Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1676.1 Capsicum annuum HOM05D005876 ORTHO05D007326 1.0e-160 570.1 297 100.0
Sopen09g002270 Solanum pennellii HOM05D005876 ORTHO05D007326 4.3e-135 485.0 310 83.9
Solyc09g007370.4 Solanum lycopersicum HOM05D005876 ORTHO05D007326 9.5e-135 483.8 310 83.9
PGSC0003DMG400001766 Solanum tuberosum HOM05D005876 ORTHO05D007326 4.0e-133 478.4 310 82.3
Nitab4.5_0005274g0030 Nicotiana tabacum HOM05D005876 ORTHO05D007326 3.3e-103 379.0 408 58.3
Nitab4.5_0001763g0100 Nicotiana tabacum HOM05D005876 ORTHO05D007326 4.3e-103 378.6 314 70.4
Peaxi162Scf00005g04511 Petunia axillaris HOM05D005876 ORTHO05D007326 7.6e-100 367.9 251 79.3
MSTRG.5723 Avicennia marina HOM05D005876 ORTHO05D007326 2.2e-91 339.7 299 61.9
CSS0011524 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 1.1e-90 337.4 297 59.3
Migut.J00418 Erythranthe guttata HOM05D005876 ORTHO05D007326 6.7e-88 328.2 297 59.6
Cc11_g02990 Coffea canephora HOM05D005876 ORTHO05D007326 1.9e-87 326.6 294 58.5
Hma1.2p1_0350F.1_g132760 Hydrangea macrophylla HOM05D005876 ORTHO05D007326 6.2e-86 321.6 309 57.3
SalBow3G2410 Salvia bowleyana HOM05D005876 ORTHO05D007326 3.1e-85 319.3 286 59.1
SalBow3G3945 Salvia bowleyana HOM05D005876 ORTHO05D007326 6.9e-85 318.2 286 59.1
CANSAT80G1885 Cannabis sativa HOM05D005876 ORTHO05D007326 9.0e-85 317.8 294 58.5
Glyma.11G012100 Glycine max HOM05D005876 ORTHO05D007326 4.5e-84 315.5 301 58.1
Duzib093G1198 Durio zibethinus HOM05D005876 ORTHO05D007326 5.8e-84 315.1 298 57.4
Actinidia13103 Actinidia chinensis HOM05D005876 ORTHO05D007326 8.4e-83 311.2 286 59.8
Dinv37257 Davidia involucrata HOM05D005876 ORTHO05D007326 2.5e-82 309.7 297 56.6
Thecc.05G054500 Theobroma cacao HOM05D005876 ORTHO05D007326 4.2e-82 308.9 297 55.9
Prupe.4G230000 Prunus persica HOM05D005876 ORTHO05D007326 1.2e-81 307.4 303 53.8
CSS0006806 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 6.0e-81 305.1 230 64.8
LjContig00222g0022274 Lotus japonicus HOM05D005876 ORTHO05D007326 2.3e-80 303.1 299 55.9
Lj1g0007669 Lotus japonicus HOM05D005876 ORTHO05D007326 3.0e-80 302.8 299 55.9
SGA_v2.0_scaffold75G24879 Striga asiatica HOM05D005876 ORTHO05D007326 6.7e-80 301.6 304 54.9
MD12G1123900 Malus domestica HOM05D005876 ORTHO05D007326 7.4e-79 298.1 305 51.5
GSVIVG01025628001 Vitis vinifera HOM05D005876 ORTHO05D007326 1.3e-78 297.4 304 56.9
TAR375G0626 Trochodendron aralioides HOM05D005876 ORTHO05D007326 2.8e-78 296.2 308 54.5
Ciclev10012269m.g Citrus clementina HOM05D005876 ORTHO05D007326 4.8e-78 295.4 302 51.7
Gohir.A01G216800 Gossypium hirsutum HOM05D005876 ORTHO05D007326 9.0e-77 291.2 295 53.9
FAN02G3306 Fragaria x ananassa HOM05D005876 ORTHO05D007326 5.8e-76 288.5 297 52.2
Atru.chr8.2559 Acer truncatum HOM05D005876 ORTHO05D007326 1.7e-75 287.0 308 52.6
vmacro08700 Vaccinium macrocarpon HOM05D005876 ORTHO05D007326 2.2e-75 286.6 233 62.2
Gorai.002G249900 Gossypium raimondii HOM05D005876 ORTHO05D007326 2.9e-75 286.2 295 53.9
Potri.001G033900 Populus trichocarpa HOM05D005876 ORTHO05D007326 6.5e-75 285.0 300 52.3
Manes.09G081419 Manihot esculenta HOM05D005876 ORTHO05D007326 2.5e-74 283.1 293 54.3
Nitab4.5_0000669g0240 Nicotiana tabacum HOM05D005876 ORTHO05D007326 4.2e-74 282.3 325 57.8
Gohir.D01G205600 Gossypium hirsutum HOM05D005876 ORTHO05D007326 7.1e-74 281.6 294 53.4
CiPaw.09G179800 Carya illinoinensis HOM05D005876 ORTHO05D007326 7.9e-73 278.1 312 51.6
MBI19_g11838_MAGBIO Magnolia biondii HOM05D005876 ORTHO05D007326 1.3e-72 277.3 301 52.2
Phvul.002G038100 Phaseolus vulgaris HOM05D005876 ORTHO05D007326 3.0e-72 276.2 301 52.8
QL07p024280 Quercus lobata HOM05D005876 ORTHO05D007326 3.9e-72 275.8 293 51.5
FAN14G3435 Fragaria x ananassa HOM05D005876 ORTHO05D007326 1.9e-71 273.5 314 49.4
Lsat_1_v5_gn_3_120281 Lactuca sativa HOM05D005876 ORTHO05D007326 2.2e-70 270.0 296 54.1
Nn2g10678 Nelumbo nucifera HOM05D005876 ORTHO05D007326 2.2e-70 270.0 304 50.3
QL03p054300 Quercus lobata HOM05D005876 ORTHO05D007326 1.1e-69 267.7 293 50.9
Lalb_Chr01g0022971 Lupinus albus HOM05D005876 ORTHO05D007326 1.4e-69 267.3 289 51.2
MD04G1104000 Malus domestica HOM05D005876 ORTHO05D007326 1.4e-69 267.3 309 49.8
RcHm_v2.0_Chr3g0468881 Rosa chinensis HOM05D005876 ORTHO05D007326 1.4e-69 267.3 301 49.2
ECA238G3410 Erigeron canadensis HOM05D005876 ORTHO05D007326 6.9e-69 265.0 298 50.7
FvH4_6g15400 Fragaria vesca HOM05D005876 ORTHO05D007326 1.2e-68 264.2 303 48.8
Sc23g0005710 Simmondsia chinensis HOM05D005876 ORTHO05D007326 7.7e-68 261.5 298 49.3
TPR.G38017 Trifolium pratense HOM05D005876 ORTHO05D007326 1.3e-67 260.8 315 48.6
HanXRQChr07g0195281 Helianthus annuus HOM05D005876 ORTHO05D007326 2.9e-67 259.6 284 51.4
Nitab4.5_0002614g0010 Nicotiana tabacum HOM05D005876 ORTHO05D007326 6.5e-67 258.5 297 57.6
PSO063G0740 Papaver somniferum HOM05D005876 ORTHO05D007326 1.9e-66 256.9 283 52.3
TAR633G1288 Trochodendron aralioides HOM05D005876 ORTHO05D007326 5.5e-66 255.4 305 49.5
Eucgr.D00282 Eucalyptus grandis HOM05D005876 ORTHO05D007326 7.2e-66 255.0 294 51.0
Peaxi162Scf01604g00016 Petunia axillaris HOM05D005876 ORTHO05D007326 9.4e-66 254.6 264 54.5
Cfa017510 Carpinus fangiana HOM05D000666 ORTHO05D001727 5.1e-64 248.8 268 54.1
VMungo1215G0672 Vigna mungo HOM05D005876 ORTHO05D007326 8.8e-64 248.1 261 52.9
THA.LOC104826952 Tarenaya hassleriana HOM05D005876 ORTHO05D007326 1.1e-63 247.7 296 47.3
ATR0618G001 Amborella trichopoda HOM05D005876 ORTHO05D007326 2.0e-63 246.9 302 48.0
CDE05G1905 Ceratophyllum demersum HOM05D005876 ORTHO05D007326 2.0e-63 246.9 233 54.1
AT2G43190 Arabidopsis thaliana HOM05D005876 ORTHO05D007326 4.3e-63 245.7 297 48.5
Haze_20644 Corylus avellana HOM05D005876 ORTHO05D007326 7.4e-63 245.0 293 50.2
Aa31LG1G25010 Aethionema arabicum HOM05D005876 ORTHO05D007326 9.7e-63 244.6 294 48.6
TWI74G1051 Tripterygium wilfordii HOM05D005876 ORTHO05D007326 9.7e-63 244.6 274 50.4
Psat0s769g0080 Pisum sativum HOM05D005876 ORTHO05D007326 1.7e-62 243.8 312 48.1
EL10Ac7g17355 Beta vulgaris HOM05D005876 ORTHO05D007326 4.8e-62 242.3 298 48.7
CARHR138250 Cardamine hirsuta HOM05D005876 ORTHO05D007326 8.2e-62 241.5 294 46.6
Carub.0004s2566 Capsella rubella HOM05D005876 ORTHO05D007326 1.1e-61 241.1 296 48.3
DCAR_009286 Daucus carota HOM05D005876 ORTHO05D007326 1.8e-61 240.4 299 47.2
AL4G41850 Arabidopsis lyrata HOM05D005876 ORTHO05D007326 4.1e-61 239.2 295 47.1
Lj2C107T12 Lonicera japonica HOM05D005876 ORTHO05D007326 9.1e-61 238.0 268 51.1
FAN09G4005 Fragaria x ananassa HOM05D005876 ORTHO05D007326 3.8e-59 232.6 282 47.9
Sabra01G0024100 Salix brachista HOM05D001063 ORTHO05D000986 3.2e-58 229.6 283 47.7
Sed0002034 Sechium edule HOM05D005876 ORTHO05D007326 4.2e-58 229.2 296 46.3
Os05g0472300 Oryza sativa ssp. japonica HOM05D005876 ORTHO05D007326 5.5e-58 228.8 296 44.9
HPP92_015422 Vanilla planifolia HOM05D005876 ORTHO05D007326 1.8e-56 223.8 296 41.6
Sp4g25310 Schrenkiella parvula HOM05D005876 ORTHO05D007326 2.3e-56 223.4 297 45.8
arahy.Tifrunner.gnm1.ann1.SSK647 Arachis hypogaea HOM05D005876 ORTHO05D007326 3.0e-56 223.0 276 48.2
Cpa.g.sc45.33 Carica papaya HOM05D005876 ORTHO05D007326 3.0e-56 223.0 298 47.0
Thhalv10001741m.g Eutrema salsugineum HOM05D005876 ORTHO05D007326 3.0e-56 223.0 220 53.2
arahy.Tifrunner.gnm1.ann1.09MUKR Arachis hypogaea HOM05D005876 ORTHO05D007326 5.1e-56 222.2 276 47.5
Aqoxy4G03207 Aquilegia oxysepala HOM05D005876 ORTHO05D007326 2.0e-55 220.3 309 41.4
PSO063G1014 Papaver somniferum HOM05D005876 ORTHO05D007326 1.3e-54 217.6 272 48.9
CsaV3_3G035590 Cucumis sativus L. HOM05D005876 ORTHO05D007326 1.7e-54 217.2 298 45.3
Zm00001eb290190 Zea mays HOM05D005876 ORTHO05D007326 1.7e-54 217.2 300 44.0
BolC4t22063H Brassica oleracea HOM05D005876 ORTHO05D007326 2.2e-54 216.9 217 52.5
MELO3C009318.2 Cucumis melo HOM05D005876 ORTHO05D007326 4.8e-54 215.7 301 45.5
A05p03670 Brassica napus HOM05D005876 ORTHO05D007326 6.3e-54 215.3 217 53.0
BraA05t19352Z Brassica rapa HOM05D005876 ORTHO05D007326 1.1e-53 214.5 217 53.0
HPP92_026974 Vanilla planifolia HOM05D005876 ORTHO05D007326 3.1e-53 213.0 291 41.2
ClCG10G020530 Citrullus lanatus HOM05D005876 ORTHO05D007326 5.3e-53 212.2 279 46.6
COL.COLO4_06720 Corchorus olitorius HOM05D005876 ORTHO05D007326 7.0e-53 211.8 230 53.5
Medtr5g007880 Medicago truncatula HOM05D005876 ORTHO05D007326 4.5e-52 209.1 312 42.9
C04p04270 Brassica napus HOM05D005876 ORTHO05D007326 2.9e-51 206.5 298 42.6
PGSC0003DMG400004235 Solanum tuberosum HOM05D005876 ORTHO05D007326 1.1e-50 204.5 264 53.4
Ca_24451_v3 Cicer arietinum L. HOM05D005876 ORTHO05D007326 1.9e-50 203.8 276 46.4
AUR62040047 Chenopodium quinoa HOM05D005876 ORTHO05D007326 7.2e-50 201.8 262 49.2
Oeu060085.1 Olea europaea HOM05D005876 ORTHO05D007326 9.7e-47 191.4 267 44.9
SEGI_25369 Sequoiadendron giganteum HOM05D005876 ORTHO05D007326 1.1e-45 188.0 222 44.6
Duzib106G1607 Durio zibethinus HOM05D005876 ORTHO05D007326 1.6e-44 184.1 235 47.7
unitig_32.g11040 Utricularia gibba HOM05D005876 ORTHO05D007326 1.7e-43 180.6 291 40.9
Zm00001eb270830 Zea mays HOM05D005876 ORTHO05D007326 3.2e-42 176.4 303 39.3
TAR636G2100 Trochodendron aralioides HOM05D005876 ORTHO05D007326 5.5e-42 175.6 129 62.0
Glyma.01G229300 Glycine max HOM05D005876 ORTHO05D007326 3.6e-41 172.9 132 61.4
SHI12568 Sapria himalayana HOM05D005876 ORTHO05D007326 5.7e-39 165.6 186 51.6
Ah.16g107680 Amaranthus hybridus HOM05D005876 ORTHO05D007326 4.5e-36 156.0 227 43.6
Pp3c22_13580 Physcomitrium patens HOM05D005876 ORTHO05D007326 1.8e-32 144.1 193 41.5
PGR083G2396 Punica granatum HOM05D005876 ORTHO05D007326 1.2e-31 141.4 234 41.0
Mapoly0065s0033 Marchantia polymorpha HOM05D005876 ORTHO05D007326 5.7e-31 139.0 299 33.1
Gorai.004G066200 Gossypium raimondii HOM05D005876 ORTHO05D007326 5.4e-29 132.5 105 57.1
Psat4g011240 Pisum sativum HOM05D005876 ORTHO05D007326 5.9e-28 129.0 100 64.0
TPR.G5312 Trifolium pratense HOM05D005876 ORTHO05D007326 1.3e-27 127.9 137 46.7
Sc15g0002680 Simmondsia chinensis HOM05D005876 ORTHO05D007326 1.9e-26 124.0 191 44.0
AagrBONN_evm.TU.Sc2ySwM_117.3742 Anthoceros agrestis HOM05D005876 ORTHO05D007326 2.8e-25 120.2 260 32.7
SMO302G0051 Selaginella moellendorffii HOM05D005876 ORTHO05D007326 2.0e-23 114.0 292 32.2
Zm00001eb286610 Zea mays HOM05D005876 ORTHO05D007326 6.3e-22 109.0 112 50.0
Dinv08367 Davidia involucrata HOM05D005876 ORTHO05D007326 4.5e-20 102.8 64 76.6
Dinv35712 Davidia involucrata HOM05D005876 ORTHO05D007326 4.5e-20 102.8 64 76.6
SMO353G0015 Selaginella moellendorffii HOM05D005876 ORTHO05D007326 2.8e-17 93.6 294 28.6
Oeu029421.1 Olea europaea HOM05D005876 ORTHO05D007326 4.7e-17 92.8 90 57.8
TPR.G5314 Trifolium pratense HOM05D000002 ORTHO05D000047 9.2e-13 78.6 64 59.4
Cfa025603 Carpinus fangiana HOM05D005876 ORTHO05D007326 1.8e-08 64.3 154 27.9
CBR_g48398 Chara braunii HOM05D005876 ORTHO05D007326 1.8e-08 64.3 144 31.2


User provided reference genes

Program Settings