Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G176.12 Capsicum annuum HOM05D005084 ORTHO05D043464 5.5e-56 221.1 142 100.0
CAN.G108.31 Capsicum annuum HOM05D005084 ORTHO05D006254 3.7e-12 75.5 50 80.0
PGSC0003DMG400009072 Solanum tuberosum HOM05D005084 ORTHO05D006254 4.9e-12 75.1 50 80.0
Solyc03g007370.3 Solanum lycopersicum HOM05D005084 ORTHO05D006254 1.4e-11 73.6 50 78.0
Sopen03g003330 Solanum pennellii HOM05D005084 ORTHO05D006254 4.1e-11 72.0 50 76.0
Nitab4.5_0002589g0060 Nicotiana tabacum HOM05D005084 ORTHO05D006254 2.7e-10 69.3 50 74.0
Nitab4.5_0014729g0010 Nicotiana tabacum HOM05D005084 ORTHO05D006254 7.8e-10 67.8 50 72.0
Peaxi162Scf00904g00132 Petunia axillaris HOM05D005084 ORTHO05D006254 7.8e-10 67.8 50 74.0
Oeu049102.1 Olea europaea HOM05D005084 ORTHO05D006254 1.3e-09 67.0 50 68.0
Cc02_g01850 Coffea canephora HOM05D005084 ORTHO05D006254 1.1e-08 63.9 50 64.0
Haze_00097 Corylus avellana HOM05D005084 ORTHO05D006254 2.5e-08 62.8 57 56.1
Haze_00115 Corylus avellana HOM05D005084 ORTHO05D006254 3.3e-08 62.4 57 56.1
Nitab4.5_0016174g0020 Nicotiana tabacum HOM05D000445 ORTHO05D000314 5.6e-08 61.6 67 80.6
CAN.G1648.15 Capsicum annuum HOM05D000445 ORTHO05D000314 7.3e-08 61.2 65 84.6
CAN.G129.16 Capsicum annuum HOM05D000445 ORTHO05D000314 9.5e-08 60.8 65 86.2
Cfa016364 Carpinus fangiana HOM05D005084 ORTHO05D006254 9.5e-08 60.8 57 56.1
Oeu039181.1 Olea europaea HOM05D005084 ORTHO05D006254 9.5e-08 60.8 50 62.0
CSS0047578 Camellia sinensis var. sinensis HOM05D005084 ORTHO05D006254 1.2e-07 60.5 50 64.0
CAN.G1298.14 Capsicum annuum HOM05D000445 ORTHO05D000314 1.2e-07 60.5 65 86.2
CAN.G1298.21 Capsicum annuum HOM05D000445 ORTHO05D000314 1.2e-07 60.5 65 86.2
CAN.G134.4 Capsicum annuum HOM05D000445 ORTHO05D000314 1.2e-07 60.5 65 86.2
CAN.G1738.16 Capsicum annuum HOM05D000445 ORTHO05D000314 1.2e-07 60.5 65 86.2
CAN.G201.48 Capsicum annuum HOM05D000445 ORTHO05D000314 1.2e-07 60.5 65 86.2
CAN.G219.12 Capsicum annuum HOM05D000445 ORTHO05D000314 1.2e-07 60.5 65 86.2
CAN.G838.7 Capsicum annuum HOM05D000445 ORTHO05D000314 1.2e-07 60.5 65 86.2
CAN.G939.8 Capsicum annuum HOM05D000445 ORTHO05D000314 1.2e-07 60.5 65 86.2
Solyc00g500037.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.2e-07 60.5 65 86.2
Solyc00g500046.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.2e-07 60.5 65 86.2
Solyc00g500081.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.2e-07 60.5 65 86.2
Solyc00g500128.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.2e-07 60.5 65 86.2
Solyc00g500198.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.2e-07 60.5 65 86.2
Solyc00g500327.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.2e-07 60.5 65 86.2
Solyc09g061465.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.2e-07 60.5 65 86.2
Sopen02g009120 Solanum pennellii HOM05D000445 ORTHO05D000314 1.2e-07 60.5 65 86.2
Sopen10g008920 Solanum pennellii HOM05D000445 ORTHO05D000314 1.2e-07 60.5 65 86.2
PGSC0003DMG400020691 Solanum tuberosum HOM05D000445 ORTHO05D000314 1.2e-07 60.5 65 86.2
Dinv28334 Davidia involucrata HOM05D005084 ORTHO05D006254 1.6e-07 60.1 50 60.0
Hma1.2p1_1655F.1_g295960 Hydrangea macrophylla HOM05D005084 ORTHO05D006254 1.6e-07 60.1 50 66.0
QL09p010880 Quercus lobata HOM05D005084 ORTHO05D006254 1.6e-07 60.1 57 54.4
MSTRG.60 Avicennia marina HOM05D005084 ORTHO05D006254 2.1e-07 59.7 50 62.0
CAN.G1397.8 Capsicum annuum HOM05D000445 ORTHO05D000314 2.1e-07 59.7 65 70.8
Dinv35309 Davidia involucrata HOM05D005084 ORTHO05D006254 2.8e-07 59.3 50 60.0
Nitab4.5_0001946g0030 Nicotiana tabacum HOM05D000445 ORTHO05D000314 3.6e-07 58.9 65 52.3
GSVIVG01028717001 Vitis vinifera HOM05D005084 ORTHO05D006254 3.6e-07 58.9 50 60.0
CSS0033126 Camellia sinensis var. sinensis HOM05D005084 ORTHO05D006254 4.7e-07 58.5 50 62.0
DCAR_014530 Daucus carota HOM05D002314 ORTHO05D006254 4.7e-07 58.5 57 54.4
ECA238G2040 Erigeron canadensis HOM05D005084 ORTHO05D006254 4.7e-07 58.5 50 62.0
Nitab4.5_0000223g0180 Nicotiana tabacum HOM05D000445 ORTHO05D000314 4.7e-07 58.5 65 81.5
CiPaw.06G007800 Carya illinoinensis HOM05D005084 ORTHO05D006254 6.1e-07 58.2 57 52.6
Medtr3g090900 Medicago truncatula HOM05D005084 ORTHO05D006254 6.1e-07 58.2 66 51.5
Sabra15G0016500 Salix brachista HOM05D005084 ORTHO05D006254 6.1e-07 58.2 50 58.0
RcHm_v2.0_Chr3g0492051 Rosa chinensis HOM05D005084 ORTHO05D043464 8.0e-07 57.8 52 57.7
THA.LOC104801874 Tarenaya hassleriana HOM05D005084 ORTHO05D006254 8.0e-07 57.8 50 58.0
MSTRG.8499 Avicennia marina HOM05D005084 ORTHO05D006254 1.0e-06 57.4 50 60.0
arahy.Tifrunner.gnm1.ann1.77AFJV Arachis hypogaea HOM05D005084 ORTHO05D006254 1.4e-06 57.0 50 58.0
MBI07_g14395_MAGBIO Magnolia biondii HOM05D005084 ORTHO05D006254 1.4e-06 57.0 57 54.4
Prupe.2G307500 Prunus persica HOM05D005084 ORTHO05D006254 1.4e-06 57.0 50 58.0
arahy.Tifrunner.gnm1.ann1.AT7H7M Arachis hypogaea HOM05D005084 ORTHO05D006254 1.8e-06 56.6 66 50.0
Nn3g19059 Nelumbo nucifera HOM05D005084 ORTHO05D006254 1.8e-06 56.6 49 55.1
Nitab4.5_0023562g0020 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.8e-06 56.6 65 61.5
Potri.015G022100 Populus trichocarpa HOM05D005084 ORTHO05D006254 1.8e-06 56.6 50 58.0
Thecc.03G193300 Theobroma cacao HOM05D005084 ORTHO05D006254 1.8e-06 56.6 61 50.8
Glyma.04G238200 Glycine max HOM05D005084 ORTHO05D006254 2.3e-06 56.2 50 58.0
Glyma.06G125700 Glycine max HOM05D005084 ORTHO05D006254 2.3e-06 56.2 50 58.0
Sabra12G0020700 Salix brachista HOM05D005084 ORTHO05D006254 2.3e-06 56.2 50 58.0
Solyc04g024580.2 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.3e-06 56.2 65 81.5
TAR374G0350 Trochodendron aralioides HOM05D005084 ORTHO05D006254 2.3e-06 56.2 51 54.9
MBI07_g26938_MAGBIO Magnolia biondii HOM05D005084 ORTHO05D006254 4.0e-06 55.5 50 58.0
RcHm_v2.0_Chr1g0380131 Rosa chinensis HOM05D005084 ORTHO05D006254 4.0e-06 55.5 50 60.0
Sed0009531 Sechium edule HOM05D005084 ORTHO05D006254 4.0e-06 55.5 50 54.0
VMungo1309G1129 Vigna mungo HOM05D005084 ORTHO05D006254 4.0e-06 55.5 66 51.5
Migut.F01049 Erythranthe guttata HOM05D005084 ORTHO05D006254 5.2e-06 55.1 50 56.0
Eucgr.A02665 Eucalyptus grandis HOM05D005084 ORTHO05D006254 5.2e-06 55.1 50 54.0
Nitab4.5_0016174g0010 Nicotiana tabacum HOM05D000445 ORTHO05D000314 5.2e-06 55.1 65 49.2
Actinidia34200 Actinidia chinensis HOM05D005084 ORTHO05D006254 6.8e-06 54.7 50 58.0
Ciclev10004760m.g Citrus clementina HOM05D005084 ORTHO05D006254 6.8e-06 54.7 50 60.0
FAN01G1592 Fragaria x ananassa HOM05D005084 ORTHO05D006254 6.8e-06 54.7 58 50.0
Lj1g0020917 Lotus japonicus HOM05D005084 ORTHO05D006254 6.8e-06 54.7 50 56.0
Manes.06G157400 Manihot esculenta HOM05D005084 ORTHO05D006254 6.8e-06 54.7 57 50.9
SalBow2G2003 Salvia bowleyana HOM05D005084 ORTHO05D006254 6.8e-06 54.7 50 56.0
Solyc00g500147.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 6.8e-06 54.7 65 81.5
Nitab4.5_0007979g0010 Nicotiana tabacum HOM05D000445 ORTHO05D000314 8.9e-06 54.3 106 56.6
Phvul.009G137600 Phaseolus vulgaris HOM05D005084 ORTHO05D006254 8.9e-06 54.3 50 58.0
Potri.012G031100 Populus trichocarpa HOM05D005084 ORTHO05D006254 8.9e-06 54.3 50 58.0
TAR374G1373 Trochodendron aralioides HOM05D005084 ORTHO05D006254 8.9e-06 54.3 51 52.9


User provided reference genes

Program Settings