Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G162.113 Capsicum annuum HOM05D005338 ORTHO05D006550 8.5e-117 423.7 217 100.0
Nitab4.5_0003384g0030 Nicotiana tabacum HOM05D005338 ORTHO05D006550 1.3e-112 409.8 216 95.4
Nitab4.5_0000154g0040 Nicotiana tabacum HOM05D005338 ORTHO05D006550 1.1e-111 406.8 216 94.9
Solyc06g008010.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 5.9e-110 401.0 217 94.0
PGSC0003DMG400014704 Solanum tuberosum HOM05D005338 ORTHO05D006550 5.9e-110 401.0 217 94.0
Sopen06g002850 Solanum pennellii HOM05D005338 ORTHO05D006550 1.3e-109 399.8 217 93.5
Peaxi162Scf00479g00910 Petunia axillaris HOM05D005338 ORTHO05D006550 1.8e-106 389.4 204 96.6
CSS0015965 Camellia sinensis var. sinensis HOM05D005338 ORTHO05D006550 5.2e-106 387.9 215 90.7
SGA_v2.0_scaffold4G02341 Striga asiatica HOM05D005338 ORTHO05D006550 8.8e-106 387.1 215 90.2
Migut.H00565 Erythranthe guttata HOM05D005338 ORTHO05D006550 5.7e-105 384.4 215 89.3
Cfa002226 Carpinus fangiana HOM05D005338 ORTHO05D006550 1.3e-104 383.3 215 88.8
MSTRG.2958 Avicennia marina HOM05D005338 ORTHO05D006550 3.7e-104 381.7 214 89.3
CiPaw.15G069200 Carya illinoinensis HOM05D005338 ORTHO05D006550 1.8e-103 379.4 215 87.0
Actinidia15288 Actinidia chinensis HOM05D005338 ORTHO05D006550 4.1e-103 378.3 215 87.9
Cfa018461 Carpinus fangiana HOM05D005338 ORTHO05D006550 1.2e-102 376.7 215 87.4
Cc07_g04760 Coffea canephora HOM05D005338 ORTHO05D006550 1.6e-102 376.3 214 88.3
QL02p007082 Quercus lobata HOM05D005338 ORTHO05D006550 5.9e-102 374.4 215 87.0
GSVIVG01009622001 Vitis vinifera HOM05D005338 ORTHO05D006550 1.0e-101 373.6 215 87.0
Ciclev10026443m.g Citrus clementina HOM05D005338 ORTHO05D006550 1.3e-101 373.2 211 87.7
Oeu012884.1 Olea europaea HOM05D005338 ORTHO05D006550 2.9e-101 372.1 215 86.5
SalBow1G1006 Salvia bowleyana HOM05D000168 ORTHO05D006550 2.9e-101 372.1 215 86.0
Cpa.g.sc337.5 Carica papaya HOM05D005338 ORTHO05D006550 1.5e-100 369.8 215 85.1
Gorai.007G236400 Gossypium raimondii HOM05D005338 ORTHO05D006550 3.6e-99 365.2 211 86.7
Duzib147G0908 Durio zibethinus HOM05D005338 ORTHO05D006550 6.1e-99 364.4 215 84.7
Nn8g40744 Nelumbo nucifera HOM05D005338 ORTHO05D006550 8.0e-99 364.0 214 85.5
MBI01_g22964_MAGBIO Magnolia biondii HOM05D005338 ORTHO05D006550 1.8e-98 362.8 214 84.6
TWI74G1059 Tripterygium wilfordii HOM05D005338 ORTHO05D006550 1.8e-98 362.8 215 84.7
Sopen03g010490 Solanum pennellii HOM05D005338 ORTHO05D006550 2.3e-98 362.5 216 85.2
Eucgr.F01508 Eucalyptus grandis HOM05D005338 ORTHO05D006550 3.0e-98 362.1 215 83.3
Glyma.15G160500 Glycine max HOM05D005338 ORTHO05D006550 5.2e-98 361.3 215 83.7
COL.COLO4_27273 Corchorus olitorius HOM05D005338 ORTHO05D006550 6.8e-98 360.9 215 83.3
PGR083G0298 Punica granatum HOM05D005338 ORTHO05D006550 6.8e-98 360.9 215 84.2
Sopen03g021660 Solanum pennellii HOM05D005338 ORTHO05D006550 6.8e-98 360.9 216 84.7
Gohir.A11G203500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 8.8e-98 360.5 215 83.7
Gorai.003G040400 Gossypium raimondii HOM05D005338 ORTHO05D006550 1.5e-97 359.8 215 83.3
Hma1.2p1_0471F.1_g159310 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 2.0e-97 359.4 215 84.2
Glyma.09G054300 Glycine max HOM05D005338 ORTHO05D006550 2.6e-97 359.0 215 83.7
VMungo1215G3044 Vigna mungo HOM05D005338 ORTHO05D006550 2.6e-97 359.0 215 84.2
Gohir.D03G039200 Gossypium hirsutum HOM05D005338 ORTHO05D006550 3.4e-97 358.6 215 83.3
Medtr2g438770 Medicago truncatula HOM05D005338 ORTHO05D006550 3.4e-97 358.6 215 83.7
Sopen03g021630 Solanum pennellii HOM05D005338 ORTHO05D006550 4.4e-97 358.2 216 84.3
Gohir.A02G128500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 5.7e-97 357.8 215 82.8
THA.LOC104824882 Tarenaya hassleriana HOM05D005338 ORTHO05D006550 5.7e-97 357.8 215 81.4
CANSAT25G1955 Cannabis sativa HOM05D005338 ORTHO05D006550 9.8e-97 357.1 215 82.8
Prupe.1G518900 Prunus persica HOM05D005338 ORTHO05D006550 1.3e-96 356.7 214 82.2
Manes.13G095300 Manihot esculenta HOM05D005338 ORTHO05D006550 1.7e-96 356.3 217 83.9
Prupe.1G517500 Prunus persica HOM05D005338 ORTHO05D006550 2.8e-96 355.5 214 81.8
ClCG08G015430 Citrullus lanatus HOM05D005338 ORTHO05D006550 6.3e-96 354.4 215 80.5
CsaV3_2G028360 Cucumis sativus L. HOM05D005338 ORTHO05D006550 6.3e-96 354.4 215 80.5
DCAR_003287 Daucus carota HOM05D005338 ORTHO05D006550 8.3e-96 354.0 215 81.9
EL10Ac3g06218 Beta vulgaris HOM05D005338 ORTHO05D006550 1.1e-95 353.6 215 81.9
vmacro21598 Vaccinium macrocarpon HOM05D005338 ORTHO05D006550 1.1e-95 353.6 204 86.8
arahy.Tifrunner.gnm1.ann1.82M2ZV Arachis hypogaea HOM05D005338 ORTHO05D006550 1.4e-95 353.2 215 81.9
arahy.Tifrunner.gnm1.ann1.F09FAE Arachis hypogaea HOM05D005338 ORTHO05D006550 1.4e-95 353.2 215 81.9
arahy.Tifrunner.gnm1.ann1.N4382H Arachis hypogaea HOM05D005338 ORTHO05D006550 1.4e-95 353.2 215 81.9
arahy.Tifrunner.gnm1.ann1.VZ94AI Arachis hypogaea HOM05D005338 ORTHO05D006550 1.4e-95 353.2 215 81.9
Thecc.01G098200 Theobroma cacao HOM05D005338 ORTHO05D006550 2.4e-95 352.4 215 81.9
CANSAT56G3114 Cannabis sativa HOM05D005338 ORTHO05D006550 3.1e-95 352.1 215 80.0
CARHR113580 Cardamine hirsuta HOM05D005338 ORTHO05D006550 4.1e-95 351.7 215 80.0
Sed0010775 Sechium edule HOM05D005338 ORTHO05D006550 4.1e-95 351.7 215 79.5
VMungo1309G1758 Vigna mungo HOM05D005338 ORTHO05D006550 4.1e-95 351.7 215 81.9
Phvul.009G240644 Phaseolus vulgaris HOM05D005338 ORTHO05D006550 2.0e-94 349.4 215 81.9
Glyma.18G135700 Glycine max HOM05D005338 ORTHO05D006550 4.5e-94 348.2 215 81.9
FvH4_5g37300 Fragaria vesca HOM05D005338 ORTHO05D006550 5.9e-94 347.8 215 80.5
FAN04G2403 Fragaria x ananassa HOM05D005338 ORTHO05D006550 5.9e-94 347.8 214 80.8
HanXRQChr04g0104391 Helianthus annuus HOM05D005338 ORTHO05D006550 5.9e-94 347.8 218 81.7
Lj4g0021487 Lotus japonicus HOM05D005338 ORTHO05D006550 5.9e-94 347.8 215 80.5
Haze_25403 Corylus avellana HOM05D005338 ORTHO05D006550 1.0e-93 347.1 291 66.0
Lalb_Chr15g0083931 Lupinus albus HOM05D005338 ORTHO05D006550 1.0e-93 347.1 211 81.5
FAN08G1597 Fragaria x ananassa HOM05D005338 ORTHO05D006550 1.7e-93 346.3 215 80.0
unitig_744.g23988 Utricularia gibba HOM05D005338 ORTHO05D006550 1.7e-93 346.3 215 82.8
RcHm_v2.0_Chr5g0038311 Rosa chinensis HOM05D005338 ORTHO05D006550 2.3e-93 345.9 215 79.5
AT2G22370 Arabidopsis thaliana HOM05D005338 ORTHO05D006550 5.0e-93 344.7 215 77.7
AL4G11870 Arabidopsis lyrata HOM05D005338 ORTHO05D006550 1.5e-92 343.2 215 77.2
Lsat_1_v5_gn_1_19481 Lactuca sativa HOM05D005338 ORTHO05D006550 1.5e-92 343.2 204 86.8
Hund12454 Selenicereus undatus HOM05D005338 ORTHO05D006550 1.5e-92 343.2 204 82.8
Psat1g148520 Pisum sativum HOM05D005338 ORTHO05D006550 3.3e-92 342.0 221 77.8
PSO017G6030 Papaver somniferum HOM05D005338 ORTHO05D006550 5.6e-92 341.3 214 79.0
ECA247G2066 Erigeron canadensis HOM05D005338 ORTHO05D006550 1.2e-91 340.1 217 80.6
Thhalv10000318m.g Eutrema salsugineum HOM05D005338 ORTHO05D006550 1.6e-91 339.7 215 76.7
Gohir.D11G220100 Gossypium hirsutum HOM05D005338 ORTHO05D006550 2.8e-91 339.0 206 82.0
Potri.007G095300 Populus trichocarpa HOM05D005338 ORTHO05D006550 3.6e-91 338.6 215 80.9
Aqoxy6G01960 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 1.0e-90 337.0 214 78.5
TPR.G29215 Trifolium pratense HOM05D005338 ORTHO05D006550 1.4e-90 336.7 204 82.8
Medtr5g044730 Medicago truncatula HOM05D005338 ORTHO05D006550 2.3e-90 335.9 204 82.4
BcaC02g08666 Brassica carinata HOM05D005338 ORTHO05D006550 6.8e-90 334.3 216 76.4
PSO170G4003 Papaver somniferum HOM05D005338 ORTHO05D006550 8.9e-90 334.0 214 78.0
A04p16850 Brassica napus HOM05D005338 ORTHO05D006550 1.2e-89 333.6 216 76.4
BraA04t17318Z Brassica rapa HOM05D005338 ORTHO05D006550 1.2e-89 333.6 216 76.4
BcaC02g08711 Brassica carinata HOM05D005338 ORTHO05D006550 1.5e-89 333.2 216 76.4
C04p51430 Brassica napus HOM05D005338 ORTHO05D006550 1.5e-89 333.2 216 76.4
Carub.0004s0155 Capsella rubella HOM05D005338 ORTHO05D006550 1.5e-89 333.2 215 74.9
CAN.G176.23 Capsicum annuum HOM05D005338 ORTHO05D006550 1.5e-89 333.2 185 90.8
Aqoxy1G02678 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 2.6e-89 332.4 214 77.6
FAN13G0739 Fragaria x ananassa HOM05D005338 ORTHO05D006550 4.4e-89 331.6 203 79.8
FAN18G4080 Fragaria x ananassa HOM05D005338 ORTHO05D006550 4.4e-89 331.6 202 80.7
BolC4t26735H Brassica oleracea HOM05D005338 ORTHO05D006550 1.3e-88 330.1 216 75.9
MD15G1369800 Malus domestica HOM05D005338 ORTHO05D006550 2.9e-88 328.9 218 75.7
ATR0767G114 Amborella trichopoda HOM05D005338 ORTHO05D006550 5.9e-86 321.2 214 75.2
CDE07G0352 Ceratophyllum demersum HOM05D005338 ORTHO05D006550 1.3e-85 320.1 196 81.6
Sabra07G0078500 Salix brachista HOM05D005338 ORTHO05D006550 1.7e-85 319.7 208 76.9
HPP92_021909 Vanilla planifolia HOM05D005338 ORTHO05D006550 3.0e-85 318.9 211 73.9
Dinv36026 Davidia involucrata HOM05D005338 ORTHO05D006550 5.0e-85 318.2 215 78.1
Os02g0193900 Oryza sativa ssp. japonica HOM05D005338 ORTHO05D006550 6.2e-83 311.2 203 73.4
Zm00001eb236490 Zea mays HOM05D005338 ORTHO05D006550 1.8e-82 309.7 202 74.3
Aa31LG7G14440 Aethionema arabicum HOM05D005338 ORTHO05D006550 8.9e-82 307.4 274 58.0
Sp4g01410 Schrenkiella parvula HOM05D005338 ORTHO05D006550 8.9e-82 307.4 215 69.8
Rhsim06G0038600 Rhododendron simsii HOM05D005338 ORTHO05D006550 4.6e-78 295.0 185 82.2
MELO3C010912.2 Cucumis melo HOM05D005338 ORTHO05D006550 4.0e-74 282.0 171 80.7
SHI19279 Sapria himalayana HOM05D005338 ORTHO05D006550 1.2e-73 280.4 201 71.1
Lj4A782T79 Lonicera japonica HOM05D005338 ORTHO05D006550 1.7e-72 276.6 173 79.2
Ca_02026_v3 Cicer arietinum L. HOM05D005338 ORTHO05D006550 2.2e-72 276.2 164 81.1
Pp3c14_750 Physcomitrium patens HOM05D005338 ORTHO05D006550 1.4e-71 273.5 220 57.7
Mapoly0023s0045 Marchantia polymorpha HOM05D005338 ORTHO05D006550 9.2e-71 270.8 210 63.8
SalBow1G1231 Salvia bowleyana HOM05D005338 ORTHO05D006550 6.8e-66 254.6 215 66.0
SMO236G0045 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 8.9e-66 254.2 210 58.6
Solyc03g046360.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 8.9e-66 254.2 212 67.0
TAR628G0003 Trochodendron aralioides HOM05D005338 ORTHO05D006550 3.3e-60 235.7 141 83.7
AagrBONN_evm.TU.Sc2ySwM_362.1720 Anthoceros agrestis HOM05D005338 ORTHO05D006550 4.7e-59 231.9 210 56.2
Sc15g0006680 Simmondsia chinensis HOM05D005338 ORTHO05D006550 4.7e-59 231.9 142 83.8
AUR62040070 Chenopodium quinoa HOM05D005338 ORTHO05D006550 8.1e-59 231.1 139 80.6
Sopen00g011030 Solanum pennellii HOM05D005338 ORTHO05D006550 4.9e-56 221.9 217 60.4
RcHm_v2.0_Chr7g0238911 Rosa chinensis HOM05D005338 ORTHO05D006550 1.0e-53 214.2 173 66.5
Sopen00g003620 Solanum pennellii HOM05D005338 ORTHO05D006550 2.5e-52 209.5 175 64.0
Hma1.2p1_0023F.1_g015170 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 3.1e-50 202.6 148 74.3
RcHm_v2.0_Chr5g0034471 Rosa chinensis HOM05D005338 ORTHO05D006550 3.5e-46 189.1 119 79.0
RcHm_v2.0_Chr7g0238871 Rosa chinensis HOM05D005338 ORTHO05D006550 1.8e-42 176.8 110 75.5
Sopen03g021680 Solanum pennellii HOM05D005338 ORTHO05D006550 1.8e-42 176.8 216 51.9
SMO236G0041 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 2.2e-40 169.9 162 50.6
RcHm_v2.0_Chr7g0238881 Rosa chinensis HOM05D005338 ORTHO05D006550 1.2e-33 147.5 88 85.2
TPR.G5804 Trifolium pratense HOM05D005338 ORTHO05D006550 2.0e-33 146.7 81 91.4
Atru.chr1.3597 Acer truncatum HOM05D005338 ORTHO05D006550 2.9e-24 116.3 88 71.6
BcaC04g23293 Brassica carinata HOM05D005338 ORTHO05D006550 1.1e-15 87.8 56 73.2
TAR628G1182 Trochodendron aralioides HOM05D005338 ORTHO05D006550 3.2e-15 86.3 46 91.3
SEGI_27973 Sequoiadendron giganteum HOM05D005338 ORTHO05D006550 1.2e-14 84.3 53 71.7
Atru.chr12.488 Acer truncatum HOM05D005338 ORTHO05D006550 2.1e-14 83.6 45 84.4
BraA09t41155Z Brassica rapa HOM05D005338 ORTHO05D006550 1.0e-13 81.3 63 68.3
MD08G1183200 Malus domestica HOM05D005338 ORTHO05D006550 5.3e-10 68.9 88 46.6
C08p40830 Brassica napus HOM05D005338 ORTHO05D006550 1.9e-07 60.5 34 85.3
BolC8t51648H Brassica oleracea HOM05D005338 ORTHO05D006550 5.5e-07 58.9 34 85.3


User provided reference genes

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