Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G134.120 Capsicum annuum HOM05D005810 ORTHO05D007279 0.0e+00 1371.7 716 100.0
Nitab4.5_0005059g0010 Nicotiana tabacum HOM05D005810 ORTHO05D007279 2.0e-287 992.3 658 81.5
Peaxi162Scf00282g00136 Petunia axillaris HOM05D005810 ORTHO05D007279 5.6e-282 974.2 653 80.4
CSS0013071 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 9.0e-248 860.5 676 68.9
CSS0027419 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 4.2e-245 851.7 668 69.0
Migut.B01074 Erythranthe guttata HOM05D005810 ORTHO05D007279 1.6e-241 839.7 660 66.1
GSVIVG01021833001 Vitis vinifera HOM05D005810 ORTHO05D007279 6.9e-240 834.3 656 66.6
QL03p024871 Quercus lobata HOM05D005810 ORTHO05D007279 7.1e-237 824.3 659 66.2
SalBow8G0563 Salvia bowleyana HOM05D005810 ORTHO05D007279 3.9e-235 818.5 679 63.6
COL.COLO4_15299 Corchorus olitorius HOM05D005810 ORTHO05D007279 5.7e-234 814.7 661 64.4
Cfa006452 Carpinus fangiana HOM05D005810 ORTHO05D007279 1.1e-232 810.4 656 64.6
Potri.005G051400 Populus trichocarpa HOM05D005810 ORTHO05D007279 2.5e-229 799.3 661 63.7
Ciclev10003382m.g Citrus clementina HOM05D005810 ORTHO05D007279 1.6e-228 796.6 660 64.7
Rhsim05G0160900 Rhododendron simsii HOM05D005810 ORTHO05D007279 5.1e-227 791.6 673 62.4
Prupe.6G340900 Prunus persica HOM05D005810 ORTHO05D007279 6.7e-227 791.2 652 65.6
THA.LOC104821678 Tarenaya hassleriana HOM05D005810 ORTHO05D007279 8.7e-227 790.8 660 63.6
EL10Ac4g09107 Beta vulgaris HOM05D005810 ORTHO05D007279 1.9e-226 789.6 686 60.3
Duzib177G1000 Durio zibethinus HOM05D005810 ORTHO05D007279 3.3e-226 788.9 664 63.0
Thecc.05G287300 Theobroma cacao HOM05D005810 ORTHO05D007279 3.3e-226 788.9 656 63.7
FvH4_6g03330 Fragaria vesca HOM05D005810 ORTHO05D007279 1.8e-224 783.1 661 63.2
MELO3C024669.2 Cucumis melo HOM05D005810 ORTHO05D007279 2.4e-224 782.7 654 64.2
RcHm_v2.0_Chr3g0451831 Rosa chinensis HOM05D005810 ORTHO05D007279 5.3e-224 781.6 665 63.0
Sed0015078 Sechium edule HOM05D005810 ORTHO05D007279 5.3e-224 781.6 665 63.3
CANSAT54G2140 Cannabis sativa HOM05D005810 ORTHO05D007279 1.5e-223 780.0 666 63.2
PGR031G1118 Punica granatum HOM05D005810 ORTHO05D007279 1.5e-223 780.0 656 64.0
Eucgr.B01694 Eucalyptus grandis HOM05D005810 ORTHO05D007279 2.6e-223 779.2 659 63.3
ClCG06G009190 Citrullus lanatus HOM05D005810 ORTHO05D007279 2.9e-222 775.8 653 64.2
Gorai.007G284000 Gossypium raimondii HOM05D005810 ORTHO05D007279 5.5e-221 771.5 657 63.3
Gohir.A11G254200 Gossypium hirsutum HOM05D005810 ORTHO05D007279 1.2e-220 770.4 657 62.9
Gohir.D11G264000 Gossypium hirsutum HOM05D005810 ORTHO05D007279 1.2e-220 770.4 657 63.2
MD04G1221700 Malus domestica HOM05D005810 ORTHO05D007279 1.4e-219 766.9 656 63.3
Lalb_Chr18g0045021 Lupinus albus HOM05D005810 ORTHO05D007279 5.1e-219 765.0 661 63.1
AUR62001034 Chenopodium quinoa HOM05D005810 ORTHO05D007279 1.7e-217 760.0 696 58.3
AL3G14980 Arabidopsis lyrata HOM05D005810 ORTHO05D007279 2.2e-217 759.6 659 61.6
PSO210G1835 Papaver somniferum HOM05D005810 ORTHO05D007279 4.8e-217 758.4 660 62.9
ECA232G3974 Erigeron canadensis HOM05D005810 ORTHO05D007279 2.4e-216 756.1 666 61.6
PSO832G3650 Papaver somniferum HOM05D005810 ORTHO05D007279 2.4e-216 756.1 663 62.7
AT3G04820 Arabidopsis thaliana HOM05D005810 ORTHO05D007279 6.9e-216 754.6 658 60.5
arahy.Tifrunner.gnm1.ann1.BBX725 Arachis hypogaea HOM05D005810 ORTHO05D007279 3.4e-215 752.3 665 61.5
HanXRQChr12g0379621 Helianthus annuus HOM05D005810 ORTHO05D007279 3.4e-215 752.3 662 61.9
CARHR079070 Cardamine hirsuta HOM05D005810 ORTHO05D007279 5.9e-215 751.5 658 61.1
Cpa.g.sc117.72 Carica papaya HOM05D005810 ORTHO05D007279 7.7e-215 751.1 670 61.5
arahy.Tifrunner.gnm1.ann1.E80190 Arachis hypogaea HOM05D005810 ORTHO05D007279 2.9e-214 749.2 665 61.2
Aqoxy5G00419 Aquilegia oxysepala HOM05D005810 ORTHO05D007279 2.5e-213 746.1 658 62.5
Sp3g03650 Schrenkiella parvula HOM05D005810 ORTHO05D007279 9.4e-213 744.2 655 60.8
Thhalv10022286m.g Eutrema salsugineum HOM05D005810 ORTHO05D007279 2.7e-212 742.7 654 60.6
Ah.06g192190 Amaranthus hybridus HOM05D005810 ORTHO05D007279 1.4e-211 740.3 668 59.7
BcaB04g19298 Brassica carinata HOM05D005810 ORTHO05D007279 3.0e-211 739.2 652 61.2
Glyma.03G245900 Glycine max HOM05D005810 ORTHO05D007279 3.9e-211 738.8 656 61.0
VMungo0222G0001 Vigna mungo HOM05D005810 ORTHO05D007279 5.1e-211 738.4 674 59.8
Ca_09411_v3 Cicer arietinum L. HOM05D005810 ORTHO05D007279 2.0e-210 736.5 666 59.9
Aa31LG5G15210 Aethionema arabicum HOM05D005810 ORTHO05D007279 2.6e-210 736.1 698 59.3
Lj1g0027742 Lotus japonicus HOM05D005810 ORTHO05D007279 3.3e-210 735.7 659 61.0
vmacro14215 Vaccinium macrocarpon HOM05D005810 ORTHO05D007279 1.3e-209 733.8 736 56.0
DCAR_006618 Daucus carota HOM05D005810 ORTHO05D007279 4.8e-209 731.9 654 59.9
C03p41160 Brassica napus HOM05D005810 ORTHO05D007279 1.8e-208 729.9 658 59.9
BolC3t16404H Brassica oleracea HOM05D005810 ORTHO05D007279 2.0e-207 726.5 652 60.3
BcaC01g04347 Brassica carinata HOM05D005810 ORTHO05D007279 4.5e-207 725.3 653 60.2
Carub.0003s0400 Capsella rubella HOM05D005810 ORTHO05D007279 4.5e-207 725.3 629 61.0
Phvul.006G100200 Phaseolus vulgaris HOM05D005810 ORTHO05D007279 7.7e-207 724.5 668 59.4
A03p33850 Brassica napus HOM05D005810 ORTHO05D007279 1.0e-206 724.2 671 58.7
MD12G1237800 Malus domestica HOM05D005810 ORTHO05D007279 2.2e-206 723.0 585 64.8
BraA03t12559Z Brassica rapa HOM05D005810 ORTHO05D007279 5.0e-206 721.8 665 59.1
Glyma.19G243400 Glycine max HOM05D005810 ORTHO05D007279 1.5e-205 720.3 641 61.5
Lsat_1_v5_gn_5_37760 Lactuca sativa HOM05D005810 ORTHO05D007279 6.3e-201 704.9 541 67.5
Psat3g008040 Pisum sativum HOM05D005810 ORTHO05D007279 7.0e-200 701.4 664 59.6
AUR62004921 Chenopodium quinoa HOM05D005810 ORTHO05D007279 3.5e-199 699.1 663 56.6
Medtr7g114850 Medicago truncatula HOM05D005810 ORTHO05D007279 1.2e-196 690.6 663 58.1
Hund06958 Selenicereus undatus HOM05D005810 ORTHO05D007279 3.4e-194 682.6 653 57.9
CDE05G3473 Ceratophyllum demersum HOM05D005810 ORTHO05D007279 1.3e-190 670.6 666 57.5
CiPaw.07G064800 Carya illinoinensis HOM05D005810 ORTHO05D007279 1.5e-189 667.2 504 67.9
ATR0665G477 Amborella trichopoda HOM05D005810 ORTHO05D007279 3.5e-183 646.0 685 52.3
Sc09g0003830 Simmondsia chinensis HOM05D005810 ORTHO05D007279 1.9e-181 640.2 491 67.6
Lj7C488G4 Lonicera japonica HOM05D005810 ORTHO05D007279 4.0e-179 632.5 679 55.2
Manes.08G132300 Manihot esculenta HOM05D005810 ORTHO05D007279 4.0e-179 632.5 510 65.3
TPR.G6991 Trifolium pratense HOM05D005810 ORTHO05D007279 3.0e-174 616.3 560 61.1
Cc02_g31830 Coffea canephora HOM05D005810 ORTHO05D007279 3.9e-174 615.9 464 69.6
Manes.09G154600 Manihot esculenta HOM05D005810 ORTHO05D007279 9.5e-173 611.3 466 68.5
MBI11_g10322_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 1.8e-171 607.1 671 53.9
unitig_37.g12634 Utricularia gibba HOM05D005810 ORTHO05D007279 3.4e-170 602.8 672 52.5
HPP92_028013 Vanilla planifolia HOM05D005810 ORTHO05D007279 1.3e-169 600.9 655 52.1
FAN05G1843 Fragaria x ananassa HOM05D005810 ORTHO05D007279 2.2e-169 600.1 659 53.3
CsaV3_1G045590 Cucumis sativus L. HOM05D005810 ORTHO05D007279 3.7e-169 599.4 497 63.6
Zm00001eb328420 Zea mays HOM05D005810 ORTHO05D007279 1.3e-166 590.9 662 51.5
Atru.chr2.784 Acer truncatum HOM05D005810 ORTHO05D007279 2.8e-164 583.2 416 71.4
Solyc01g097600.2 Solanum lycopersicum HOM05D005810 ORTHO05D007279 1.8e-163 580.5 324 91.4
Sopen01g041230 Solanum pennellii HOM05D005810 ORTHO05D007279 1.2e-162 577.8 324 91.0
Pp3c18_8560 Physcomitrium patens HOM05D005810 ORTHO05D007279 1.9e-157 560.5 690 46.4
TAR365G0727 Trochodendron aralioides HOM05D005810 ORTHO05D007279 2.6e-154 550.1 492 62.0
Mapoly0092s0013 Marchantia polymorpha HOM05D005810 ORTHO05D007279 6.2e-148 528.9 693 45.2
Eucgr.B02108 Eucalyptus grandis HOM05D005810 ORTHO05D007279 3.5e-143 513.1 445 61.3
SMO351G0210 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 2.9e-137 493.4 681 42.4
Haze_04339 Corylus avellana HOM05D005810 ORTHO05D007279 1.3e-124 451.4 363 64.5
Oeu060673.3 Olea europaea HOM05D005810 ORTHO05D007279 4.9e-121 439.5 744 40.9
Zm00001eb352870 Zea mays HOM05D005810 ORTHO05D007279 1.1e-115 421.8 388 61.9
FAN14G4259 Fragaria x ananassa HOM05D005810 ORTHO05D007279 3.0e-110 403.7 322 64.6
FAN05G0700 Fragaria x ananassa HOM05D005810 ORTHO05D007279 1.3e-108 398.3 322 64.3
Nitab4.5_0005729g0070 Nicotiana tabacum HOM05D005810 ORTHO05D007279 2.2e-108 397.5 244 86.5
FAN02G1150 Fragaria x ananassa HOM05D005810 ORTHO05D007279 3.4e-106 390.2 322 63.0
Os05g0509300 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 7.7e-106 389.0 339 62.2
CBR_g36821 Chara braunii HOM05D005810 ORTHO05D007279 2.5e-104 384.0 737 35.0
MCO09G788 Micromonas commoda HOM05D005810 ORTHO05D007279 3.2e-104 383.6 730 35.6
SMO364G0521 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 3.2e-96 357.1 675 36.6
Dinv13660 Davidia involucrata HOM05D005810 ORTHO05D007279 4.4e-93 346.7 304 62.8
Dinv13659 Davidia involucrata HOM05D005810 ORTHO05D007279 1.7e-92 344.7 285 64.9
PRCOL_00005025 Prasinoderma coloniale HOM05D005810 ORTHO05D007279 2.7e-87 327.4 695 32.9
Nitab4.5_0005729g0080 Nicotiana tabacum HOM05D005810 ORTHO05D007279 2.3e-78 297.7 206 75.7
CsaV3_UNG004080 Cucumis sativus L. HOM05D005810 ORTHO05D007279 1.7e-76 291.6 237 63.7
Os01g0773000 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 4.8e-76 290.0 296 53.0
AagrBONN_evm.TU.Sc2ySwM_362.2883 Anthoceros agrestis HOM05D005810 ORTHO05D007279 3.5e-74 283.9 317 50.8
Haze_04340 Corylus avellana HOM05D005810 ORTHO05D007279 1.8e-67 261.5 254 55.9
Nitab4.5_0005729g0060 Nicotiana tabacum HOM05D005810 ORTHO05D007279 2.3e-65 254.6 166 80.7
AagrBONN_evm.TU.Sc2ySwM_362.2882 Anthoceros agrestis HOM05D005810 ORTHO05D007279 5.6e-64 250.0 313 44.7
Zm00001eb281050 Zea mays HOM05D005810 ORTHO05D007279 4.4e-61 240.4 165 73.3
Zm00001eb054900 Zea mays HOM05D005810 ORTHO05D007279 2.7e-58 231.1 173 68.8
Cre01.g007651 Chlamydomonas reinhardtii HOM05D005810 ORTHO05D007279 4.6e-58 230.3 650 29.7
Cc02_g31840 Coffea canephora HOM05D005810 ORTHO05D007279 8.3e-52 209.5 196 60.2
Sopen01g041220 Solanum pennellii HOM05D005810 ORTHO05D007279 1.1e-51 209.1 131 87.0
SGA_v2.0_scaffold92G28303 Striga asiatica HOM05D005810 ORTHO05D007279 4.6e-50 203.8 165 63.6
Atru.chr2.785 Acer truncatum HOM05D005810 ORTHO05D007279 1.2e-45 189.1 139 64.7
HPP92_018612 Vanilla planifolia HOM05D005810 ORTHO05D007279 3.2e-43 181.0 162 59.3
SHI07783 Sapria himalayana HOM05D000023 ORTHO05D000014 2.3e-33 148.3 125 60.0
TPR.G21485 Trifolium pratense HOM05D005810 ORTHO05D007279 1.4e-30 139.0 141 52.5
ClCG06G009160 Citrullus lanatus HOM05D005810 ORTHO05D007279 1.2e-26 125.9 149 51.0
Hma1.2p1_0083F.1_g042850 Hydrangea macrophylla HOM05D005810 ORTHO05D007279 1.7e-25 122.1 134 56.0
CsaV3_UNG004060 Cucumis sativus L. HOM05D005810 ORTHO05D007279 3.6e-23 114.4 137 52.6
CsaV3_1G045610 Cucumis sativus L. HOM05D005810 ORTHO05D007279 1.1e-22 112.8 138 52.2
FAN09G1409 Fragaria x ananassa HOM05D005810 ORTHO05D007279 2.0e-21 108.6 151 48.3
Mapoly0027s0098 Marchantia polymorpha HOM05D005810 ORTHO05D007279 9.3e-11 73.2 76 50.0
Mapoly0081s0042 Marchantia polymorpha HOM05D005810 ORTHO05D007279 1.2e-10 72.8 51 64.7
MBI11_g02497_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 1.6e-10 72.4 81 54.3
Lsat_1_v5_gn_5_94521 Lactuca sativa HOM05D000428 ORTHO05D022850 1.6e-07 62.4 71 50.7


User provided reference genes

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