Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1473.1 Capsicum annuum HOM05D004422 ORTHO05D013213 1.5e-33 145.6 71 100.0
Nitab4.5_0000920g0050 Nicotiana tabacum HOM05D004422 ORTHO05D007331 1.1e-12 76.3 41 85.4
Solyc01g090200.4 Solanum lycopersicum HOM05D004422 ORTHO05D007331 1.5e-09 65.9 34 88.2
Sopen01g035990 Solanum pennellii HOM05D004422 ORTHO05D007331 1.5e-09 65.9 34 88.2
Nitab4.5_0002685g0030 Nicotiana tabacum HOM05D004422 ORTHO05D007331 1.9e-09 65.5 36 83.3
Thecc.01G395500 Theobroma cacao HOM05D004422 ORTHO05D007331 1.6e-08 62.4 53 58.5
Cc02_g25150 Coffea canephora HOM05D004422 ORTHO05D007331 4.7e-08 60.8 59 52.5
Peaxi162Scf00475g00041 Petunia axillaris HOM05D004422 ORTHO05D007331 8.1e-08 60.1 43 69.8
Duzib268G0035 Durio zibethinus HOM05D004422 ORTHO05D007331 1.1e-07 59.7 53 54.7
COL.COLO4_07156 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.4e-07 59.3 35 71.4
EL10Ac7g18223 Beta vulgaris HOM05D004422 ORTHO05D007331 2.4e-07 58.5 56 53.6
Gohir.A08G029300 Gossypium hirsutum HOM05D004422 ORTHO05D007331 2.4e-07 58.5 53 54.7
Gohir.D08G040000 Gossypium hirsutum HOM05D004422 ORTHO05D007331 2.4e-07 58.5 53 54.7
Gorai.004G038800 Gossypium raimondii HOM05D004422 ORTHO05D007331 2.4e-07 58.5 53 54.7
Psat7g148920 Pisum sativum HOM05D004422 ORTHO05D013213 2.4e-07 58.5 43 62.8
Actinidia18350 Actinidia chinensis HOM05D004422 ORTHO05D007331 3.1e-07 58.2 43 62.8
Dinv43612 Davidia involucrata HOM05D004422 ORTHO05D007331 3.1e-07 58.2 43 62.8
Psat7g007000 Pisum sativum HOM05D004422 ORTHO05D013213 3.1e-07 58.2 39 69.2
CSS0020521 Camellia sinensis var. sinensis HOM05D004422 ORTHO05D007331 4.0e-07 57.8 59 50.8
CiPaw.14G020100 Carya illinoinensis HOM05D004422 ORTHO05D007331 5.2e-07 57.4 59 50.8
Ca_25801_v3 Cicer arietinum L. HOM05D004422 ORTHO05D007331 5.2e-07 57.4 59 50.8
ClCG06G002430 Citrullus lanatus HOM05D004422 ORTHO05D007331 5.2e-07 57.4 61 47.5
Dinv44059 Davidia involucrata HOM05D004422 ORTHO05D007331 5.2e-07 57.4 43 62.8
MD07G1109400 Malus domestica HOM05D004422 ORTHO05D007331 5.2e-07 57.4 43 60.5
Prupe.2G132400 Prunus persica HOM05D004422 ORTHO05D007331 5.2e-07 57.4 43 62.8
MELO3C022290.2 Cucumis melo HOM05D004422 ORTHO05D007331 6.8e-07 57.0 61 47.5
CsaV3_6G008710 Cucumis sativus L. HOM05D004422 ORTHO05D007331 6.8e-07 57.0 61 47.5
FvH4_7g10270 Fragaria vesca HOM05D004422 ORTHO05D007331 6.8e-07 57.0 56 51.8
FAN03G1687 Fragaria x ananassa HOM05D004422 ORTHO05D007331 6.8e-07 57.0 56 51.8
FAN06G3830 Fragaria x ananassa HOM05D004422 ORTHO05D007331 6.8e-07 57.0 56 51.8
Lalb_Chr07g0195401 Lupinus albus HOM05D004422 ORTHO05D007331 6.8e-07 57.0 59 47.5
Medtr8g006955 Medicago truncatula HOM05D004422 ORTHO05D007331 6.8e-07 57.0 59 50.8
Phvul.010G049401 Phaseolus vulgaris HOM05D004422 ORTHO05D007331 6.8e-07 57.0 59 47.5
RcHm_v2.0_Chr1g0348021 Rosa chinensis HOM05D004422 ORTHO05D007331 6.8e-07 57.0 56 51.8
Lsat_1_v5_gn_4_39461 Lactuca sativa HOM05D004422 ORTHO05D007331 8.9e-07 56.6 36 72.2
Sed0020409 Sechium edule HOM05D004422 ORTHO05D007331 8.9e-07 56.6 61 45.9
BcaB02g07011 Brassica carinata HOM05D004422 ORTHO05D007331 1.2e-06 56.2 59 45.8
A07p29020 Brassica napus HOM05D004422 ORTHO05D007331 1.2e-06 56.2 59 45.8
BraA07t30542Z Brassica rapa HOM05D004422 ORTHO05D007331 1.2e-06 56.2 59 45.8
CDE09G1442 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 1.2e-06 56.2 43 58.1
Nn1g00835 Nelumbo nucifera HOM05D004422 ORTHO05D007331 1.2e-06 56.2 59 44.1
VMungo0331G0292 Vigna mungo HOM05D000002 ORTHO05D000001 1.2e-06 56.2 59 49.2
Glyma.03G110500 Glycine max HOM05D004422 ORTHO05D007331 1.5e-06 55.8 59 49.2
Lj3g0007750 Lotus japonicus HOM05D004422 ORTHO05D007331 1.5e-06 55.8 59 49.2
FAN01G0685 Fragaria x ananassa HOM05D004422 ORTHO05D007331 2.0e-06 55.5 56 50.0
Psat4g224760 Pisum sativum HOM05D004422 ORTHO05D007331 2.0e-06 55.5 36 72.2
Rhsim07G0036300 Rhododendron simsii HOM05D004422 ORTHO05D007331 2.0e-06 55.5 43 60.5
vmacro13500 Vaccinium macrocarpon HOM05D004422 ORTHO05D007331 2.0e-06 55.5 43 60.5
Zm00001eb379480 Zea mays HOM05D004422 ORTHO05D007331 2.0e-06 55.5 44 56.8
Atru.chr5.121 Acer truncatum HOM05D004422 ORTHO05D007331 2.6e-06 55.1 43 60.5
C06p32790 Brassica napus HOM05D004422 ORTHO05D007331 2.6e-06 55.1 53 50.9
BolC6t38401H Brassica oleracea HOM05D004422 ORTHO05D007331 2.6e-06 55.1 53 50.9
TPR.G33119 Trifolium pratense HOM05D004422 ORTHO05D007331 2.6e-06 55.1 59 49.2
AUR62025581 Chenopodium quinoa HOM05D004422 ORTHO05D007331 3.4e-06 54.7 56 50.0
Ah.15g094660 Amaranthus hybridus HOM05D004422 ORTHO05D007331 4.4e-06 54.3 43 58.1
AT3G48110 Arabidopsis thaliana HOM05D004422 ORTHO05D007331 4.4e-06 54.3 59 45.8
TPR.G34724 Trifolium pratense HOM05D004422 ORTHO05D013213 4.4e-06 54.3 36 69.4
Lj7C547G5 Lonicera japonica HOM05D004422 ORTHO05D007331 5.8e-06 53.9 43 60.5
Potri.014G049200 Populus trichocarpa HOM05D004422 ORTHO05D007331 5.8e-06 53.9 59 47.5
THA.LOC104816999 Tarenaya hassleriana HOM05D004422 ORTHO05D007331 5.8e-06 53.9 43 58.1
AL5G27440 Arabidopsis lyrata HOM05D004422 ORTHO05D007331 7.6e-06 53.5 59 45.8
arahy.Tifrunner.gnm1.ann1.NVW2FV Arachis hypogaea HOM05D004422 ORTHO05D007331 7.6e-06 53.5 46 56.5
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 7.6e-06 53.5 56 48.2
Manes.05G055300 Manihot esculenta HOM05D004422 ORTHO05D007331 7.6e-06 53.5 56 50.0
QL10p000960 Quercus lobata HOM05D004422 ORTHO05D007331 7.6e-06 53.5 59 49.2
SGA_v2.0_scaffold340G49325 Striga asiatica HOM05D004422 ORTHO05D007331 7.6e-06 53.5 46 56.5
unitig_0.g1355 Utricularia gibba HOM05D004422 ORTHO05D007331 7.6e-06 53.5 44 54.5
GSVIVG01018288001 Vitis vinifera HOM05D004422 ORTHO05D007331 7.6e-06 53.5 52 51.9
ECA234G0959 Erigeron canadensis HOM05D004422 ORTHO05D007331 9.9e-06 53.1 42 59.5
Os06g0103600 Oryza sativa ssp. japonica HOM05D004422 ORTHO05D007331 9.9e-06 53.1 53 49.1
TAR375G0830 Trochodendron aralioides HOM05D004422 ORTHO05D007331 9.9e-06 53.1 43 55.8


User provided reference genes

Program Settings