Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G146.2 Capsicum annuum HOM05D005445 ORTHO05D007043 2.3e-182 642.1 322 100.0
Solyc07g017400.3 Solanum lycopersicum HOM05D005445 ORTHO05D007043 9.8e-170 600.1 322 93.8
Sopen07g006100 Solanum pennellii HOM05D005445 ORTHO05D007043 1.1e-168 596.7 322 93.5
Nitab4.5_0000899g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 5.4e-160 567.8 312 90.7
Nitab4.5_0004036g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 6.6e-158 560.8 307 91.2
Actinidia07565 Actinidia chinensis HOM05D005445 ORTHO05D007043 7.4e-133 477.6 322 73.6
Hma1.2p1_0314F.1_g122070 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 2.8e-132 475.7 322 73.3
Dinv12613 Davidia involucrata HOM05D005445 ORTHO05D007043 2.4e-131 472.6 322 72.7
Cc00_g00070 Coffea canephora HOM05D005445 ORTHO05D007043 1.2e-130 470.3 322 71.7
Thecc.09G196900 Theobroma cacao HOM05D005445 ORTHO05D007043 1.3e-129 466.8 320 71.9
CSS0000968 Camellia sinensis var. sinensis HOM05D005445 ORTHO05D007043 1.7e-129 466.5 323 71.2
Oeu028820.1 Olea europaea HOM05D005445 ORTHO05D007043 3.2e-128 462.2 299 75.9
Rhsim04G0099700 Rhododendron simsii HOM05D005445 ORTHO05D007043 4.2e-128 461.8 321 70.7
SGA_v2.0_scaffold485G52365 Striga asiatica HOM05D005445 ORTHO05D007043 5.5e-128 461.5 322 72.0
Glyma.08G027200 Glycine max HOM05D005445 ORTHO05D007043 7.1e-128 461.1 322 69.6
CiPaw.15G161100 Carya illinoinensis HOM05D005445 ORTHO05D007043 2.1e-127 459.5 323 69.7
Prupe.1G063800 Prunus persica HOM05D005445 ORTHO05D007043 1.8e-126 456.4 320 69.7
MSTRG.26517 Avicennia marina HOM05D005445 ORTHO05D007043 5.1e-126 454.9 323 70.6
Ciclev10008923m.g Citrus clementina HOM05D005445 ORTHO05D007043 1.9e-125 453.0 320 70.9
MD16G1238000 Malus domestica HOM05D005445 ORTHO05D007043 7.4e-125 451.1 320 70.0
Medtr8g101230 Medicago truncatula HOM05D005445 ORTHO05D007043 1.3e-124 450.3 320 70.3
Lj4g0004845 Lotus japonicus HOM05D005445 ORTHO05D007043 1.6e-124 449.9 317 69.4
Gohir.A08G017100 Gossypium hirsutum HOM05D005445 ORTHO05D007043 1.1e-123 447.2 320 69.4
TWI63G1185 Tripterygium wilfordii HOM05D005445 ORTHO05D007043 1.1e-123 447.2 319 69.6
VMungo0251G0086 Vigna mungo HOM05D005445 ORTHO05D007043 1.4e-123 446.8 322 68.6
GSVIVG01032266001 Vitis vinifera HOM05D005445 ORTHO05D007043 3.1e-123 445.7 324 68.8
Glyma.05G220700 Glycine max HOM05D005445 ORTHO05D007043 1.5e-122 443.4 322 68.3
Nn8g41135 Nelumbo nucifera HOM05D005445 ORTHO05D007043 2.0e-122 443.0 326 68.7
Cpa.g.sc115.19 Carica papaya HOM05D005445 ORTHO05D007043 2.6e-122 442.6 311 69.8
QL11p008649 Quercus lobata HOM05D005445 ORTHO05D007043 5.8e-122 441.4 362 63.0
Gohir.D08G027500 Gossypium hirsutum HOM05D005445 ORTHO05D007043 7.6e-122 441.0 320 69.1
Peaxi162Scf01184g00140 Petunia axillaris HOM05D005445 ORTHO05D007043 7.6e-122 441.0 340 69.4
Manes.02G221800 Manihot esculenta HOM05D005445 ORTHO05D007043 1.0e-121 440.7 308 69.5
ECA234G2663 Erigeron canadensis HOM05D005445 ORTHO05D007043 1.3e-121 440.3 319 69.9
DCAR_020460 Daucus carota HOM05D005445 ORTHO05D007043 1.7e-121 439.9 319 69.9
Ca_17431_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 2.2e-121 439.5 320 67.2
Ca_17440_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 2.2e-121 439.5 320 67.2
FvH4_4g06040 Fragaria vesca HOM05D005445 ORTHO05D007043 2.2e-121 439.5 323 68.7
arahy.Tifrunner.gnm1.ann1.HNJF4G Arachis hypogaea HOM05D005445 ORTHO05D007043 3.8e-121 438.7 319 68.3
Phvul.002G302400 Phaseolus vulgaris HOM05D005445 ORTHO05D007043 3.8e-121 438.7 322 68.3
TPR.G25470 Trifolium pratense HOM05D005445 ORTHO05D007043 5.0e-121 438.3 318 67.9
Atru.chr7.1013 Acer truncatum HOM05D005445 ORTHO05D007043 6.5e-121 438.0 322 68.3
CANSAT80G1260 Cannabis sativa HOM05D005445 ORTHO05D007043 6.5e-121 438.0 324 68.2
RcHm_v2.0_Chr4g0397601 Rosa chinensis HOM05D005445 ORTHO05D007043 1.1e-120 437.2 324 69.1
Gorai.004G024500 Gossypium raimondii HOM05D005445 ORTHO05D007043 1.4e-120 436.8 325 68.0
Lalb_Chr09g0332001 Lupinus albus HOM05D005445 ORTHO05D007043 2.5e-120 436.0 321 67.6
FAN17G2613 Fragaria x ananassa HOM05D005445 ORTHO05D007043 2.7e-119 432.6 323 67.8
SalBow5G4362 Salvia bowleyana HOM05D005445 ORTHO05D007043 4.6e-119 431.8 325 69.2
Psat7g020920 Pisum sativum HOM05D005445 ORTHO05D007043 1.3e-118 430.3 320 65.9
Cfa020755 Carpinus fangiana HOM05D005445 ORTHO05D007043 8.7e-118 427.6 307 69.4
CiPaw.16G104300 Carya illinoinensis HOM05D005445 ORTHO05D007043 1.9e-117 426.4 321 67.0
TAR383G0382 Trochodendron aralioides HOM05D005445 ORTHO05D007043 4.3e-117 425.2 328 66.5
MBI13_g31572_MAGBIO Magnolia biondii HOM05D005445 ORTHO05D007043 5.7e-117 424.9 317 70.7
TAR383G1024 Trochodendron aralioides HOM05D005445 ORTHO05D007043 1.8e-115 419.9 317 67.8
Duzib168G0912 Durio zibethinus HOM05D005445 ORTHO05D007043 2.4e-115 419.5 333 64.6
Sabra06G0059700 Salix brachista HOM05D005445 ORTHO05D007043 9.0e-115 417.5 322 67.4
HanXRQChr10g0309531 Helianthus annuus HOM05D005445 ORTHO05D007043 1.2e-114 417.2 300 70.7
Migut.L01918 Erythranthe guttata HOM05D005445 ORTHO05D007043 8.5e-113 411.0 300 69.3
Aqoxy7G02630 Aquilegia oxysepala HOM05D005445 ORTHO05D007043 1.1e-112 410.6 321 66.4
arahy.Tifrunner.gnm1.ann1.K4ERET Arachis hypogaea HOM05D005445 ORTHO05D007043 1.4e-112 410.2 360 60.6
FAN07G1413 Fragaria x ananassa HOM05D005445 ORTHO05D007043 3.2e-112 409.1 323 65.9
HPP92_028347 Vanilla planifolia HOM05D005445 ORTHO05D007043 4.2e-112 408.7 325 63.4
MELO3C003927.2 Cucumis melo HOM05D005445 ORTHO05D007043 9.4e-112 407.5 319 65.8
Lsat_1_v5_gn_5_80620 Lactuca sativa HOM05D005445 ORTHO05D007043 9.4e-112 407.5 305 68.5
CsaV3_2G009110 Cucumis sativus L. HOM05D005445 ORTHO05D007043 1.6e-111 406.8 320 65.0
Eucgr.C00062 Eucalyptus grandis HOM05D005445 ORTHO05D007043 2.0e-109 399.8 308 64.3
ClCG11G011350 Citrullus lanatus HOM05D005445 ORTHO05D007043 1.7e-108 396.7 320 64.4
Potri.006G078800 Populus trichocarpa HOM05D005445 ORTHO05D007043 3.7e-108 395.6 319 64.9
Duzib170G0675 Durio zibethinus HOM05D005445 ORTHO05D007043 8.2e-108 394.4 319 62.7
CDE06G0990 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 2.4e-107 392.9 318 61.0
ATR0626G233 Amborella trichopoda HOM05D005445 ORTHO05D007043 4.1e-107 392.1 328 61.3
PGR142G0598 Punica granatum HOM05D005445 ORTHO05D007043 1.2e-106 390.6 307 65.5
Hund03231 Selenicereus undatus HOM05D005445 ORTHO05D007043 1.2e-106 390.6 322 62.7
AT2G26590 Arabidopsis thaliana HOM05D005445 ORTHO05D007043 1.5e-106 390.2 292 67.1
THA.LOC104815270 Tarenaya hassleriana HOM05D005445 ORTHO05D007043 5.9e-106 388.3 289 66.8
AL4G19530 Arabidopsis lyrata HOM05D005445 ORTHO05D007043 2.9e-105 386.0 292 66.1
Os05g0594800 Oryza sativa ssp. japonica HOM05D005445 ORTHO05D007043 8.5e-105 384.4 309 63.8
Sp4g09300 Schrenkiella parvula HOM05D005445 ORTHO05D007043 1.1e-104 384.0 292 66.1
CARHR118490 Cardamine hirsuta HOM05D005445 ORTHO05D007043 4.2e-104 382.1 292 65.1
PSO063G4940 Papaver somniferum HOM05D005445 ORTHO05D007043 7.2e-104 381.3 321 64.2
BcaB01g03027 Brassica carinata HOM05D005445 ORTHO05D007043 9.4e-104 380.9 292 66.1
BcaC01g04909 Brassica carinata HOM05D005445 ORTHO05D007043 2.7e-103 379.4 292 65.8
PSO170G6081 Papaver somniferum HOM05D005445 ORTHO05D007043 3.6e-103 379.0 321 63.9
Sed0003073 Sechium edule HOM05D005445 ORTHO05D007043 3.6e-103 379.0 296 65.2
Lj5C772G2 Lonicera japonica HOM05D005445 ORTHO05D007043 6.1e-103 378.3 270 69.6
BraA03t11899Z Brassica rapa HOM05D005445 ORTHO05D007043 1.0e-102 377.5 298 65.1
C03p32210 Brassica napus HOM05D005445 ORTHO05D007043 3.0e-102 375.9 292 65.1
BolC3t15563H Brassica oleracea HOM05D005445 ORTHO05D007043 6.7e-102 374.8 295 64.7
Aa31LG5G9140 Aethionema arabicum HOM05D005445 ORTHO05D007043 2.6e-101 372.9 292 64.4
Carub.0004s0844 Capsella rubella HOM05D005445 ORTHO05D007043 1.3e-100 370.5 293 64.5
Thhalv10000977m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 2.8e-100 369.4 289 66.1
A03p26880 Brassica napus HOM05D005445 ORTHO05D007043 7.0e-99 364.8 298 63.8
Zm00001eb297230 Zea mays HOM05D005445 ORTHO05D007043 5.9e-98 361.7 318 60.1
vmacro20760 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 2.9e-97 359.4 371 53.1
Thhalv10016855m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 3.8e-97 359.0 281 65.5
unitig_85.g27245 Utricularia gibba HOM05D005445 ORTHO05D007043 6.7e-94 348.2 302 60.6
Ah.10g032730 Amaranthus hybridus HOM05D005445 ORTHO05D007043 3.2e-88 329.3 323 55.4
Dinv26479 Davidia involucrata HOM05D005445 ORTHO05D007043 1.0e-86 324.3 222 74.3
EL10Ac2g03624 Beta vulgaris HOM05D005445 ORTHO05D007043 1.8e-86 323.6 345 52.8
SEGI_14233 Sequoiadendron giganteum HOM05D005445 ORTHO05D007043 4.0e-86 322.4 332 52.4
AUR62027984 Chenopodium quinoa HOM05D005445 ORTHO05D007043 6.8e-86 321.6 354 53.4
Hma1.2p1_0314F.1_g122080 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 9.8e-85 317.8 219 74.0
Lalb_Chr05g0223811 Lupinus albus HOM05D005445 ORTHO05D007043 1.4e-83 313.9 244 64.8
AUR62020729 Chenopodium quinoa HOM05D005445 ORTHO05D007043 7.7e-82 308.1 322 52.8
Dinv00323 Davidia involucrata HOM05D005445 ORTHO05D007043 3.7e-76 289.3 197 75.6
Pp3c21_370 Physcomitrium patens HOM05D005445 ORTHO05D007043 1.3e-73 280.8 332 50.0
Sc14g0007060 Simmondsia chinensis HOM05D005445 ORTHO05D007043 2.7e-66 256.5 226 61.9
Mapoly0011s0124 Marchantia polymorpha HOM05D005445 ORTHO05D007043 1.2e-63 247.7 297 48.1
SMO116G0379 Selaginella moellendorffii HOM05D005445 ORTHO05D007043 1.2e-63 247.7 301 47.2
CDE02G2220 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 2.0e-61 240.4 226 56.6
COL.COLO4_23410 Corchorus olitorius HOM05D005445 ORTHO05D007043 3.5e-58 229.6 152 69.7
CBR_g28055 Chara braunii HOM05D005445 ORTHO05D007043 1.4e-54 217.6 356 39.6
Haze_19097 Corylus avellana HOM05D005445 ORTHO05D007043 1.4e-46 191.0 202 53.5
Sc14g0006300 Simmondsia chinensis HOM05D005445 ORTHO05D007043 3.4e-37 159.8 121 65.3
vmacro10242 Vaccinium macrocarpon HOM05D002150 ORTHO05D002191 2.8e-31 140.2 176 46.0
vmacro07726 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 5.3e-30 136.0 90 68.9
MD13G1232400 Malus domestica HOM05D005445 ORTHO05D007043 3.4e-29 133.3 172 48.3
C03p32230 Brassica napus HOM05D005445 ORTHO05D007043 3.2e-27 126.7 80 73.8
BolC3t15564H Brassica oleracea HOM05D005445 ORTHO05D007043 3.2e-27 126.7 80 73.8
MCO02G027 Micromonas commoda HOM05D005445 ORTHO05D007043 7.1e-27 125.6 348 28.2
HPP92_015797 Vanilla planifolia HOM05D005445 ORTHO05D007043 2.1e-26 124.0 293 31.7
Cre11.g469450 Chlamydomonas reinhardtii HOM05D005445 ORTHO05D007043 4.6e-26 122.9 338 31.1
HanXRQChr09g0242991 Helianthus annuus HOM05D005445 ORTHO05D007043 4.5e-21 106.3 86 64.0
HanXRQChr09g0248391 Helianthus annuus HOM05D005445 ORTHO05D007043 1.9e-19 100.9 84 64.3
Lalb_Chr05g0223801 Lupinus albus HOM05D005445 ORTHO05D007043 2.4e-19 100.5 68 70.6
HanXRQChr09g0242981 Helianthus annuus HOM05D005445 ORTHO05D007043 4.2e-19 99.8 84 63.1
HanXRQChr13g0395691 Helianthus annuus HOM05D005445 ORTHO05D007043 4.2e-19 99.8 84 63.1
HanXRQChr09g0246171 Helianthus annuus HOM05D005445 ORTHO05D007043 2.1e-18 97.4 78 66.7
SHI03135 Sapria himalayana HOM05D005445 ORTHO05D007043 3.4e-13 80.1 52 69.2
Sopen09g008640 Solanum pennellii HOM05D011435 ORTHO05D012656 4.5e-13 79.7 125 42.4
SGA_v2.0_scaffold21G09605 Striga asiatica HOM05D005445 ORTHO05D007043 5.8e-13 79.3 163 37.4
vmacro04822 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 1.1e-11 75.1 43 76.7
PRCOL_00002868 Prasinoderma coloniale HOM05D004630 ORTHO05D005727 3.5e-10 70.1 288 24.3
Potri.003G027722 Populus trichocarpa HOM05D005445 ORTHO05D007043 6.7e-09 65.9 64 54.7


User provided reference genes

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