Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1612.6 Capsicum annuum HOM05D003719 ORTHO05D004116 5.0e-72 274.6 171 100.0
CAN.G1612.7 Capsicum annuum HOM05D000541 ORTHO05D000137 7.3e-63 244.2 172 93.0
CAN.G1260.1 Capsicum annuum HOM05D003719 ORTHO05D004116 2.3e-24 116.3 112 59.8
Peaxi162Scf00907g00023 Petunia axillaris HOM05D003719 ORTHO05D004116 7.1e-18 94.7 67 64.2
Nitab4.5_0000792g0110 Nicotiana tabacum HOM05D003719 ORTHO05D004116 2.7e-17 92.8 76 56.6
Nitab4.5_0003123g0030 Nicotiana tabacum HOM05D003719 ORTHO05D004116 1.5e-15 87.0 67 62.7
PGSC0003DMG400031112 Solanum tuberosum HOM05D003719 ORTHO05D004116 2.5e-15 86.3 73 57.5
ECA236G3956 Erigeron canadensis HOM05D001257 ORTHO05D005285 3.3e-15 85.9 75 50.7
Solyc01g081500.4 Solanum lycopersicum HOM05D003719 ORTHO05D004116 4.3e-15 85.5 67 61.2
Peaxi162Scf00245g00417 Petunia axillaris HOM05D003719 ORTHO05D004116 1.6e-14 83.6 91 50.5
Sopen01g033060 Solanum pennellii HOM05D003719 ORTHO05D004116 1.6e-14 83.6 79 54.4
Hma1.2p1_0128F.1_g060060 Hydrangea macrophylla HOM05D003719 ORTHO05D004116 2.8e-14 82.8 71 53.5
Nitab4.5_0000050g0180 Nicotiana tabacum HOM05D003719 ORTHO05D004116 2.8e-14 82.8 67 59.7
Cc02_g26500 Coffea canephora HOM05D003719 ORTHO05D004116 4.8e-14 82.0 69 49.3
GSVIVG01019328001 Vitis vinifera HOM05D003719 ORTHO05D004116 1.1e-13 80.9 87 51.7
Nn1g09363 Nelumbo nucifera HOM05D003719 ORTHO05D004116 1.4e-13 80.5 92 46.7
CDE11G0837 Ceratophyllum demersum HOM05D003719 ORTHO05D004116 1.8e-13 80.1 67 55.2
Dinv43958 Davidia involucrata HOM05D003719 ORTHO05D004116 3.1e-13 79.3 62 59.7
MBI04_g06283_MAGBIO Magnolia biondii HOM05D003719 ORTHO05D004116 5.3e-13 78.6 91 47.3
Sc02g0003460 Simmondsia chinensis HOM05D003719 ORTHO05D004116 5.3e-13 78.6 73 52.1
Ah.05g177100 Amaranthus hybridus HOM05D003719 ORTHO05D004116 9.0e-13 77.8 61 60.7
Rhsim07G0047900 Rhododendron simsii HOM05D003719 ORTHO05D004116 1.2e-12 77.4 62 56.5
Actinidia31730 Actinidia chinensis HOM05D003719 ORTHO05D004116 1.5e-12 77.0 62 54.8
AUR62038028 Chenopodium quinoa HOM05D003719 ORTHO05D004116 1.5e-12 77.0 85 48.2
Prupe.2G107000 Prunus persica HOM05D003719 ORTHO05D004116 1.5e-12 77.0 87 47.1
COL.COLO4_32214 Corchorus olitorius HOM05D003719 ORTHO05D004116 2.0e-12 76.6 69 52.2
ECA248G2234 Erigeron canadensis HOM05D003719 ORTHO05D004116 2.0e-12 76.6 93 43.0
HanXRQChr04g0117621 Helianthus annuus HOM05D003719 ORTHO05D004116 2.0e-12 76.6 93 41.9
TAR629G0070 Trochodendron aralioides HOM05D003719 ORTHO05D004116 2.6e-12 76.3 94 45.7
CANSAT25G2268 Cannabis sativa HOM05D003719 ORTHO05D004116 4.5e-12 75.5 71 50.7
Duzib128G0107 Durio zibethinus HOM05D003719 ORTHO05D004116 4.5e-12 75.5 96 44.8
QL04p053441 Quercus lobata HOM05D003719 ORTHO05D004116 4.5e-12 75.5 66 54.5
Eucgr.E01743 Eucalyptus grandis HOM05D003719 ORTHO05D004116 5.8e-12 75.1 91 44.0
RcHm_v2.0_Chr1g0340791 Rosa chinensis HOM05D003719 ORTHO05D004116 5.8e-12 75.1 86 47.7
TWI60G0027 Tripterygium wilfordii HOM05D003719 ORTHO05D004116 5.8e-12 75.1 62 56.5
EL10Ac1g00661 Beta vulgaris HOM05D003719 ORTHO05D004116 7.6e-12 74.7 73 49.3
FAN03G1006 Fragaria x ananassa HOM05D003719 ORTHO05D004116 1.0e-11 74.3 70 51.4
FAN06G0622 Fragaria x ananassa HOM05D003719 ORTHO05D004116 1.0e-11 74.3 70 51.4
FAN10G3972 Fragaria x ananassa HOM05D003719 ORTHO05D004116 1.0e-11 74.3 66 48.5
HanXRQChr11g0343451 Helianthus annuus HOM05D003719 ORTHO05D004116 1.3e-11 73.9 75 46.7
TWI32G1338 Tripterygium wilfordii HOM05D003719 ORTHO05D004116 1.3e-11 73.9 62 54.8
Actinidia05832 Actinidia chinensis HOM05D003719 ORTHO05D004116 2.2e-11 73.2 87 42.5
Thecc.05G235300 Theobroma cacao HOM05D003719 ORTHO05D004116 2.2e-11 73.2 65 50.8
MD02G1231000 Malus domestica HOM05D003719 ORTHO05D004116 2.9e-11 72.8 80 43.8
MD07G1081800 Malus domestica HOM05D003719 ORTHO05D004116 2.9e-11 72.8 80 43.8
Aqoxy7G02508 Aquilegia oxysepala HOM05D003719 ORTHO05D004116 6.5e-11 71.6 100 39.0
Gohir.A11G301800 Gossypium hirsutum HOM05D003719 ORTHO05D004116 6.5e-11 71.6 97 44.3
Gohir.D11G317400 Gossypium hirsutum HOM05D003719 ORTHO05D004116 6.5e-11 71.6 97 44.3
Gorai.007G347200 Gossypium raimondii HOM05D003719 ORTHO05D004116 6.5e-11 71.6 97 44.3
Solyc10g024470.3 Solanum lycopersicum HOM05D003719 ORTHO05D004116 6.5e-11 71.6 65 49.2
Sopen10g009690 Solanum pennellii HOM05D003719 ORTHO05D004116 6.5e-11 71.6 65 49.2
THA.LOC104820814 Tarenaya hassleriana HOM05D003719 ORTHO05D004116 6.5e-11 71.6 61 50.8
AL6G28780 Arabidopsis lyrata HOM05D003719 ORTHO05D004116 1.1e-10 70.9 65 49.2
Manes.09G133700 Manihot esculenta HOM05D003719 ORTHO05D004116 1.1e-10 70.9 62 51.6
MSTRG.4990 Avicennia marina HOM05D003719 ORTHO05D004116 1.4e-10 70.5 90 44.4
CiPaw.02G047600 Carya illinoinensis HOM05D003719 ORTHO05D004116 1.4e-10 70.5 66 53.0
Ciclev10031549m.g Citrus clementina HOM05D003719 ORTHO05D004116 1.4e-10 70.5 98 38.8
CsaV3_3G009890 Cucumis sativus L. HOM05D002544 ORTHO05D007277 1.4e-10 70.5 67 52.2
PSO170G0628 Papaver somniferum HOM05D003719 ORTHO05D004116 1.4e-10 70.5 91 44.0
Psat5g001120 Pisum sativum HOM05D003719 ORTHO05D004116 1.9e-10 70.1 96 39.6
THA.LOC104827246 Tarenaya hassleriana HOM05D003719 ORTHO05D004116 1.9e-10 70.1 67 47.8
Carub.0006s1593 Capsella rubella HOM05D003719 ORTHO05D004116 2.5e-10 69.7 61 50.8
Oeu020240.1 Olea europaea HOM05D003719 ORTHO05D004116 2.5e-10 69.7 75 42.7
Os10g0324900 Oryza sativa ssp. japonica HOM05D003719 ORTHO05D004116 2.5e-10 69.7 87 44.8
PGR042G1172 Punica granatum HOM05D003719 ORTHO05D004116 2.5e-10 69.7 88 37.5
Migut.N01648 Erythranthe guttata HOM05D003719 ORTHO05D004116 3.2e-10 69.3 69 50.7
Migut.O00700 Erythranthe guttata HOM05D003719 ORTHO05D004116 3.2e-10 69.3 69 50.7
Sp6g26530 Schrenkiella parvula HOM05D003719 ORTHO05D004116 3.2e-10 69.3 61 52.5
TPR.G38555 Trifolium pratense HOM05D001257 ORTHO05D005285 3.2e-10 69.3 61 50.8
AT5G17690 Arabidopsis thaliana HOM05D003719 ORTHO05D004116 4.2e-10 68.9 65 49.2
CsaV3_6G006350 Cucumis sativus L. HOM05D003719 ORTHO05D004116 5.5e-10 68.6 91 42.9
Atru.chr2.1627 Acer truncatum HOM05D003719 ORTHO05D004116 7.1e-10 68.2 78 41.0
Pp3c9_6410 Physcomitrium patens HOM05D003719 ORTHO05D004116 7.1e-10 68.2 61 49.2
Sed0012975 Sechium edule HOM05D003719 ORTHO05D004116 7.1e-10 68.2 69 52.2
Sed0017190 Sechium edule HOM05D003719 ORTHO05D004116 7.1e-10 68.2 85 43.5
SEGI_39270 Sequoiadendron giganteum HOM05D003719 ORTHO05D004116 7.1e-10 68.2 61 49.2
SGA_v2.0_scaffold4G02229 Striga asiatica HOM05D003719 ORTHO05D004116 7.1e-10 68.2 69 46.4
unitig_0.g1580 Utricularia gibba HOM05D003719 ORTHO05D004116 7.1e-10 68.2 94 41.5
Lsat_1_v5_gn_1_89600 Lactuca sativa HOM05D003719 ORTHO05D004116 1.2e-09 67.4 96 39.6
Glyma.06G001700 Glycine max HOM05D003719 ORTHO05D004116 1.6e-09 67.0 74 41.9
Manes.08G156200 Manihot esculenta HOM05D003719 ORTHO05D004116 1.6e-09 67.0 99 36.4
Potri.013G070400 Populus trichocarpa HOM05D003719 ORTHO05D004116 1.6e-09 67.0 65 47.7
PGSC0003DMG400031514 Solanum tuberosum HOM05D003719 ORTHO05D004116 1.6e-09 67.0 86 41.9
arahy.Tifrunner.gnm1.ann1.N569AS Arachis hypogaea HOM05D003719 ORTHO05D004116 2.1e-09 66.6 66 47.0
Thhalv10013571m.g Eutrema salsugineum HOM05D003719 ORTHO05D004116 2.1e-09 66.6 77 44.2
Glyma.04G002100 Glycine max HOM05D003719 ORTHO05D004116 2.1e-09 66.6 65 44.6
BcaB08g36751 Brassica carinata HOM05D003719 ORTHO05D004116 2.7e-09 66.2 61 47.5
BcaC04g18768 Brassica carinata HOM05D003719 ORTHO05D004116 2.7e-09 66.2 61 47.5
A10p21730 Brassica napus HOM05D003719 ORTHO05D004116 2.7e-09 66.2 61 47.5
C09p59480 Brassica napus HOM05D003719 ORTHO05D004116 2.7e-09 66.2 61 47.5
BolC9t58786H Brassica oleracea HOM05D003719 ORTHO05D004116 2.7e-09 66.2 61 47.5
BraA02t05402Z Brassica rapa HOM05D003719 ORTHO05D004116 2.7e-09 66.2 75 44.0
BraA10t44234Z Brassica rapa HOM05D003719 ORTHO05D004116 2.7e-09 66.2 61 47.5
CARHR195490 Cardamine hirsuta HOM05D003719 ORTHO05D004116 2.7e-09 66.2 65 44.6
ClCG06G000580 Citrullus lanatus HOM05D003719 ORTHO05D004116 2.7e-09 66.2 89 41.6
MELO3C022484.2 Cucumis melo HOM05D003719 ORTHO05D004116 2.7e-09 66.2 93 40.9
Potri.019G044400 Populus trichocarpa HOM05D003719 ORTHO05D004116 2.7e-09 66.2 69 46.4
Lj3g0017682 Lotus japonicus HOM05D003719 ORTHO05D004116 3.5e-09 65.9 87 42.5
Aa31LG11G11940 Aethionema arabicum HOM05D003719 ORTHO05D004116 4.6e-09 65.5 57 50.9
Sed0010466 Sechium edule HOM05D003719 ORTHO05D004116 4.6e-09 65.5 90 44.4
arahy.Tifrunner.gnm1.ann1.U92JU2 Arachis hypogaea HOM05D003719 ORTHO05D004116 6.1e-09 65.1 67 46.3
A02p04380 Brassica napus HOM05D003719 ORTHO05D004116 7.9e-09 64.7 75 44.0
Lalb_Chr23g0264911 Lupinus albus HOM05D003719 ORTHO05D004116 7.9e-09 64.7 61 49.2
Phvul.010G034600 Phaseolus vulgaris HOM05D003719 ORTHO05D004116 7.9e-09 64.7 61 47.5
TPR.G9787 Trifolium pratense HOM05D003719 ORTHO05D004116 7.9e-09 64.7 74 43.2
Ca_23168_v3 Cicer arietinum L. HOM05D003719 ORTHO05D004116 1.0e-08 64.3 62 45.2
BcaC03g13534 Brassica carinata HOM05D003719 ORTHO05D004116 1.3e-08 63.9 61 49.2
C02p09250 Brassica napus HOM05D003719 ORTHO05D004116 1.3e-08 63.9 61 49.2
BolC2t06833H Brassica oleracea HOM05D003719 ORTHO05D004116 1.3e-08 63.9 61 49.2
PSO017G6528 Papaver somniferum HOM05D003719 ORTHO05D004116 1.3e-08 63.9 93 39.8
Hund17170 Selenicereus undatus HOM05D003719 ORTHO05D000105 1.3e-08 63.9 72 45.8
Oeu024948.1 Olea europaea HOM05D003719 ORTHO05D004116 1.8e-08 63.5 64 50.0
THA.LOC104802889 Tarenaya hassleriana HOM05D003719 ORTHO05D004116 2.3e-08 63.2 71 43.7
PSO732G0471 Papaver somniferum HOM05D003719 ORTHO05D004116 3.0e-08 62.8 72 38.9
Lsat_1_v5_gn_7_34101 Lactuca sativa HOM05D003719 ORTHO05D004116 3.9e-08 62.4 59 47.5
Phvul.009G117500 Phaseolus vulgaris HOM05D003719 ORTHO05D004116 5.1e-08 62.0 78 37.2
SHI50054 Sapria himalayana HOM05D003719 ORTHO05D004116 5.1e-08 62.0 69 43.5
ATR0568G049 Amborella trichopoda HOM05D003719 ORTHO05D004116 6.7e-08 61.6 61 44.3
Mapoly0009s0028 Marchantia polymorpha HOM05D003719 ORTHO05D004116 6.7e-08 61.6 61 49.2
Sabra19G0054700 Salix brachista HOM05D003719 ORTHO05D004116 8.7e-08 61.2 63 47.6
Duzib177G0203 Durio zibethinus HOM05D003719 ORTHO05D004116 1.1e-07 60.8 54 51.9
Glyma.16G079900 Glycine max HOM05D003719 ORTHO05D004116 1.1e-07 60.8 98 35.7
Hund26916 Selenicereus undatus HOM05D003719 ORTHO05D004116 1.1e-07 60.8 64 45.3
VMungo1309G0350 Vigna mungo HOM05D003719 ORTHO05D004116 1.1e-07 60.8 61 41.0
FAN01G0740 Fragaria x ananassa HOM05D003719 ORTHO05D004116 3.3e-07 59.3 59 49.2
Lalb_Chr13g0290971 Lupinus albus HOM05D003719 ORTHO05D004116 3.3e-07 59.3 88 36.4
Lalb_Chr07g0194591 Lupinus albus HOM05D003719 ORTHO05D004116 7.4e-07 58.2 64 39.1
DCAR_029570 Daucus carota HOM05D003719 ORTHO05D004116 1.3e-06 57.4 92 37.0
HPP92_020485 Vanilla planifolia HOM05D003719 ORTHO05D004116 1.6e-06 57.0 51 54.9
Dinv43515 Davidia involucrata HOM05D003719 ORTHO05D004116 2.2e-06 56.6 71 43.7
Lalb_Chr10g0091841 Lupinus albus HOM05D003719 ORTHO05D004116 2.8e-06 56.2 64 46.9
ClCG05G002450 Citrullus lanatus HOM05D003719 ORTHO05D004116 3.7e-06 55.8 54 51.9
Lalb_Chr12g0210141 Lupinus albus HOM05D003719 ORTHO05D004116 4.8e-06 55.5 67 41.8


User provided reference genes

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