Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G17019.1 Capsicum annuum HOM05D003609 ORTHO05D004185 8.9e-78 293.5 145 100.0
CAN.G1126.16 Capsicum annuum HOM05D003609 ORTHO05D004185 6.2e-71 270.8 132 100.0
CAN.G17306.1 Capsicum annuum HOM05D003609 ORTHO05D004185 3.3e-64 248.4 134 90.3
CAN.G371.123 Capsicum annuum HOM05D003609 ORTHO05D004185 3.3e-64 248.4 134 90.3
Nitab4.5_0005101g0010 Nicotiana tabacum HOM05D003609 ORTHO05D004185 1.9e-43 179.5 136 66.9
CAN.G1437.4 Capsicum annuum HOM05D003609 ORTHO05D004185 1.5e-37 159.8 134 64.9
Nitab4.5_0000100g0230 Nicotiana tabacum HOM05D003609 ORTHO05D004185 1.5e-37 159.8 134 64.9
Nitab4.5_0001633g0010 Nicotiana tabacum HOM05D003609 ORTHO05D004185 1.5e-37 159.8 134 64.9
Solyc02g021650.3 Solanum lycopersicum HOM05D003609 ORTHO05D004185 1.5e-37 159.8 134 64.9
Sopen02g006220 Solanum pennellii HOM05D003609 ORTHO05D004185 1.5e-37 159.8 134 64.9
Peaxi162Scf00213g01216 Petunia axillaris HOM05D003609 ORTHO05D004185 2.0e-37 159.5 134 64.2
Peaxi162Scf00155g01114 Petunia axillaris HOM05D003609 ORTHO05D004185 5.8e-37 157.9 134 63.4
Gohir.D02G238300 Gossypium hirsutum HOM05D003609 ORTHO05D004185 3.2e-35 152.1 137 61.3
Gorai.005G266800 Gossypium raimondii HOM05D003609 ORTHO05D004185 3.2e-35 152.1 137 61.3
Gohir.A03G216700 Gossypium hirsutum HOM05D003609 ORTHO05D004185 4.2e-35 151.8 137 60.6
Eucgr.H04822 Eucalyptus grandis HOM05D003609 ORTHO05D004185 5.4e-35 151.4 137 61.3
Hma1.2p1_1418F.1_g282240 Hydrangea macrophylla HOM05D003609 ORTHO05D004185 9.3e-35 150.6 134 63.4
Lj2C325T8 Lonicera japonica HOM05D003609 ORTHO05D004185 9.3e-35 150.6 134 63.4
Oeu015191.1 Olea europaea HOM05D003609 ORTHO05D004185 1.2e-34 150.2 134 62.7
SGA_v2.0_scaffold223G42845 Striga asiatica HOM05D003609 ORTHO05D004185 1.2e-34 150.2 137 61.3
CiPaw.10G086600 Carya illinoinensis HOM05D003609 ORTHO05D004185 1.6e-34 149.8 134 62.7
Duzib132G1150 Durio zibethinus HOM05D003609 ORTHO05D004185 1.6e-34 149.8 134 62.7
ECA236G2324 Erigeron canadensis HOM05D003609 ORTHO05D004185 1.6e-34 149.8 134 63.4
Ah.14g086230 Amaranthus hybridus HOM05D003609 ORTHO05D004185 2.1e-34 149.4 134 62.7
EL10Ac8g19595 Beta vulgaris HOM05D003609 ORTHO05D004185 2.1e-34 149.4 134 61.9
AUR62042468 Chenopodium quinoa HOM05D003609 ORTHO05D004185 2.1e-34 149.4 134 62.7
AUR62042762 Chenopodium quinoa HOM05D003609 ORTHO05D004185 2.1e-34 149.4 134 62.7
Nn7g36935 Nelumbo nucifera HOM05D003609 ORTHO05D004185 2.1e-34 149.4 134 61.9
Hund21559 Selenicereus undatus HOM05D003609 ORTHO05D004185 2.1e-34 149.4 134 62.7
Ciclev10014106m.g Citrus clementina HOM05D003609 ORTHO05D004185 2.7e-34 149.1 134 61.9
Haze_05753 Corylus avellana HOM05D003609 ORTHO05D004185 2.7e-34 149.1 134 61.9
Potri.001G357900 Populus trichocarpa HOM05D003609 ORTHO05D004185 2.7e-34 149.1 134 61.9
Sabra16G0235700 Salix brachista HOM05D003609 ORTHO05D004185 2.7e-34 149.1 134 61.9
SalBow8G0777 Salvia bowleyana HOM05D003609 ORTHO05D004185 2.7e-34 149.1 134 61.9
BcaC04g21393 Brassica carinata HOM05D003609 ORTHO05D004185 3.5e-34 148.7 137 60.6
A09p25340 Brassica napus HOM05D003609 ORTHO05D004185 3.5e-34 148.7 137 60.6
C09p32340 Brassica napus HOM05D003609 ORTHO05D004185 3.5e-34 148.7 137 60.6
BolC9t56079H Brassica oleracea HOM05D003609 ORTHO05D004185 3.5e-34 148.7 137 60.6
BraA09t38116Z Brassica rapa HOM05D003609 ORTHO05D004185 3.5e-34 148.7 137 60.6
Dinv32197 Davidia involucrata HOM05D003609 ORTHO05D004185 3.5e-34 148.7 134 61.9
Nn2g14648 Nelumbo nucifera HOM05D003609 ORTHO05D004185 3.5e-34 148.7 134 61.9
Cpa.g.sc17.69 Carica papaya HOM05D003609 ORTHO05D004185 4.6e-34 148.3 134 61.9
ClCG03G006390 Citrullus lanatus HOM05D003609 ORTHO05D004185 4.6e-34 148.3 134 61.9
MELO3C002793.2 Cucumis melo HOM05D003609 ORTHO05D004185 4.6e-34 148.3 134 61.9
CsaV3_1G037020 Cucumis sativus L. HOM05D003609 ORTHO05D004185 4.6e-34 148.3 134 61.9
HanXRQChr04g0113571 Helianthus annuus HOM05D003609 ORTHO05D004185 4.6e-34 148.3 134 62.7
HanXRQChr15g0481541 Helianthus annuus HOM05D003609 ORTHO05D004185 4.6e-34 148.3 134 62.7
Sed0022224 Sechium edule HOM05D003609 ORTHO05D004185 4.6e-34 148.3 134 61.2
Thecc.02G010900 Theobroma cacao HOM05D003609 ORTHO05D004185 4.6e-34 148.3 134 61.9
TAR626G0448 Trochodendron aralioides HOM05D003609 ORTHO05D004185 4.6e-34 148.3 134 61.2
AL6G49010 Arabidopsis lyrata HOM05D003609 ORTHO05D004185 6.0e-34 147.9 134 61.2
AT4G05420 Arabidopsis thaliana HOM05D003609 ORTHO05D004185 6.0e-34 147.9 134 61.2
MSTRG.16279 Avicennia marina HOM05D003609 ORTHO05D004185 6.0e-34 147.9 134 61.9
EL10Ac9g22433 Beta vulgaris HOM05D003609 ORTHO05D004185 6.0e-34 147.9 134 61.9
Carub.0006s3333 Capsella rubella HOM05D003609 ORTHO05D004185 6.0e-34 147.9 134 61.2
COL.COLO4_17669 Corchorus olitorius HOM05D003609 ORTHO05D004185 6.0e-34 147.9 134 61.2
Thhalv10028374m.g Eutrema salsugineum HOM05D003609 ORTHO05D004185 6.0e-34 147.9 134 61.2
TAR624G1151 Trochodendron aralioides HOM05D003609 ORTHO05D004185 6.0e-34 147.9 134 61.9
Aa31LG9G9160 Aethionema arabicum HOM05D003609 ORTHO05D004185 7.9e-34 147.5 134 61.9
FvH4_3g09700 Fragaria vesca HOM05D003609 ORTHO05D004185 7.9e-34 147.5 134 61.2
FAN11G0451 Fragaria x ananassa HOM05D003609 ORTHO05D004185 7.9e-34 147.5 134 61.2
FAN16G3689 Fragaria x ananassa HOM05D003609 ORTHO05D004185 7.9e-34 147.5 134 61.2
FAN21G1100 Fragaria x ananassa HOM05D003609 ORTHO05D004185 7.9e-34 147.5 134 61.2
FAN25G3439 Fragaria x ananassa HOM05D003609 ORTHO05D004185 7.9e-34 147.5 134 61.2
Prupe.4G088300 Prunus persica HOM05D003609 ORTHO05D004185 7.9e-34 147.5 134 61.9
RcHm_v2.0_Chr5g0015371 Rosa chinensis HOM05D003609 ORTHO05D004185 7.9e-34 147.5 134 61.2
Sp6g03670 Schrenkiella parvula HOM05D003609 ORTHO05D004185 7.9e-34 147.5 134 61.2
THA.LOC104812376 Tarenaya hassleriana HOM05D003609 ORTHO05D004185 7.9e-34 147.5 134 61.9
Cfa000850 Carpinus fangiana HOM05D003609 ORTHO05D004185 1.0e-33 147.1 134 61.9
DCAR_027872 Daucus carota HOM05D003609 ORTHO05D004185 1.0e-33 147.1 134 61.9
Duzib132G0117 Durio zibethinus HOM05D003609 ORTHO05D004185 1.0e-33 147.1 134 61.9
MD00G1109600 Malus domestica HOM05D003609 ORTHO05D004185 1.0e-33 147.1 134 61.2
MD05G1276000 Malus domestica HOM05D003609 ORTHO05D004185 1.0e-33 147.1 134 61.2
PGR031G0855 Punica granatum HOM05D003609 ORTHO05D004185 1.0e-33 147.1 137 59.1
CARHR227680 Cardamine hirsuta HOM05D003609 ORTHO05D004185 1.3e-33 146.7 137 59.1
Lsat_1_v5_gn_7_31981 Lactuca sativa HOM05D003609 ORTHO05D004185 1.3e-33 146.7 134 62.7
Lalb_Chr07g0185651 Lupinus albus HOM05D003609 ORTHO05D004185 1.3e-33 146.7 134 61.2
Medtr8g089380 Medicago truncatula HOM05D003609 ORTHO05D004185 1.3e-33 146.7 134 61.9
CSS0002848 Camellia sinensis var. sinensis HOM05D003609 ORTHO05D004185 1.8e-33 146.4 134 61.2
CANSAT35G1843 Cannabis sativa HOM05D003609 ORTHO05D004185 1.8e-33 146.4 134 61.2
CARHR252160 Cardamine hirsuta HOM05D003609 ORTHO05D004185 1.8e-33 146.4 134 61.9
Duzib248G1499 Durio zibethinus HOM05D003609 ORTHO05D004185 1.8e-33 146.4 134 61.9
Phvul.002G252300 Phaseolus vulgaris HOM05D003609 ORTHO05D004185 1.8e-33 146.4 134 61.2
SHI01957 Sapria himalayana HOM05D003609 ORTHO05D004185 1.8e-33 146.4 134 59.7
Sp7g19180 Schrenkiella parvula HOM05D003609 ORTHO05D004185 1.8e-33 146.4 137 58.4
VMungo0251G1043 Vigna mungo HOM05D003609 ORTHO05D004185 1.8e-33 146.4 134 61.2
TPR.G6260 Trifolium pratense HOM05D003609 ORTHO05D004185 2.3e-33 146.0 134 60.4
Zm00001eb297320 Zea mays HOM05D003609 ORTHO05D004185 2.3e-33 146.0 137 58.4
Zm00001eb345240 Zea mays HOM05D003609 ORTHO05D004185 2.3e-33 146.0 137 58.4
ATR0594G240 Amborella trichopoda HOM05D003609 ORTHO05D004185 3.0e-33 145.6 137 59.9
Aqoxy1G01653 Aquilegia oxysepala HOM05D003609 ORTHO05D004185 3.0e-33 145.6 134 59.7
MBI18_g10584_MAGBIO Magnolia biondii HOM05D003609 ORTHO05D004185 3.0e-33 145.6 134 61.9
Os05g0592400 Oryza sativa ssp. japonica HOM05D003609 ORTHO05D004185 3.0e-33 145.6 134 59.7
BcaC01g00716 Brassica carinata HOM05D003609 ORTHO05D004185 3.9e-33 145.2 137 59.1
A08p15280 Brassica napus HOM05D003609 ORTHO05D004185 3.9e-33 145.2 137 59.1
C03p83520 Brassica napus HOM05D003609 ORTHO05D004185 3.9e-33 145.2 137 59.1
BraA08t33506Z Brassica rapa HOM05D003609 ORTHO05D004185 3.9e-33 145.2 137 59.1
Psat7g060520 Pisum sativum HOM05D003609 ORTHO05D004185 3.9e-33 145.2 134 60.4
QL11p001509 Quercus lobata HOM05D003609 ORTHO05D004185 3.9e-33 145.2 134 59.7
TWI73G0261 Tripterygium wilfordii HOM05D003609 ORTHO05D004185 3.9e-33 145.2 134 60.4
GSVIVG01021587001 Vitis vinifera HOM05D003609 ORTHO05D004185 3.9e-33 145.2 134 61.2
AT4G21100 Arabidopsis thaliana HOM05D003609 ORTHO05D004185 5.1e-33 144.8 134 59.0
arahy.Tifrunner.gnm1.ann1.UWD6C2 Arachis hypogaea HOM05D003609 ORTHO05D004185 5.1e-33 144.8 134 60.4
HPP92_020750 Vanilla planifolia HOM05D003609 ORTHO05D004185 5.1e-33 144.8 134 59.0
Actinidia07464 Actinidia chinensis HOM05D003609 ORTHO05D004185 6.7e-33 144.4 134 60.4
AL7G33030 Arabidopsis lyrata HOM05D003609 ORTHO05D004185 6.7e-33 144.4 134 59.7
Carub.0007s2033 Capsella rubella HOM05D003609 ORTHO05D004185 6.7e-33 144.4 134 59.7
Ca_17799_v3 Cicer arietinum L. HOM05D003609 ORTHO05D004185 6.7e-33 144.4 134 59.7
Migut.M01878 Erythranthe guttata HOM05D003609 ORTHO05D004185 6.7e-33 144.4 134 61.2
Lj4g0015667 Lotus japonicus HOM05D003609 ORTHO05D004185 6.7e-33 144.4 134 60.4
Manes.06G061000 Manihot esculenta HOM05D003609 ORTHO05D004185 6.7e-33 144.4 134 59.7
QL07p044690 Quercus lobata HOM05D003609 ORTHO05D004185 6.7e-33 144.4 134 59.0
CSS0039412 Camellia sinensis var. sinensis HOM05D003609 ORTHO05D004185 8.7e-33 144.1 134 60.4
Mapoly0054s0064 Marchantia polymorpha HOM05D003609 ORTHO05D004185 8.7e-33 144.1 137 58.4
PSO541G5911 Papaver somniferum HOM05D003609 ORTHO05D004185 1.1e-32 143.7 134 59.7
PSO675G5242 Papaver somniferum HOM05D003609 ORTHO05D004185 1.1e-32 143.7 134 59.7
CDE01G0431 Ceratophyllum demersum HOM05D003609 ORTHO05D004185 1.5e-32 143.3 134 59.7
CDE02G3832 Ceratophyllum demersum HOM05D003609 ORTHO05D004185 1.5e-32 143.3 134 59.7
Thhalv10024273m.g Eutrema salsugineum HOM05D003609 ORTHO05D004185 2.5e-32 142.5 137 57.7
Glyma.U031908 Glycine max HOM05D003609 ORTHO05D004185 3.3e-32 142.1 134 59.7
SMO119G0053 Selaginella moellendorffii HOM05D003609 ORTHO05D004185 4.3e-32 141.7 134 57.5
arahy.Tifrunner.gnm1.ann1.1CC5MB Arachis hypogaea HOM05D003609 ORTHO05D004185 5.6e-32 141.4 144 56.2
Lj6g0025210 Lotus japonicus HOM05D003609 ORTHO05D004185 5.6e-32 141.4 134 58.2
BolC3t20633H Brassica oleracea HOM05D003609 ORTHO05D004185 7.4e-32 141.0 146 55.5
vmacro03407 Vaccinium macrocarpon HOM05D003609 ORTHO05D004185 7.4e-32 141.0 134 59.7
Atru.chr10.957 Acer truncatum HOM05D003609 ORTHO05D004185 9.6e-32 140.6 134 58.2
Rhsim13G0119500 Rhododendron simsii HOM05D003609 ORTHO05D004185 2.1e-31 139.4 134 59.0
CBR_g19725 Chara braunii HOM05D003609 ORTHO05D004185 1.4e-30 136.7 134 56.7
Actinidia23239 Actinidia chinensis HOM05D003609 ORTHO05D004185 3.1e-30 135.6 131 59.5
Pp3c15_18160 Physcomitrium patens HOM05D003609 ORTHO05D004185 1.2e-29 133.7 137 55.5
Pp3c9_22270 Physcomitrium patens HOM05D003609 ORTHO05D004185 3.4e-29 132.1 137 55.5
Atru.chr10.947 Acer truncatum HOM05D003609 ORTHO05D004185 5.8e-29 131.3 133 54.9
Sc17g0004700 Simmondsia chinensis HOM05D003609 ORTHO05D004185 7.6e-29 131.0 106 66.0
Atru.chr10.953 Acer truncatum HOM05D003609 ORTHO05D004185 1.3e-28 130.2 134 55.2
QL11p001978 Quercus lobata HOM05D003609 ORTHO05D004185 4.9e-28 128.3 134 53.7
MCO15G425 Micromonas commoda HOM05D003609 ORTHO05D004185 3.0e-25 119.0 142 47.9
arahy.Tifrunner.gnm1.ann1.92D3LZ Arachis hypogaea HOM05D003609 ORTHO05D004185 5.1e-25 118.2 134 51.5
PGSC0003DMG400003744 Solanum tuberosum HOM05D003609 ORTHO05D004185 5.1e-25 118.2 100 61.0
Psat0s2295g0160 Pisum sativum HOM05D003609 ORTHO05D004185 8.7e-25 117.5 97 62.9
Peaxi162Scf00296g01317 Petunia axillaris HOM05D003609 ORTHO05D004185 4.3e-24 115.2 136 48.5
CARHR131210 Cardamine hirsuta HOM05D003609 ORTHO05D004185 9.0e-22 107.5 133 48.9
PRCOL_00006815 Prasinoderma coloniale HOM05D003609 ORTHO05D004185 2.2e-20 102.8 138 44.9
Glyma.12G078302 Glycine max HOM05D003609 ORTHO05D004185 4.2e-19 98.6 95 57.9
Cre10.g432000 Chlamydomonas reinhardtii HOM05D003609 ORTHO05D004185 2.4e-14 82.8 150 35.3
CDE01G0609 Ceratophyllum demersum HOM05D003609 ORTHO05D004185 1.2e-13 80.5 67 61.2
Migut.J01122 Erythranthe guttata HOM05D003609 ORTHO05D004185 2.7e-10 69.3 101 44.6
BolC3t17691H Brassica oleracea HOM05D003609 ORTHO05D004185 6.7e-09 64.7 129 34.9
Haze_26269 Corylus avellana HOM05D003609 ORTHO05D004185 5.7e-08 61.6 135 31.1
Lsat_1_v5_gn_8_16520 Lactuca sativa HOM05D003609 ORTHO05D004185 6.9e-06 54.7 55 56.4


User provided reference genes

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