Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1551.1 Capsicum annuum HOM05D006268 ORTHO05D008118 2.3e-193 678.7 336 100.0
PGSC0003DMG400001820 Solanum tuberosum HOM05D006268 ORTHO05D008118 1.4e-174 616.3 336 89.3
Sopen01g032530 Solanum pennellii HOM05D006268 ORTHO05D008118 1.4e-171 606.3 336 89.0
Solyc01g080940.3 Solanum lycopersicum HOM05D006268 ORTHO05D008118 7.1e-171 604.0 336 88.4
Nitab4.5_0001209g0060 Nicotiana tabacum HOM05D006268 ORTHO05D008118 2.4e-166 589.0 336 84.8
Nitab4.5_0001476g0040 Nicotiana tabacum HOM05D006268 ORTHO05D008118 2.2e-164 582.4 336 84.2
MSTRG.4977 Avicennia marina HOM05D006268 ORTHO05D008118 7.9e-138 494.2 334 71.6
CSS0005578 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 3.9e-137 491.9 333 72.4
Rhsim01G0145800 Rhododendron simsii HOM05D006268 ORTHO05D008118 6.7e-137 491.1 333 70.6
Actinidia33290 Actinidia chinensis HOM05D006268 ORTHO05D008118 4.4e-136 488.4 336 70.5
GSVIVG01016051001 Vitis vinifera HOM05D006268 ORTHO05D008118 3.7e-135 485.3 331 72.2
DCAR_029548 Daucus carota HOM05D006268 ORTHO05D008118 4.8e-135 485.0 336 70.5
vmacro21105 Vaccinium macrocarpon HOM05D006268 ORTHO05D008118 8.2e-135 484.2 335 68.4
TAR375G0229 Trochodendron aralioides HOM05D006268 ORTHO05D008118 1.4e-134 483.4 336 70.5
CiPaw.13G019100 Carya illinoinensis HOM05D006268 ORTHO05D008118 9.1e-134 480.7 336 72.0
VMungo0331G0592 Vigna mungo HOM05D006268 ORTHO05D008118 4.5e-133 478.4 332 70.5
Phvul.010G033866 Phaseolus vulgaris HOM05D006268 ORTHO05D008118 7.2e-131 471.1 332 69.6
Cfa010996 Carpinus fangiana HOM05D006268 ORTHO05D008118 3.6e-130 468.8 334 69.5
SalBow4G0743 Salvia bowleyana HOM05D006268 ORTHO05D008118 2.3e-129 466.1 330 68.2
Ca_23170_v3 Cicer arietinum L. HOM05D006268 ORTHO05D008118 3.0e-129 465.7 332 69.0
Haze_02942 Corylus avellana HOM05D006268 ORTHO05D008118 8.8e-129 464.2 333 68.2
Lj3g0019214 Lotus japonicus HOM05D006268 ORTHO05D008118 1.5e-128 463.4 332 69.3
Nn1g00551 Nelumbo nucifera HOM05D006268 ORTHO05D008118 1.3e-127 460.3 337 69.1
Glyma.16G080700 Glycine max HOM05D006268 ORTHO05D008118 1.7e-127 459.9 332 67.8
Potri.002G238300 Populus trichocarpa HOM05D006268 ORTHO05D008118 6.3e-127 458.0 332 66.6
Psat4g207400 Pisum sativum HOM05D006268 ORTHO05D008118 8.2e-127 457.6 336 68.2
Prupe.2G109200 Prunus persica HOM05D006268 ORTHO05D008118 8.2e-127 457.6 336 66.1
Eucgr.D01130 Eucalyptus grandis HOM05D006268 ORTHO05D008118 1.1e-126 457.2 337 66.8
MELO3C006233.2 Cucumis melo HOM05D006268 ORTHO05D008118 1.4e-126 456.8 332 69.0
CsaV3_3G010120 Cucumis sativus L. HOM05D006268 ORTHO05D008118 1.8e-126 456.4 332 69.0
TWI59G0917 Tripterygium wilfordii HOM05D006268 ORTHO05D008118 1.8e-126 456.4 330 69.1
Migut.N01815 Erythranthe guttata HOM05D006268 ORTHO05D008118 7.0e-126 454.5 335 67.5
Glyma.03G093200 Glycine max HOM05D006268 ORTHO05D008118 2.6e-125 452.6 332 66.3
HanXRQChr04g0123661 Helianthus annuus HOM05D006268 ORTHO05D008118 4.5e-125 451.8 337 66.5
PSO063G1446 Papaver somniferum HOM05D006268 ORTHO05D008118 7.7e-125 451.1 332 67.2
CSS0033423 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 1.3e-124 450.3 333 67.9
Lalb_Chr07g0194551 Lupinus albus HOM05D006268 ORTHO05D008118 1.7e-124 449.9 332 67.5
MD00G1098400 Malus domestica HOM05D006268 ORTHO05D008118 2.2e-124 449.5 337 66.8
PSO782G1498 Papaver somniferum HOM05D006268 ORTHO05D008118 2.9e-124 449.1 332 66.9
Gohir.A06G169600 Gossypium hirsutum HOM05D006268 ORTHO05D008118 5.0e-124 448.4 331 68.3
RcHm_v2.0_Chr1g0341291 Rosa chinensis HOM05D006268 ORTHO05D008118 6.5e-124 448.0 335 67.2
CANSAT54G1338 Cannabis sativa HOM05D006268 ORTHO05D008118 8.5e-124 447.6 338 67.5
Sabra02G0181600 Salix brachista HOM05D006268 ORTHO05D008118 1.9e-123 446.4 329 65.0
Cc02_g26120 Coffea canephora HOM05D006268 ORTHO05D008118 2.5e-123 446.0 335 65.4
FAN06G0712 Fragaria x ananassa HOM05D006268 ORTHO05D008118 2.5e-123 446.0 336 67.0
FAN03G0807 Fragaria x ananassa HOM05D006268 ORTHO05D008118 3.2e-123 445.7 336 66.7
Sed0013667 Sechium edule HOM05D006268 ORTHO05D008118 5.5e-123 444.9 332 66.9
EL10Ac1g00692 Beta vulgaris HOM05D006268 ORTHO05D008118 9.4e-123 444.1 333 65.2
FvH4_7g08020 Fragaria vesca HOM05D006268 ORTHO05D008118 9.4e-123 444.1 338 66.9
Sc26g0001930 Simmondsia chinensis HOM05D006268 ORTHO05D008118 1.2e-122 443.7 333 66.1
PGR083G0810 Punica granatum HOM05D006268 ORTHO05D008118 2.7e-122 442.6 333 66.1
Aqoxy3G02409 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 5.2e-121 438.3 338 64.8
Aqoxy3G02437 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 5.2e-121 438.3 338 64.8
Gorai.N008000 Gossypium raimondii HOM05D006268 ORTHO05D008118 5.2e-121 438.3 331 67.1
Ciclev10021110m.g Citrus clementina HOM05D006268 ORTHO05D008118 8.8e-121 437.6 333 66.1
Lsat_1_v5_gn_7_10860 Lactuca sativa HOM05D006268 ORTHO05D008118 2.0e-120 436.4 329 67.2
QL04p024264 Quercus lobata HOM05D006268 ORTHO05D008118 2.8e-119 432.6 360 61.4
AUR62023342 Chenopodium quinoa HOM05D006268 ORTHO05D008118 3.7e-119 432.2 333 63.4
Thecc.03G001300 Theobroma cacao HOM05D006268 ORTHO05D008118 4.8e-119 431.8 331 66.5
Duzib128G0100 Durio zibethinus HOM05D006268 ORTHO05D008118 8.3e-119 431.0 344 64.8
Medtr8g010550 Medicago truncatula HOM05D006268 ORTHO05D008118 2.0e-117 426.4 339 62.5
Ah.06g189690 Amaranthus hybridus HOM05D006268 ORTHO05D008118 2.7e-117 426.0 347 61.4
COL.COLO4_19510 Corchorus olitorius HOM05D006268 ORTHO05D006513 5.9e-117 424.9 331 65.3
FAN01G0355 Fragaria x ananassa HOM05D006268 ORTHO05D008118 6.5e-116 421.4 380 58.7
ClCG05G002670 Citrullus lanatus HOM05D006268 ORTHO05D008118 4.2e-115 418.7 332 63.9
Atru.BG.53.p Acer truncatum HOM05D006268 ORTHO05D008118 2.7e-114 416.0 324 67.3
Hund26937 Selenicereus undatus HOM05D006268 ORTHO05D008118 1.4e-113 413.7 331 62.2
unitig_22.g5778 Utricularia gibba HOM05D006268 ORTHO05D008118 5.4e-110 401.7 331 62.8
arahy.Tifrunner.gnm1.ann1.EHLP6C Arachis hypogaea HOM05D006268 ORTHO05D008118 1.5e-107 393.7 332 59.9
arahy.Tifrunner.gnm1.ann1.V3PJPX Arachis hypogaea HOM05D006268 ORTHO05D008118 2.5e-107 392.9 332 59.9
Manes.08G055700 Manihot esculenta HOM05D006268 ORTHO05D008118 4.2e-107 392.1 292 67.1
Os03g0390700 Oryza sativa ssp. japonica HOM05D006268 ORTHO05D008118 4.7e-106 388.7 332 60.2
BcaB05g22409 Brassica carinata HOM05D006268 ORTHO05D008118 8.0e-106 387.9 330 60.0
ATR0049G059 Amborella trichopoda HOM05D006268 ORTHO05D008118 1.4e-105 387.1 337 59.3
BraA02t05859Z Brassica rapa HOM05D006268 ORTHO05D008118 6.8e-105 384.8 330 59.1
A02p07860 Brassica napus HOM05D006268 ORTHO05D008118 1.5e-104 383.6 330 58.5
C02p13500 Brassica napus HOM05D006268 ORTHO05D008118 5.7e-104 381.7 330 58.8
BolC2t07462H Brassica oleracea HOM05D006268 ORTHO05D008118 5.7e-104 381.7 330 58.8
BcaC03g14111 Brassica carinata HOM05D006268 ORTHO05D008118 1.3e-103 380.6 330 58.5
Thhalv10014126m.g Eutrema salsugineum HOM05D006268 ORTHO05D008118 1.3e-103 380.6 336 57.1
AUR62013813 Chenopodium quinoa HOM05D006268 ORTHO05D008118 1.1e-102 377.5 333 58.6
THA.LOC104799599 Tarenaya hassleriana HOM05D006268 ORTHO05D008118 1.4e-102 377.1 340 56.8
Aa31LG11G10 Aethionema arabicum HOM05D006268 ORTHO05D008118 1.6e-101 373.6 332 57.5
TPR.G9770 Trifolium pratense HOM05D006268 ORTHO05D008118 1.6e-101 373.6 336 56.0
HPP92_028001 Vanilla planifolia HOM05D006268 ORTHO05D008118 5.9e-101 371.7 330 56.1
Zm00001eb392560 Zea mays HOM05D006268 ORTHO05D008118 1.7e-100 370.2 328 58.8
ECA236G2174 Erigeron canadensis HOM05D006268 ORTHO05D008118 6.6e-100 368.2 307 62.5
SEGI_16160 Sequoiadendron giganteum HOM05D006268 ORTHO05D008118 5.6e-99 365.2 352 54.3
AL8G34320 Arabidopsis lyrata HOM05D006268 ORTHO05D008118 2.1e-98 363.2 336 56.8
CARHR272020 Cardamine hirsuta HOM05D006268 ORTHO05D008118 6.1e-98 361.7 336 56.2
Sp6g19880 Schrenkiella parvula HOM05D006268 ORTHO05D008118 2.6e-96 356.3 328 55.2
Dinv43994 Davidia involucrata HOM05D006268 ORTHO05D008118 3.4e-96 355.9 243 72.0
AT5G58220 Arabidopsis thaliana HOM05D006268 ORTHO05D008118 9.2e-94 347.8 336 53.9
Carub.0008s1876 Capsella rubella HOM05D006268 ORTHO05D008118 1.0e-92 344.4 336 53.9
FAN10G2079 Fragaria x ananassa HOM05D006268 ORTHO05D008118 4.0e-89 332.4 311 58.2
SGA_v2.0_scaffold95G28736 Striga asiatica HOM05D006268 ORTHO05D008118 3.5e-85 319.3 245 66.1
Pp3c4_10360 Physcomitrium patens HOM05D006268 ORTHO05D008118 7.1e-78 295.0 335 49.0
CDE04G2879 Ceratophyllum demersum HOM05D006268 ORTHO05D008118 1.6e-77 293.9 282 53.9
SMO367G0371 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 1.9e-75 287.0 357 46.2
Mapoly0090s0043 Marchantia polymorpha HOM05D006268 ORTHO05D008118 3.9e-68 262.7 348 42.5
Lj7C555G14 Lonicera japonica HOM05D006268 ORTHO05D008118 3.3e-67 259.6 180 71.7
AagrBONN_evm.TU.Sc2ySwM_228.2734 Anthoceros agrestis HOM05D006268 ORTHO05D008118 2.1e-61 240.4 311 44.4
CBR_g30589 Chara braunii HOM05D006268 ORTHO05D008118 3.3e-59 233.0 463 34.1
Lj7C555T10 Lonicera japonica HOM05D006268 ORTHO05D008118 9.0e-57 224.9 147 73.5
PRCOL_00004243 Prasinoderma coloniale HOM05D006268 ORTHO05D008118 2.0e-56 223.8 335 41.2
Cre17.g735950 Chlamydomonas reinhardtii HOM05D006268 ORTHO05D008118 4.2e-54 216.1 338 38.8
BcaB05g22411 Brassica carinata HOM05D006268 ORTHO05D008118 1.3e-52 211.1 193 57.5
DCAR_025012 Daucus carota HOM05D006268 ORTHO05D008118 3.3e-51 206.5 163 63.2
Cpa.g.sc74.89 Carica papaya HOM05D006268 ORTHO05D008118 2.1e-37 160.6 177 50.8
SMO197G0011 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 1.8e-36 157.5 147 53.7
Sc26g0001910 Simmondsia chinensis HOM05D006268 ORTHO05D008118 1.9e-35 154.1 151 53.6
SMO367G0431 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 5.7e-35 152.5 160 48.1
SHI28983 Sapria himalayana HOM05D006268 ORTHO05D008118 1.8e-33 147.5 161 49.7
MCO07G440 Micromonas commoda HOM05D006268 ORTHO05D008118 3.8e-31 139.8 150 47.3
BolC9t57859H Brassica oleracea HOM05D006268 ORTHO05D008118 5.7e-27 125.9 81 69.1
Oeu050272.1 Olea europaea HOM05D006268 ORTHO05D008118 2.6e-24 117.1 74 71.6
Hma1.2p1_0076F.1_g039600 Hydrangea macrophylla HOM05D006268 ORTHO05D008118 1.2e-21 108.2 63 76.2
MCO05G065 Micromonas commoda HOM05D006268 ORTHO05D008118 6.7e-20 102.4 132 44.7
BcaC04g19902 Brassica carinata HOM05D006268 ORTHO05D008118 5.5e-14 82.8 57 63.2
MD02G1236900 Malus domestica HOM05D006268 ORTHO05D008118 9.4e-14 82.0 131 42.0
Cfa010995 Carpinus fangiana HOM05D006268 ORTHO05D008118 2.1e-13 80.9 58 62.1
Sabra14G0137200 Salix brachista HOM05D008143 ORTHO05D010256 4.7e-13 79.7 83 47.0
Dinv43550 Davidia involucrata HOM05D006268 ORTHO05D008118 4.5e-08 63.2 64 57.8
C09p50070 Brassica napus HOM05D006268 ORTHO05D008118 1.0e-07 62.0 81 42.0
Dinv43551 Davidia involucrata HOM05D006268 ORTHO05D180404 8.5e-07 58.9 80 41.2
SGA_v2.0_scaffold7G03663 Striga asiatica HOM05D000015 ORTHO05D000984 5.5e-06 56.2 33 75.8


User provided reference genes

Program Settings