Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1385.1 Capsicum annuum HOM05D004419 ORTHO05D005480 1.2e-135 486.5 237 100.0
CAN.G103.12 Capsicum annuum HOM05D004419 ORTHO05D005480 1.2e-31 141.0 119 66.4
PGSC0003DMG400021346 Solanum tuberosum HOM05D004419 ORTHO05D005480 6.2e-28 128.6 83 74.7
Solyc01g006680.4 Solanum lycopersicum HOM05D004419 ORTHO05D005480 8.1e-28 128.3 83 73.5
Nitab4.5_0003250g0020 Nicotiana tabacum HOM05D004419 ORTHO05D005480 1.8e-27 127.1 83 73.5
Peaxi162Scf00559g00213 Petunia axillaris HOM05D004419 ORTHO05D005480 1.8e-27 127.1 113 59.3
Nitab4.5_0000175g0140 Nicotiana tabacum HOM05D004419 ORTHO05D005480 6.8e-27 125.2 83 72.3
CAN.G388.54 Capsicum annuum HOM05D004419 ORTHO05D005480 3.4e-26 122.9 79 77.2
ECA233G0260 Erigeron canadensis HOM05D004419 ORTHO05D005480 4.6e-23 112.5 143 44.8
Lsat_1_v5_gn_6_50061 Lactuca sativa HOM05D004419 ORTHO05D005480 1.0e-22 111.3 123 48.0
CiPaw.13G165000 Carya illinoinensis HOM05D004419 ORTHO05D005480 1.7e-22 110.5 121 47.9
Oeu024454.3 Olea europaea HOM05D004419 ORTHO05D005480 2.3e-22 110.2 83 60.2
DCAR_002041 Daucus carota HOM05D004419 ORTHO05D005480 6.6e-22 108.6 83 61.4
Hma1.2p1_0143F.1_g064490 Hydrangea macrophylla HOM05D004419 ORTHO05D005480 1.1e-21 107.8 83 61.4
Dinv36300 Davidia involucrata HOM05D004419 ORTHO05D005480 1.5e-21 107.5 74 60.8
HanXRQChr13g0403921 Helianthus annuus HOM05D004419 ORTHO05D005480 3.3e-21 106.3 71 62.0
HanXRQChr02g0056491 Helianthus annuus HOM05D004419 ORTHO05D005480 5.6e-21 105.5 83 59.0
vmacro12711 Vaccinium macrocarpon HOM05D004419 ORTHO05D005480 5.6e-21 105.5 74 62.2
Haze_23057 Corylus avellana HOM05D004419 ORTHO05D005480 7.3e-21 105.1 83 62.7
Haze_23052 Corylus avellana HOM05D004419 ORTHO05D005480 1.2e-20 104.4 85 61.2
MSTRG.21407 Avicennia marina HOM05D004419 ORTHO05D005480 1.6e-20 104.0 68 64.7
Cc01_g04260 Coffea canephora HOM05D004419 ORTHO05D005480 2.1e-20 103.6 83 57.8
Migut.D00562 Erythranthe guttata HOM05D004419 ORTHO05D005480 4.7e-20 102.4 93 48.4
TPR.G13661 Trifolium pratense HOM05D004419 ORTHO05D005633 4.7e-20 102.4 121 49.6
Potri.001G016200 Populus trichocarpa HOM05D004419 ORTHO05D005480 6.2e-20 102.1 83 57.8
arahy.Tifrunner.gnm1.ann1.LD2WL8 Arachis hypogaea HOM05D004419 ORTHO05D005480 8.1e-20 101.7 83 61.4
CSS0021936 Camellia sinensis var. sinensis HOM05D004419 ORTHO05D005480 1.1e-19 101.3 82 58.5
Lj3g0003248 Lotus japonicus HOM05D004419 ORTHO05D005480 1.1e-19 101.3 83 62.7
arahy.Tifrunner.gnm1.ann1.6DX332 Arachis hypogaea HOM05D004419 ORTHO05D005480 1.4e-19 100.9 117 46.2
Nn7g36075 Nelumbo nucifera HOM05D004419 ORTHO05D005480 1.4e-19 100.9 88 55.7
Cfa009704 Carpinus fangiana HOM05D004419 ORTHO05D005480 1.8e-19 100.5 83 59.0
PSO384G0662 Papaver somniferum HOM05D004419 ORTHO05D005480 2.4e-19 100.1 80 60.0
Sabra01G0011400 Salix brachista HOM05D004419 ORTHO05D005480 2.4e-19 100.1 73 58.9
Ciclev10015488m.g Citrus clementina HOM05D004419 ORTHO05D005480 3.1e-19 99.8 80 58.8
SGA_v2.0_scaffold1G00802 Striga asiatica HOM05D004419 ORTHO05D005480 3.1e-19 99.8 70 62.9
Manes.06G168600 Manihot esculenta HOM05D004419 ORTHO05D005480 4.0e-19 99.4 84 54.8
Gorai.010G128800 Gossypium raimondii HOM05D004419 ORTHO05D005480 5.2e-19 99.0 83 56.6
QL01p006124 Quercus lobata HOM05D004419 ORTHO05D005480 5.2e-19 99.0 81 58.0
Glyma.12G055000 Glycine max HOM05D004419 ORTHO05D005480 6.8e-19 98.6 83 61.4
Psat7g213880 Pisum sativum HOM05D004419 ORTHO05D005480 6.8e-19 98.6 83 61.4
Glyma.11G130600 Glycine max HOM05D004419 ORTHO05D005480 8.9e-19 98.2 83 61.4
MD03G1020700 Malus domestica HOM05D004419 ORTHO05D005480 1.2e-18 97.8 67 62.7
Gohir.A06G108900 Gossypium hirsutum HOM05D004419 ORTHO05D005480 1.5e-18 97.4 83 55.4
Medtr4g066020 Medicago truncatula HOM05D004419 ORTHO05D005480 1.5e-18 97.4 83 60.2
QL01p016023 Quercus lobata HOM05D004419 ORTHO05D005480 1.5e-18 97.4 80 58.8
Ah.06g193530 Amaranthus hybridus HOM05D004419 ORTHO05D005480 2.0e-18 97.1 84 57.1
Gohir.D06G112900 Gossypium hirsutum HOM05D004419 ORTHO05D005480 2.0e-18 97.1 71 59.2
Phvul.011G056900 Phaseolus vulgaris HOM05D004419 ORTHO05D005480 2.6e-18 96.7 83 60.2
TAR623G0092 Trochodendron aralioides HOM05D004419 ORTHO05D005480 2.6e-18 96.7 90 50.0
Ca_20582_v3 Cicer arietinum L. HOM05D004419 ORTHO05D005480 3.4e-18 96.3 83 59.0
FAN16G1269 Fragaria x ananassa HOM05D004419 ORTHO05D005480 3.4e-18 96.3 79 55.7
PGR119G1205 Punica granatum HOM05D004419 ORTHO05D005480 3.4e-18 96.3 118 44.1
Ah.04g161770 Amaranthus hybridus HOM05D004419 ORTHO05D005480 4.4e-18 95.9 84 53.6
FvH4_3g43600 Fragaria vesca HOM05D004419 ORTHO05D005480 4.4e-18 95.9 67 59.7
FAN11G1953 Fragaria x ananassa HOM05D004419 ORTHO05D005480 4.4e-18 95.9 67 59.7
Lj2C654G2 Lonicera japonica HOM05D004419 ORTHO05D005480 4.4e-18 95.9 71 57.7
Eucgr.J00814 Eucalyptus grandis HOM05D004419 ORTHO05D005480 5.8e-18 95.5 83 55.4
Atru.chr3.2519_Atru.chr3.2520 Acer truncatum HOM05D004419 ORTHO05D005480 7.6e-18 95.1 80 56.2
Carub.0003s2077 Capsella rubella HOM05D004419 ORTHO05D005480 7.6e-18 95.1 127 43.3
Duzib150G1622 Durio zibethinus HOM05D004419 ORTHO05D005480 7.6e-18 95.1 83 55.4
AT3G20810 Arabidopsis thaliana HOM05D004419 ORTHO05D005480 9.9e-18 94.7 83 55.4
Duzib168G0032 Durio zibethinus HOM05D004419 ORTHO05D005480 9.9e-18 94.7 83 54.2
CAN.G27.69 Capsicum annuum HOM05D005779 ORTHO05D007040 1.3e-17 94.4 48 93.8
Cpa.g.sc84.102 Carica papaya HOM05D004419 ORTHO05D005480 1.3e-17 94.4 72 55.6
Manes.14G013900 Manihot esculenta HOM05D004419 ORTHO05D005480 1.3e-17 94.4 83 55.4
VMungo1127G0574 Vigna mungo HOM05D004419 ORTHO05D005480 1.3e-17 94.4 80 57.5
GSVIVG01025322001 Vitis vinifera HOM05D004419 ORTHO05D005480 1.3e-17 94.4 71 56.3
AL3G34730 Arabidopsis lyrata HOM05D004419 ORTHO05D005480 1.7e-17 94.0 83 54.2
Lalb_Chr01g0003291 Lupinus albus HOM05D004419 ORTHO05D005480 1.7e-17 94.0 83 59.0
RcHm_v2.0_Chr5g0078171 Rosa chinensis HOM05D004419 ORTHO05D005480 1.7e-17 94.0 77 53.2
Actinidia06325 Actinidia chinensis HOM05D004419 ORTHO05D005480 2.9e-17 93.2 75 53.3
FAN25G0488 Fragaria x ananassa HOM05D004419 ORTHO05D005480 2.9e-17 93.2 67 58.2
Thecc.09G224700 Theobroma cacao HOM05D004419 ORTHO05D005480 2.9e-17 93.2 83 51.8
Hund22076 Selenicereus undatus HOM05D004419 ORTHO05D005480 3.8e-17 92.8 83 53.0
Sc16g0011690 Simmondsia chinensis HOM05D004419 ORTHO05D005480 4.9e-17 92.4 74 56.8
AUR62000082 Chenopodium quinoa HOM05D004419 ORTHO05D005480 6.4e-17 92.0 71 56.3
Aqoxy2G00106 Aquilegia oxysepala HOM05D004419 ORTHO05D005480 8.4e-17 91.7 83 51.8
CAN.G827.5 Capsicum annuum HOM05D005779 ORTHO05D007040 8.4e-17 91.7 48 89.6
FAN21G0217 Fragaria x ananassa HOM05D004419 ORTHO05D005480 8.4e-17 91.7 67 56.7
Lalb_Chr19g0138231 Lupinus albus HOM05D004419 ORTHO05D005480 8.4e-17 91.7 83 55.4
THA.LOC104816908 Tarenaya hassleriana HOM05D004419 ORTHO05D005480 8.4e-17 91.7 124 41.1
Prupe.6G015700 Prunus persica HOM05D004419 ORTHO05D005480 1.1e-16 91.3 67 59.7
AUR62019254 Chenopodium quinoa HOM05D004419 ORTHO05D005480 2.4e-16 90.1 71 54.9
AUR62043680 Chenopodium quinoa HOM05D004419 ORTHO05D005480 2.4e-16 90.1 71 54.9
CANSAT54G1224 Cannabis sativa HOM05D004419 ORTHO05D005480 4.2e-16 89.4 115 41.7
CDE05G0158 Ceratophyllum demersum HOM05D004419 ORTHO05D005480 4.2e-16 89.4 66 57.6
Rhsim01G0189600 Rhododendron simsii HOM05D004419 ORTHO05D005480 4.2e-16 89.4 71 53.5
MBI01_g05106_MAGBIO Magnolia biondii HOM05D004419 ORTHO05D005480 5.4e-16 89.0 71 52.1
EL10Ac4g10313 Beta vulgaris HOM05D004419 ORTHO05D005480 7.1e-16 88.6 71 53.5
TWI60G0085 Tripterygium wilfordii HOM05D004419 ORTHO05D005480 1.2e-15 87.8 79 55.7
ATR0605G084 Amborella trichopoda HOM05D004419 ORTHO05D005480 2.7e-15 86.7 87 47.1
Aa31LG8G7630 Aethionema arabicum HOM05D004419 ORTHO05D005480 3.5e-15 86.3 125 38.4
Os09g0489200 Oryza sativa ssp. japonica HOM05D004419 ORTHO05D005480 6.0e-15 85.5 120 40.0
BcaB06g26154 Brassica carinata HOM05D004419 ORTHO05D005480 1.0e-14 84.7 83 49.4
HPP92_017970 Vanilla planifolia HOM05D004419 ORTHO05D005480 1.7e-14 84.0 74 44.6
Sp3g18830 Schrenkiella parvula HOM05D004419 ORTHO05D005480 3.0e-14 83.2 83 49.4
Os08g0508500 Oryza sativa ssp. japonica HOM05D004419 ORTHO05D005480 3.9e-14 82.8 70 48.6
SHI30509 Sapria himalayana HOM05D004419 ORTHO05D005480 8.7e-14 81.6 71 50.7
ClCG03G013430 Citrullus lanatus HOM05D004419 ORTHO05D005480 1.1e-13 81.3 132 34.1
Thhalv10021129m.g Eutrema salsugineum HOM05D004419 ORTHO05D005480 1.1e-13 81.3 127 39.4
A05p27970 Brassica napus HOM05D004419 ORTHO05D005480 1.9e-13 80.5 83 47.0
CARHR096650 Cardamine hirsuta HOM05D004419 ORTHO05D005480 2.5e-13 80.1 71 50.7
BcaC05g28276 Brassica carinata HOM05D004419 ORTHO05D005480 3.3e-13 79.7 83 47.0
C05p43260 Brassica napus HOM05D004419 ORTHO05D005480 3.3e-13 79.7 83 47.0
BraA05t21680Z Brassica rapa HOM05D004419 ORTHO05D005480 3.3e-13 79.7 82 47.6
PGSC0003DMG400026779 Solanum tuberosum HOM05D005779 ORTHO05D007040 4.3e-13 79.3 48 75.0
BolC5t33056H Brassica oleracea HOM05D004419 ORTHO05D005480 5.6e-13 79.0 82 47.6
Sed0001509 Sechium edule HOM05D004419 ORTHO05D005480 9.6e-13 78.2 75 45.3
Solyc01g010480.3 Solanum lycopersicum HOM05D005779 ORTHO05D007040 1.6e-12 77.4 48 75.0
Sopen01g006090 Solanum pennellii HOM05D005779 ORTHO05D007040 1.6e-12 77.4 48 75.0
MELO3C015209.2 Cucumis melo HOM05D004419 ORTHO05D005480 2.8e-12 76.6 66 45.5
CsaV3_1G042600 Cucumis sativus L. HOM05D004419 ORTHO05D005480 3.6e-12 76.3 78 44.9
MD11G1022300 Malus domestica HOM05D004419 ORTHO05D005480 8.1e-12 75.1 67 50.7
SEGI_22299 Sequoiadendron giganteum HOM05D004419 ORTHO05D005480 1.1e-11 74.7 75 46.7
Pp3c17_10850 Physcomitrium patens HOM05D004419 ORTHO05D005480 1.4e-11 74.3 66 51.5
vmacro19282 Vaccinium macrocarpon HOM05D004419 ORTHO05D005480 3.1e-11 73.2 71 49.3
BcaC05g28278 Brassica carinata HOM05D004419 ORTHO05D005480 2.0e-10 70.5 83 47.0
AagrBONN_evm.TU.Sc2ySwM_117.3437 Anthoceros agrestis HOM05D004419 ORTHO05D005480 8.4e-09 65.1 48 54.2
Mapoly0036s0149 Marchantia polymorpha HOM05D004419 ORTHO05D005480 1.1e-08 64.7 81 35.8
CBR_g68529 Chara braunii HOM05D004419 ORTHO05D005480 3.2e-08 63.2 69 46.4
BcaC05g28277 Brassica carinata HOM05D004419 ORTHO05D005480 5.4e-08 62.4 83 42.2
Sopen01g002670 Solanum pennellii HOM05D004419 ORTHO05D005480 5.4e-08 62.4 40 70.0
HanXRQChr16g0505821 Helianthus annuus HOM05D004419 ORTHO05D005480 2.7e-07 60.1 43 48.8
Nitab4.5_0002382g0030 Nicotiana tabacum HOM05D005779 ORTHO05D007040 7.9e-07 58.5 41 68.3
SMO364G0845 Selaginella moellendorffii HOM05D004419 ORTHO05D005480 2.3e-06 57.0 48 41.7
Nitab4.5_0002291g0030 Nicotiana tabacum HOM05D005779 ORTHO05D007040 3.0e-06 56.6 52 53.8
Cre11.g467768 Chlamydomonas reinhardtii HOM05D004419 ORTHO05D005480 8.7e-06 55.1 62 41.9


User provided reference genes

Program Settings