5_gn_4_94280 Lactuca sativa HOM05D004147 ORTHO05D005606 1.4e-31 141.0 231 40.7
PRCOL_00001079 Prasinoderma coloniale HOM05D004147 ORTHO05D005606 7.1e-31 138.7 258 33.7
Cre06.g278208 Chlamydomonas reinhardtii HOM05D004147 ORTHO05D005606 2.1e-27 127.1 248 33.1
Oeu023697.1 Olea europaea HOM05D004147 ORTHO05D005606 5.8e-25 119.0 66 84.8
TWI32G1322 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 7.6e-25 118.6 257 31.9
C08p28370 Brassica napus HOM05D004147 ORTHO05D021856 9.9e-25 118.2 118 58.5
BolC8t50447H Brassica oleracea HOM05D004147 ORTHO05D021856 9.9e-25 118.2 118 58.5
A03p64870 Brassica napus HOM05D004147 ORTHO05D005606 1.7e-24 117.5 185 41.6
BolC2t11193H Brassica oleracea HOM05D004147 ORTHO05D005606 8.4e-24 115.2 118 58.5
BraA03t15549Z Brassica rapa HOM05D004147 ORTHO05D018802 1.1e-23 114.8 118 57.6
BcaC03g17178 Brassica carinata HOM05D004147 ORTHO05D021856 1.4e-23 114.4 105 62.9
BolC5t32093H Brassica oleracea HOM05D004147 ORTHO05D021856 1.9e-23 114.0 118 57.6
C02p30750 Brassica napus HOM05D004147 ORTHO05D021856 1.2e-22 111.3 118 56.8
C05p33620 Brassica napus HOM05D004147 ORTHO05D021856 2.1e-22 110.5 118 56.8
TAR623G1050 Trochodendron aralioides HOM05D004147 ORTHO05D005606 6.2e-19 99.0 50 96.0
BraA05t19995Z Brassica rapa HOM05D004147 ORTHO05D018802 6.9e-18 95.5 152 39.5
BcaC07g39671 Brassica carinata HOM05D004147 ORTHO05D005606 9.0e-18 95.1 85 61.2
BcaC07g38232 Brassica carinata HOM05D004147 ORTHO05D005606 1.0e-16 91.7 152 38.8
BraA09t36212Z Brassica rapa HOM05D004147 ORTHO05D018802 8.4e-16 88.6 83 60.2
Lsat_1_v5_gn_8_97821 Lactuca sativa HOM05D004147 ORTHO05D005606 1.9e-15 87.4 58 77.6
HanXRQChr10g0307541 Helianthus annuus HOM05D004147 ORTHO05D005606 6.0e-14 82.4 46 80.4


User provided reference genes

Program Settings