Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1522.7 Capsicum annuum HOM05D005025 ORTHO05D006499 5.5e-189 664.1 317 100.0
CAN.G1522.5 Capsicum annuum HOM05D005025 ORTHO05D006499 2.8e-169 598.6 307 92.2
PGSC0003DMG400017847 Solanum tuberosum HOM05D005025 ORTHO05D006499 2.8e-161 572.0 313 87.2
Solyc08g005150.3 Solanum lycopersicum HOM05D005025 ORTHO05D006499 1.6e-156 556.2 313 85.6
Sopen08g001160 Solanum pennellii HOM05D005025 ORTHO05D006499 4.4e-154 548.1 313 84.3
Nitab4.5_0000556g0080 Nicotiana tabacum HOM05D005025 ORTHO05D006499 1.4e-152 543.1 307 84.4
Nitab4.5_0010978g0020 Nicotiana tabacum HOM05D005025 ORTHO05D006499 1.4e-152 543.1 307 83.7
Peaxi162Scf00045g00139 Petunia axillaris HOM05D005025 ORTHO05D006499 3.2e-149 531.9 314 80.3
Dinv28982 Davidia involucrata HOM05D005025 ORTHO05D006499 3.7e-129 465.3 307 69.7
CSS0033528 Camellia sinensis var. sinensis HOM05D005025 ORTHO05D006499 4.9e-129 464.9 307 70.7
Hma1.2p1_0303F.1_g118820 Hydrangea macrophylla HOM05D005025 ORTHO05D006499 5.0e-126 454.9 319 66.8
Prupe.5G031400 Prunus persica HOM05D005025 ORTHO05D006499 1.2e-124 450.3 307 67.8
Lj2A235G62 Lonicera japonica HOM05D005025 ORTHO05D006499 6.2e-124 448.0 307 69.4
Cc08_g03170 Coffea canephora HOM05D005025 ORTHO05D006499 1.5e-122 443.4 314 67.5
Actinidia25983 Actinidia chinensis HOM05D005025 ORTHO05D006499 3.4e-122 442.2 307 68.4
Cfa012482 Carpinus fangiana HOM05D005025 ORTHO05D006499 2.9e-121 439.1 307 65.8
QL12p004468 Quercus lobata HOM05D005025 ORTHO05D006499 6.4e-121 438.0 305 65.6
RcHm_v2.0_Chr7g0210351 Rosa chinensis HOM05D005025 ORTHO05D006499 7.0e-120 434.5 307 66.4
Haze_08183 Corylus avellana HOM05D005025 ORTHO05D006499 6.0e-119 431.4 324 63.3
GSVIVG01013115001 Vitis vinifera HOM05D005025 ORTHO05D006499 2.3e-118 429.5 307 65.5
CiPaw.12G066500 Carya illinoinensis HOM05D005025 ORTHO05D006499 6.6e-118 427.9 307 64.2
FAN18G0071 Fragaria x ananassa HOM05D005025 ORTHO05D006499 1.1e-117 427.2 307 65.5
FAN18G0203 Fragaria x ananassa HOM05D005025 ORTHO05D006499 1.1e-117 427.2 307 65.5
Lsat_1_v5_gn_3_19020 Lactuca sativa HOM05D005025 ORTHO05D006499 7.3e-117 424.5 307 64.8
Manes.17G009400 Manihot esculenta HOM05D005025 ORTHO05D006499 4.7e-116 421.8 306 64.7
FvH4_5g22580 Fragaria vesca HOM05D005025 ORTHO05D006499 1.1e-115 420.6 307 64.8
Potri.001G139400 Populus trichocarpa HOM05D005025 ORTHO05D006499 1.1e-115 420.6 312 64.7
FAN08G2980 Fragaria x ananassa HOM05D005025 ORTHO05D006499 1.4e-115 420.2 307 64.5
Hund14353 Selenicereus undatus HOM05D005025 ORTHO05D006499 3.1e-115 419.1 307 63.2
MD06G1037600 Malus domestica HOM05D005025 ORTHO05D006499 6.8e-115 417.9 309 64.1
Ciclev10011251m.g Citrus clementina HOM05D005025 ORTHO05D006499 1.5e-114 416.8 309 63.4
TAR636G2380 Trochodendron aralioides HOM05D005025 ORTHO05D006499 4.1e-112 408.7 317 61.8
HanXRQChr17g0538241 Helianthus annuus HOM05D005025 ORTHO05D006499 7.1e-112 407.9 306 61.8
Sc22g0001670 Simmondsia chinensis HOM05D005025 ORTHO05D006499 2.1e-111 406.4 311 61.7
Nn3g19421 Nelumbo nucifera HOM05D005025 ORTHO05D006499 7.8e-111 404.4 317 62.5
Thecc.03G306700 Theobroma cacao HOM05D005025 ORTHO05D006499 3.0e-110 402.5 309 60.2
Gohir.A12G207300 Gossypium hirsutum HOM05D005025 ORTHO05D006499 3.3e-109 399.1 307 59.3
Lsat_1_v5_gn_3_18960 Lactuca sativa HOM05D005025 ORTHO05D006499 4.3e-109 398.7 307 60.9
SalBow6G4293 Salvia bowleyana HOM05D005025 ORTHO05D006499 5.6e-109 398.3 313 60.1
PSO063G6878 Papaver somniferum HOM05D005025 ORTHO05D006499 1.2e-108 397.1 334 57.8
Gorai.008G225300 Gossypium raimondii HOM05D005025 ORTHO05D006499 8.1e-108 394.4 307 58.6
MSTRG.12173 Avicennia marina HOM05D005025 ORTHO05D006499 1.1e-107 394.0 311 61.1
EL10Ac5g12057 Beta vulgaris HOM05D005025 ORTHO05D006499 1.1e-107 394.0 307 60.9
Eucgr.E00258 Eucalyptus grandis HOM05D005025 ORTHO05D006499 1.4e-107 393.7 307 60.9
Atru.chr6.1624 Acer truncatum HOM05D005025 ORTHO05D006499 3.1e-107 392.5 308 59.7
Gohir.D12G209700 Gossypium hirsutum HOM05D005025 ORTHO05D006499 3.1e-107 392.5 307 58.3
Sed0025660 Sechium edule HOM05D005025 ORTHO05D006499 3.1e-107 392.5 307 58.3
Cpa.g.sc90.19 Carica papaya HOM05D005025 ORTHO05D006499 4.0e-107 392.1 311 58.5
MELO3C003429.2 Cucumis melo HOM05D005025 ORTHO05D006499 1.5e-106 390.2 309 58.3
ClCG09G011740 Citrullus lanatus HOM05D005025 ORTHO05D006499 2.6e-106 389.4 309 59.2
PSO782G1926 Papaver somniferum HOM05D005025 ORTHO05D006499 5.8e-106 388.3 315 59.7
AUR62018689 Chenopodium quinoa HOM05D005025 ORTHO05D006499 2.2e-105 386.3 281 62.6
CsaV3_3G048940 Cucumis sativus L. HOM05D005025 ORTHO05D006499 2.9e-105 386.0 307 58.0
Glyma.09G206500 Glycine max HOM05D005025 ORTHO05D006499 6.4e-105 384.8 313 56.9
CANSAT21G2346 Cannabis sativa HOM05D005025 ORTHO05D006499 2.4e-104 382.9 308 58.1
Lalb_Chr05g0215861 Lupinus albus HOM05D005025 ORTHO05D006499 3.2e-104 382.5 309 58.3
Rhsim11G0018800 Rhododendron simsii HOM05D005025 ORTHO05D006499 3.2e-104 382.5 307 60.3
Lj2g0005503 Lotus japonicus HOM05D005025 ORTHO05D006499 6.0e-103 378.3 308 57.5
Duzib068G0767 Durio zibethinus HOM05D005025 ORTHO05D006499 7.8e-103 377.9 307 57.7
Sabra01G0108400 Salix brachista HOM05D005025 ORTHO05D006499 7.8e-103 377.9 339 56.9
arahy.Tifrunner.gnm1.ann1.7UXP3N Arachis hypogaea HOM05D005025 ORTHO05D006499 1.3e-102 377.1 316 57.3
arahy.Tifrunner.gnm1.ann1.U5ZP0C Arachis hypogaea HOM05D005025 ORTHO05D006499 1.3e-102 377.1 316 57.3
Cpa.g.sc90.18 Carica papaya HOM05D005025 ORTHO05D006499 3.9e-102 375.6 273 62.6
VMungo1215G2298 Vigna mungo HOM05D005025 ORTHO05D006499 8.6e-102 374.4 306 56.2
Migut.A01080 Erythranthe guttata HOM05D005025 ORTHO05D006499 1.1e-101 374.0 310 58.7
Medtr5g029700 Medicago truncatula HOM05D005025 ORTHO05D006499 1.9e-101 373.2 302 57.3
CARHR031710 Cardamine hirsuta HOM05D005025 ORTHO05D006499 2.5e-101 372.9 301 56.8
Psat2g137720 Pisum sativum HOM05D005025 ORTHO05D006499 1.6e-100 370.2 302 56.6
Aa31LG2G13680 Aethionema arabicum HOM05D005025 ORTHO05D006499 6.2e-100 368.2 301 56.1
THA.LOC104814425 Tarenaya hassleriana HOM05D005025 ORTHO05D006499 6.2e-100 368.2 301 56.8
TWI60G0579 Tripterygium wilfordii HOM05D005025 ORTHO05D006499 1.8e-99 366.7 306 57.5
AT1G32340 Arabidopsis thaliana HOM05D005025 ORTHO05D006499 4.0e-99 365.5 301 55.1
BcaC05g27877 Brassica carinata HOM05D005025 ORTHO05D006499 4.0e-99 365.5 317 53.3
C05p38840 Brassica napus HOM05D005025 ORTHO05D006499 4.0e-99 365.5 317 53.3
Carub.0001s3071 Capsella rubella HOM05D005025 ORTHO05D006499 8.9e-99 364.4 301 55.1
ECA246G3826 Erigeron canadensis HOM05D005025 ORTHO05D006499 2.6e-98 362.8 313 55.6
Aqoxy3G02374 Aquilegia oxysepala HOM05D005025 ORTHO05D006499 4.4e-98 362.1 316 56.0
BolC5t32623H Brassica oleracea HOM05D005025 ORTHO05D006499 5.8e-98 361.7 301 55.1
BraA05t21382Z Brassica rapa HOM05D005025 ORTHO05D006499 5.8e-98 361.7 301 55.5
SGA_v2.0_scaffold36G14307 Striga asiatica HOM05D005025 ORTHO05D006499 5.8e-98 361.7 316 53.8
AUR62007316 Chenopodium quinoa HOM05D005025 ORTHO05D006499 7.6e-98 361.3 302 57.9
Thhalv10007022m.g Eutrema salsugineum HOM05D005025 ORTHO05D006499 7.6e-98 361.3 301 55.5
TPR.G8110 Trifolium pratense HOM05D005025 ORTHO05D006499 9.9e-98 360.9 312 55.1
BcaB03g13744 Brassica carinata HOM05D005025 ORTHO05D006499 1.3e-97 360.5 301 55.1
A05p24990 Brassica napus HOM05D005025 ORTHO05D006499 2.9e-97 359.4 301 54.8
Sp1g28560 Schrenkiella parvula HOM05D005025 ORTHO05D006499 2.9e-97 359.4 301 55.5
ATR0829G096 Amborella trichopoda HOM05D005025 ORTHO05D006499 3.8e-97 359.0 306 55.9
DCAR_032084 Daucus carota HOM05D005025 ORTHO05D006499 3.8e-97 359.0 273 59.3
Lj2g0014595 Lotus japonicus HOM05D005025 ORTHO05D006499 1.9e-96 356.7 308 55.2
PSO782G4765 Papaver somniferum HOM05D005025 ORTHO05D006499 1.7e-94 350.1 318 52.8
Ca_08154_v3 Cicer arietinum L. HOM05D005025 ORTHO05D006499 2.5e-93 346.3 292 54.1
Ciclev10013841m.g Citrus clementina HOM05D005025 ORTHO05D006499 3.3e-93 345.9 338 51.8
SGA_v2.0_scaffold198G41083 Striga asiatica HOM05D005025 ORTHO05D006499 3.3e-93 345.9 312 52.6
unitig_32.g11504 Utricularia gibba HOM05D005025 ORTHO05D006499 2.6e-90 336.3 332 50.6
TAR629G1702 Trochodendron aralioides HOM05D005025 ORTHO05D006499 6.4e-89 331.6 221 67.4
Phvul.002G138700 Phaseolus vulgaris HOM05D005025 ORTHO05D006499 1.4e-88 330.5 307 51.1
PSO104G0015 Papaver somniferum HOM05D005025 ORTHO05D006499 1.9e-88 330.1 317 53.0
PSO104G0071 Papaver somniferum HOM05D005025 ORTHO05D006499 1.9e-88 330.1 317 53.0
PSO104G0167 Papaver somniferum HOM05D005025 ORTHO05D006499 4.2e-88 328.9 317 52.7
ATR0829G033 Amborella trichopoda HOM05D005025 ORTHO05D006499 2.7e-87 326.2 314 51.6
Zm00001eb072220 Zea mays HOM05D005025 ORTHO05D006499 2.7e-87 326.2 310 51.6
SEGI_40920 Sequoiadendron giganteum HOM05D005025 ORTHO05D006499 1.3e-81 307.4 318 47.2
CARHR103750 Cardamine hirsuta HOM05D005025 ORTHO05D006499 6.4e-81 305.1 304 48.0
PSO104G0107 Papaver somniferum HOM05D005025 ORTHO05D006499 7.9e-79 298.1 308 51.0
Oeu028876.1 Olea europaea HOM05D005025 ORTHO05D006499 2.3e-78 296.6 192 70.8
Carub.0245s0001 Capsella rubella HOM05D005025 ORTHO05D006499 4.0e-75 285.8 261 50.2
HPP92_025674 Vanilla planifolia HOM05D005025 ORTHO05D006499 2.1e-71 273.5 313 45.7
PSO729G0276 Papaver somniferum HOM05D005025 ORTHO05D006499 3.3e-69 266.2 324 45.1
Os02g0694700 Oryza sativa ssp. japonica HOM05D005025 ORTHO05D006499 4.1e-67 259.2 301 42.5
COL.COLO4_16974 Corchorus olitorius HOM05D005025 ORTHO05D006499 3.9e-62 242.7 292 43.5
TPR.G18487 Trifolium pratense HOM05D005025 ORTHO05D006499 1.5e-61 240.7 198 56.1
Mapoly0124s0022 Marchantia polymorpha HOM05D005025 ORTHO05D006499 7.4e-61 238.4 333 39.6
AagrBONN_evm.TU.Sc2ySwM_344.4817 Anthoceros agrestis HOM05D005025 ORTHO05D006499 5.0e-57 225.7 335 36.7
DCAR_021701 Daucus carota HOM05D005025 ORTHO05D006499 5.0e-57 225.7 168 59.5
Zm00001eb251320 Zea mays HOM05D005025 ORTHO05D006499 7.2e-56 221.9 296 39.9
Sabra15G0076800 Salix brachista HOM05D005025 ORTHO05D006499 4.6e-55 219.2 179 60.3
Os04g0593700 Oryza sativa ssp. japonica HOM05D005025 ORTHO05D037041 1.7e-52 210.7 220 50.0
SMO358G0265 Selaginella moellendorffii HOM05D005025 ORTHO05D006499 2.4e-51 206.8 291 37.1
PSO384G4548 Papaver somniferum HOM05D005025 ORTHO05D006499 4.4e-45 186.0 315 33.7
CBR_g37671 Chara braunii HOM05D005025 ORTHO05D006499 4.1e-43 179.5 372 30.6
CBR_g40898 Chara braunii HOM05D005025 ORTHO05D006499 7.7e-42 175.3 224 40.6
CAN.G1522.10 Capsicum annuum HOM05D005025 ORTHO05D006499 2.0e-37 160.6 75 96.0
HanXRQChr17g0538221 Helianthus annuus HOM05D005025 ORTHO05D006499 2.0e-37 160.6 101 67.3
AagrBONN_evm.TU.Sc2ySwM_344.3587 Anthoceros agrestis HOM05D005025 ORTHO05D006499 6.3e-28 129.0 299 28.8
AagrBONN_evm.TU.Sc2ySwM_344.5411 Anthoceros agrestis HOM05D005025 ORTHO05D006499 1.1e-27 128.3 118 50.0
HanXRQChr17g0538251 Helianthus annuus HOM05D005025 ORTHO05D006499 5.4e-27 125.9 82 68.3
Pp3c6_18080 Physcomitrium patens HOM05D005025 ORTHO05D006499 2.3e-25 120.6 101 47.5
TPR.G8112 Trifolium pratense HOM05D005025 ORTHO05D006499 1.4e-22 111.3 76 60.5
TPR.G26369 Trifolium pratense HOM05D005025 ORTHO05D006499 2.3e-22 110.5 88 52.3
Glyma.01G016300 Glycine max HOM05D005025 ORTHO05D006499 1.2e-18 98.2 89 50.6
MCO11G741 Micromonas commoda HOM05D005025 ORTHO05D006499 4.5e-18 96.3 303 24.1
Cre01.g018900 Chlamydomonas reinhardtii HOM05D005025 ORTHO05D006499 2.9e-17 93.6 235 26.4
TAR629G0481 Trochodendron aralioides HOM05D005025 ORTHO05D037041 9.5e-16 88.6 60 70.0
CAN.G1522.6 Capsicum annuum HOM05D005025 ORTHO05D115546 4.7e-15 86.3 46 91.3
Glyma.01G016200 Glycine max HOM05D005025 ORTHO05D006499 8.9e-14 82.0 59 57.6
Os04g0593800 Oryza sativa ssp. japonica HOM05D005025 ORTHO05D037041 6.4e-12 75.9 64 54.7
Aqoxy3G02237 Aquilegia oxysepala HOM05D005025 ORTHO05D006499 5.6e-08 62.8 60 51.7
Lj3g0011460 Lotus japonicus HOM05D000327 ORTHO05D000218 7.3e-08 62.4 78 35.9
ECA232G0750 Erigeron canadensis HOM05D000554 ORTHO05D000860 1.1e-06 58.5 113 27.4
Lalb_Chr17g0343331 Lupinus albus HOM05D000327 ORTHO05D000218 1.8e-06 57.8 146 26.7
Aqoxy3G02230 Aquilegia oxysepala HOM05D005025 ORTHO05D006499 3.1e-06 57.0 53 54.7
Glyma.07G044600 Glycine max HOM05D000327 ORTHO05D000218 3.1e-06 57.0 78 37.2
Ah.08g212100 Amaranthus hybridus HOM05D000327 ORTHO05D000218 4.0e-06 56.6 93 30.1
Glyma.07G044500 Glycine max HOM05D000327 ORTHO05D000218 4.0e-06 56.6 78 37.2
Cpa.g.sc135.38 Carica papaya HOM05D000327 ORTHO05D000218 6.8e-06 55.8 85 27.1
Hma1.2p1_0303F.1_g118810 Hydrangea macrophylla HOM05D005025 ORTHO05D006499 6.8e-06 55.8 46 65.2
Nitab4.5_0002458g0010 Nicotiana tabacum HOM05D000327 ORTHO05D000218 6.8e-06 55.8 85 31.8
Os09g0435250 Oryza sativa ssp. japonica HOM05D000327 ORTHO05D000218 6.8e-06 55.8 79 35.4
Nitab4.5_0002507g0050 Nicotiana tabacum HOM05D000327 ORTHO05D000218 8.9e-06 55.5 107 31.8
Peaxi162Scf01279g00015 Petunia axillaris HOM05D000327 ORTHO05D000218 8.9e-06 55.5 85 30.6


User provided reference genes

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