Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1644.8 Capsicum annuum HOM05D017496 ORTHO05D003292 6.8e-165 583.9 301 100.0
CAN.G2097.2 Capsicum annuum HOM05D017496 ORTHO05D003292 2.8e-134 482.3 291 86.3
CAN.G1470.1 Capsicum annuum HOM05D017496 ORTHO05D003292 1.0e-123 447.2 239 93.7
CAN.G1644.3 Capsicum annuum HOM05D017496 ORTHO05D003292 8.4e-123 444.1 239 93.3
CAN.G2007.3 Capsicum annuum HOM05D000344 ORTHO05D003292 2.0e-84 316.6 171 91.2
CAN.G1216.8 Capsicum annuum HOM05D017496 ORTHO05D003292 3.5e-84 315.8 225 78.7
CAN.G1470.3 Capsicum annuum HOM05D000344 ORTHO05D003292 3.3e-66 256.1 336 48.5
CAN.G1644.4 Capsicum annuum HOM05D000344 ORTHO05D003292 1.6e-57 227.3 338 47.3
CAN.G1216.12 Capsicum annuum HOM05D000344 ORTHO05D003292 1.4e-56 224.2 222 59.0
CAN.G2230.1 Capsicum annuum HOM05D000344 ORTHO05D003292 2.6e-55 219.9 381 41.7
CAN.G1644.9 Capsicum annuum HOM05D000344 ORTHO05D003292 2.2e-54 216.9 269 52.8
CAN.G2931.1 Capsicum annuum HOM05D000344 ORTHO05D003292 2.0e-39 167.2 256 47.7
CAN.G1644.5 Capsicum annuum HOM05D000344 ORTHO05D003292 3.4e-39 166.4 289 44.6
CAN.G1216.10 Capsicum annuum HOM05D017496 ORTHO05D003292 2.4e-37 160.2 130 70.0
CAN.G500.39 Capsicum annuum HOM05D000344 ORTHO05D003292 2.4e-37 160.2 215 49.8
CAN.G2007.2 Capsicum annuum HOM05D017496 ORTHO05D003292 1.6e-36 157.5 121 70.2
CAN.G1644.7 Capsicum annuum HOM05D000344 ORTHO05D003292 1.0e-35 154.8 122 70.5
CAN.G1644.2 Capsicum annuum HOM05D000344 ORTHO05D003292 2.4e-32 143.7 306 36.9
CAN.G2526.1 Capsicum annuum HOM05D000344 ORTHO05D003292 1.9e-29 134.0 268 39.6
CAN.G500.45 Capsicum annuum HOM05D000344 ORTHO05D008629 1.2e-28 131.3 95 73.7
CAN.G524.32 Capsicum annuum HOM05D007908 ORTHO05D003292 6.0e-28 129.0 98 71.4
CAN.G1216.9 Capsicum annuum HOM05D000344 ORTHO05D003292 3.6e-25 119.8 199 41.2
Nitab4.5_0007629g0030 Nicotiana tabacum HOM05D000344 ORTHO05D003292 3.8e-22 109.8 364 30.2
CAN.G1470.2 Capsicum annuum HOM05D000344 ORTHO05D003292 6.0e-20 102.4 227 35.2
CAN.G1470.4 Capsicum annuum HOM05D000344 ORTHO05D003292 1.3e-19 101.3 290 33.1
CAN.G1644.6 Capsicum annuum HOM05D000344 ORTHO05D003292 8.1e-17 92.0 53 81.1
CAN.G524.34 Capsicum annuum HOM05D000344 ORTHO05D003292 8.1e-17 92.0 72 65.3
CAN.G2097.3 Capsicum annuum HOM05D000344 ORTHO05D003292 2.4e-16 90.5 224 32.1
CAN.G2007.1 Capsicum annuum HOM05D000344 ORTHO05D003292 6.9e-16 89.0 97 53.6
Nitab4.5_0000804g0190 Nicotiana tabacum HOM05D000344 ORTHO05D003292 2.6e-15 87.0 405 25.4
CAN.G757.6 Capsicum annuum HOM05D000888 ORTHO05D000740 9.9e-15 85.1 83 53.0
Sed0023966 Sechium edule HOM05D000344 ORTHO05D003292 9.3e-13 78.6 62 58.1
Gohir.A03G000400 Gossypium hirsutum HOM05D000344 ORTHO05D003292 1.6e-12 77.8 68 57.4
ClCG10G001570 Citrullus lanatus HOM05D000344 ORTHO05D003292 2.1e-12 77.4 65 56.9
MELO3C013849.2 Cucumis melo HOM05D000344 ORTHO05D003292 2.1e-12 77.4 65 56.9
CsaV3_3G001680 Cucumis sativus L. HOM05D000344 ORTHO05D003292 2.1e-12 77.4 65 56.9
Gohir.D11G029400 Gossypium hirsutum HOM05D000344 ORTHO05D003292 2.1e-12 77.4 83 49.4
Gorai.007G032000 Gossypium raimondii HOM05D000344 ORTHO05D003292 2.1e-12 77.4 83 49.4
Gorai.011G148500 Gossypium raimondii HOM05D000344 ORTHO05D003292 2.1e-12 77.4 83 49.4
Gohir.A11G030700 Gossypium hirsutum HOM05D000344 ORTHO05D003292 2.7e-12 77.0 83 49.4
Haze_08220 Corylus avellana HOM05D000344 ORTHO05D003292 4.6e-12 76.3 64 57.8
Potri.001G142000 Populus trichocarpa HOM05D000344 ORTHO05D003292 6.0e-12 75.9 52 67.3
Nitab4.5_0005013g0010 Nicotiana tabacum HOM05D000344 ORTHO05D003292 1.0e-11 75.1 359 26.5
Peaxi162Scf00045g00007 Petunia axillaris HOM05D000344 ORTHO05D003292 1.0e-11 75.1 97 44.3
Cfa012444 Carpinus fangiana HOM05D000344 ORTHO05D003292 1.3e-11 74.7 52 65.4
Gohir.D03G171800 Gossypium hirsutum HOM05D000344 ORTHO05D003292 1.3e-11 74.7 52 65.4
QL12p005097 Quercus lobata HOM05D000344 ORTHO05D003292 1.3e-11 74.7 73 53.4
Sabra01G0110400 Salix brachista HOM05D000344 ORTHO05D003292 1.3e-11 74.7 52 67.3
Sed0017947 Sechium edule HOM05D000344 ORTHO05D003292 1.3e-11 74.7 65 55.4
Gorai.003G182400 Gossypium raimondii HOM05D000344 ORTHO05D003292 1.8e-11 74.3 52 65.4
Sabra03G0061800 Salix brachista HOM05D000344 ORTHO05D003292 1.8e-11 74.3 52 63.5
CSS0024654 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D003292 2.3e-11 73.9 86 48.8
CSS0031291 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D003292 2.3e-11 73.9 86 48.8
Peaxi162Scf00460g00014 Petunia axillaris HOM05D000344 ORTHO05D003292 2.3e-11 73.9 53 64.2
Dinv25218 Davidia involucrata HOM05D000344 ORTHO05D003292 3.0e-11 73.6 52 61.5
FAN13G0520 Fragaria x ananassa HOM05D000344 ORTHO05D003292 3.0e-11 73.6 53 62.3
Hma1.2p1_0574F.1_g181470 Hydrangea macrophylla HOM05D000344 ORTHO05D003292 3.0e-11 73.6 52 65.4
Potri.003G092400 Populus trichocarpa HOM05D000344 ORTHO05D003292 3.0e-11 73.6 52 63.5
Duzib205G0116 Durio zibethinus HOM05D000344 ORTHO05D003292 3.9e-11 73.2 65 56.9
vmacro00327 Vaccinium macrocarpon HOM05D000344 ORTHO05D003292 3.9e-11 73.2 52 63.5
GSVIVG01013154001 Vitis vinifera HOM05D000344 ORTHO05D003292 3.9e-11 73.2 57 59.6
Sopen08g025480 Solanum pennellii HOM05D000344 ORTHO05D003292 5.1e-11 72.8 53 62.3
Atru.chr6.1699 Acer truncatum HOM05D000344 ORTHO05D003292 6.7e-11 72.4 52 63.5
TAR375G1111 Trochodendron aralioides HOM05D000344 ORTHO05D003292 6.7e-11 72.4 55 60.0
Actinidia14804 Actinidia chinensis HOM05D000344 ORTHO05D003292 8.7e-11 72.0 53 62.3
Solyc08g076910.3 Solanum lycopersicum HOM05D000344 ORTHO05D003292 1.1e-10 71.6 53 60.4
PGSC0003DMG400017516 Solanum tuberosum HOM05D000344 ORTHO05D003292 1.1e-10 71.6 53 60.4
CAN.G298.10 Capsicum annuum HOM05D000344 ORTHO05D003292 1.5e-10 71.2 53 62.3
MD06G1034700 Malus domestica HOM05D000344 ORTHO05D003292 1.5e-10 71.2 66 53.0
Actinidia09191 Actinidia chinensis HOM05D000344 ORTHO05D003292 1.9e-10 70.9 52 61.5
Duzib068G0882 Durio zibethinus HOM05D000344 ORTHO05D003292 1.9e-10 70.9 52 63.5
MD16G1273900 Malus domestica HOM05D000344 ORTHO05D003292 1.9e-10 70.9 53 58.5
Oeu006254.1 Olea europaea HOM05D000344 ORTHO05D003292 1.9e-10 70.9 52 61.5
CiPaw.11G093800 Carya illinoinensis HOM05D000344 ORTHO05D003292 2.5e-10 70.5 65 55.4
Cc08_g02820 Coffea canephora HOM05D000344 ORTHO05D003292 2.5e-10 70.5 85 43.5
CSS0001118 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D003292 3.3e-10 70.1 53 60.4
SalBow6G1214 Salvia bowleyana HOM05D000344 ORTHO05D003292 3.3e-10 70.1 54 57.4
AUR62007296 Chenopodium quinoa HOM05D000344 ORTHO05D003292 4.3e-10 69.7 74 50.0
Prupe.5G035200 Prunus persica HOM05D000344 ORTHO05D003292 4.3e-10 69.7 52 59.6
Rhsim11G0015700 Rhododendron simsii HOM05D000344 ORTHO05D003292 4.3e-10 69.7 52 59.6
Thecc.03G227100 Theobroma cacao HOM05D000344 ORTHO05D003292 4.3e-10 69.7 65 53.8
FAN04G0675 Fragaria x ananassa HOM05D000344 ORTHO05D003292 5.6e-10 69.3 53 58.5
FAN08G1798 Fragaria x ananassa HOM05D000344 ORTHO05D003292 5.6e-10 69.3 53 60.4
AUR62018709 Chenopodium quinoa HOM05D000344 ORTHO05D003292 7.4e-10 68.9 60 56.7
Ciclev10013784m.g Citrus clementina HOM05D000344 ORTHO05D003292 7.4e-10 68.9 53 60.4
MBI04_g23596_MAGBIO Magnolia biondii HOM05D000344 ORTHO05D003292 7.4e-10 68.9 55 58.2
Rhsim07G0127600 Rhododendron simsii HOM05D000344 ORTHO05D003292 7.4e-10 68.9 84 42.9
DCAR_008266 Daucus carota HOM05D000344 ORTHO05D003292 9.6e-10 68.6 52 57.7
ECA246G4772 Erigeron canadensis HOM05D000344 ORTHO05D003292 9.6e-10 68.6 53 54.7
Lsat_1_v5_gn_3_17880 Lactuca sativa HOM05D000344 ORTHO05D003292 9.6e-10 68.6 73 45.2
SGA_v2.0_scaffold198G41098 Striga asiatica HOM05D000344 ORTHO05D003292 9.6e-10 68.6 53 58.5
SGA_v2.0_scaffold36G14310 Striga asiatica HOM05D000344 ORTHO05D003292 9.6e-10 68.6 76 44.7
FvH4_5g22140 Fragaria vesca HOM05D000344 ORTHO05D003292 1.6e-09 67.8 52 59.6
PGR031G0806 Punica granatum HOM05D000344 ORTHO05D003292 1.6e-09 67.8 52 61.5
COL.COLO4_17026 Corchorus olitorius HOM05D000344 ORTHO05D003292 2.1e-09 67.4 58 58.6
MSTRG.12161 Avicennia marina HOM05D000344 ORTHO05D003292 2.8e-09 67.0 52 59.6
Cpa.g.sc227.7 Carica papaya HOM05D000344 ORTHO05D003292 2.8e-09 67.0 72 47.2
RcHm_v2.0_Chr7g0209791 Rosa chinensis HOM05D000344 ORTHO05D003292 2.8e-09 67.0 76 47.4
HanXRQChr17g0536271 Helianthus annuus HOM05D000344 ORTHO05D003292 3.7e-09 66.6 50 56.0
Nn1g08036 Nelumbo nucifera HOM05D000344 ORTHO05D003292 3.7e-09 66.6 72 45.8
unitig_37.g12115 Utricularia gibba HOM05D000344 ORTHO05D003292 3.7e-09 66.6 91 42.9
FAN18G2803 Fragaria x ananassa HOM05D000344 ORTHO05D003292 4.8e-09 66.2 52 57.7
HanXRQChr06g0167511 Helianthus annuus HOM05D000344 ORTHO05D003292 4.8e-09 66.2 50 56.0
CSS0028098 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D003292 6.2e-09 65.9 59 55.9
MBI15_g01593_MAGBIO Magnolia biondii HOM05D000344 ORTHO05D003292 6.2e-09 65.9 53 52.8
Hund14395 Selenicereus undatus HOM05D000344 ORTHO05D003292 6.2e-09 65.9 44 63.6
TWI15G0289 Tripterygium wilfordii HOM05D000344 ORTHO05D003292 6.2e-09 65.9 53 56.6
Cpa.g.sc552.1 Carica papaya HOM05D000344 ORTHO05D003292 8.2e-09 65.5 58 58.6
vmacro14171 Vaccinium macrocarpon HOM05D000344 ORTHO05D003292 8.2e-09 65.5 84 42.9
CANSAT21G0911 Cannabis sativa HOM05D000344 ORTHO05D003292 1.1e-08 65.1 74 48.6
Cpa.g.sc227.5 Carica papaya HOM05D000344 ORTHO05D003292 1.1e-08 65.1 72 47.2
arahy.Tifrunner.gnm1.ann1.0EZ7EA Arachis hypogaea HOM05D000344 ORTHO05D003292 1.4e-08 64.7 68 48.5
arahy.Tifrunner.gnm1.ann1.A7Q6YJ Arachis hypogaea HOM05D000344 ORTHO05D003292 1.4e-08 64.7 68 48.5
DCAR_005635 Daucus carota HOM05D000344 ORTHO05D003292 1.4e-08 64.7 52 55.8
Lalb_Chr09g0325631 Lupinus albus HOM05D000344 ORTHO05D003292 1.4e-08 64.7 58 55.2
EL10Ac5g12115 Beta vulgaris HOM05D000344 ORTHO05D003292 1.8e-08 64.3 59 52.5
Migut.M00349 Erythranthe guttata HOM05D000344 ORTHO05D003292 1.8e-08 64.3 52 59.6
Aqoxy3G02342 Aquilegia oxysepala HOM05D000344 ORTHO05D003292 2.4e-08 63.9 48 60.4
AL8G11610 Arabidopsis lyrata HOM05D000344 ORTHO05D003292 2.4e-08 63.9 46 63.0
CAN.G578.7 Capsicum annuum HOM05D002890 ORTHO05D009847 2.4e-08 63.9 282 28.0
unitig_92.g28137 Utricularia gibba HOM05D000344 ORTHO05D003292 2.4e-08 63.9 78 44.9
unitig_93.g30709 Utricularia gibba HOM05D000344 ORTHO05D002684 2.4e-08 63.9 78 44.9
Lj2g0004513 Lotus japonicus HOM05D000344 ORTHO05D003292 3.1e-08 63.5 70 48.6
PSO063G2316 Papaver somniferum HOM05D000344 ORTHO05D003292 3.1e-08 63.5 92 38.0
Eucgr.D02203 Eucalyptus grandis HOM05D000344 ORTHO05D003292 4.0e-08 63.2 49 59.2
Phvul.002G141300 Phaseolus vulgaris HOM05D000344 ORTHO05D003292 4.0e-08 63.2 56 58.9
CDE02G0013 Ceratophyllum demersum HOM05D000344 ORTHO05D003292 5.3e-08 62.8 52 57.7
Manes.17G010600 Manihot esculenta HOM05D000344 ORTHO05D003292 5.3e-08 62.8 49 53.1
PSO782G0103 Papaver somniferum HOM05D000344 ORTHO05D003292 5.3e-08 62.8 114 34.2
Sp2g11550 Schrenkiella parvula HOM05D000344 ORTHO05D003292 1.2e-07 61.6 45 62.2
SpUn0036_0060 Schrenkiella parvula HOM05D000344 ORTHO05D003292 1.2e-07 61.6 45 62.2
PGSC0003DMG400017850 Solanum tuberosum HOM05D000344 ORTHO05D003292 1.2e-07 61.6 43 58.1
HPP92_014610 Vanilla planifolia HOM05D000344 ORTHO05D003292 1.2e-07 61.6 48 58.3
VMungo1215G2088 Vigna mungo HOM05D000344 ORTHO05D003292 1.2e-07 61.6 56 58.9
Ah.12g055090 Amaranthus hybridus HOM05D000344 ORTHO05D003292 1.5e-07 61.2 57 56.1
AL7G36630 Arabidopsis lyrata HOM05D000344 ORTHO05D003292 2.6e-07 60.5 57 56.1
AT4G17895 Arabidopsis thaliana HOM05D000344 ORTHO05D003292 2.6e-07 60.5 45 62.2
Ca_22649_v3 Cicer arietinum L. HOM05D000344 ORTHO05D003292 2.6e-07 60.5 68 45.6
PGSC0003DMG400042692 Solanum tuberosum HOM05D000344 ORTHO05D003292 2.6e-07 60.5 123 34.1
Psat2g135360 Pisum sativum HOM05D000344 ORTHO05D003292 3.4e-07 60.1 45 62.2
Solyc09g017990.3 Solanum lycopersicum HOM05D000344 ORTHO05D003292 3.4e-07 60.1 43 60.5
Lalb_Chr16g0381331 Lupinus albus HOM05D000344 ORTHO05D003292 4.5e-07 59.7 56 53.6
Sc07g0008680 Simmondsia chinensis HOM05D000344 ORTHO05D003292 4.5e-07 59.7 44 61.4
Glyma.01G018300 Glycine max HOM05D000344 ORTHO05D003292 5.8e-07 59.3 59 54.2
Sopen02g001010 Solanum pennellii HOM05D000344 ORTHO05D003292 5.8e-07 59.3 46 54.3
CDE11G0268 Ceratophyllum demersum HOM05D000344 ORTHO05D003292 7.6e-07 58.9 52 53.8
Lalb_Chr05g0216041 Lupinus albus HOM05D000344 ORTHO05D003292 1.0e-06 58.5 58 50.0
Sopen09g010320 Solanum pennellii HOM05D000344 ORTHO05D003292 1.0e-06 58.5 43 58.1
Glyma.09G204600 Glycine max HOM05D000344 ORTHO05D003292 1.3e-06 58.2 44 61.4
Zm00001eb187750 Zea mays HOM05D000344 ORTHO05D003292 1.3e-06 58.2 52 50.0
A08p13400 Brassica napus HOM05D000344 ORTHO05D003292 1.7e-06 57.8 64 45.3
BraA08t33319Z Brassica rapa HOM05D000344 ORTHO05D003292 1.7e-06 57.8 64 45.3
Ca_06082_v3 Cicer arietinum L. HOM05D000344 ORTHO05D003292 1.7e-06 57.8 54 55.6
Zm00001eb251290 Zea mays HOM05D000344 ORTHO05D003292 1.7e-06 57.8 52 50.0
Aa31LG6G630 Aethionema arabicum HOM05D000344 ORTHO05D003292 2.2e-06 57.4 51 56.9
AT5G46740 Arabidopsis thaliana HOM05D000344 ORTHO05D003292 2.2e-06 57.4 46 56.5
BcaC07g38107 Brassica carinata HOM05D000344 ORTHO05D003292 2.2e-06 57.4 64 45.3
BolC8t48530H Brassica oleracea HOM05D000344 ORTHO05D003292 2.2e-06 57.4 64 45.3
Solyc02g005600.1 Solanum lycopersicum HOM05D000344 ORTHO05D003292 2.2e-06 57.4 43 58.1
Thhalv10000790m.g Eutrema salsugineum HOM05D000344 ORTHO05D003292 2.9e-06 57.0 45 60.0
ATR0665G327 Amborella trichopoda HOM05D000344 ORTHO05D003292 3.8e-06 56.6 47 51.1
BcaB04g18449 Brassica carinata HOM05D000344 ORTHO05D003292 3.8e-06 56.6 64 45.3
Carub.0008s0118 Capsella rubella HOM05D000344 ORTHO05D003292 3.8e-06 56.6 46 56.5
Medtr6g022310 Medicago truncatula HOM05D000344 ORTHO05D003292 4.9e-06 56.2 49 59.2
A03p50840 Brassica napus HOM05D000344 ORTHO05D003292 6.5e-06 55.8 67 44.8
BraA03t14171Z Brassica rapa HOM05D002571 ORTHO05D002868 6.5e-06 55.8 67 44.8
Psat2g136280 Pisum sativum HOM05D000344 ORTHO05D003292 6.5e-06 55.8 45 57.8
CARHR174760 Cardamine hirsuta HOM05D000344 ORTHO05D003292 8.4e-06 55.5 46 58.7
Medtr6g022290 Medicago truncatula HOM05D000344 ORTHO05D003292 8.4e-06 55.5 49 57.1
Sp7g16220 Schrenkiella parvula HOM05D000344 ORTHO05D003292 8.4e-06 55.5 69 42.0
Sopen08g015660 Solanum pennellii HOM05D000344 ORTHO05D003292 8.4e-06 55.5 43 55.8


User provided reference genes

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