Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1330.32 Capsicum annuum HOM05D005978 ORTHO05D007472 0.0e+00 2288.8 1188 100.0
Sopen04g036610 Solanum pennellii HOM05D005978 ORTHO05D007472 0.0e+00 2053.1 1183 89.1
Solyc04g082980.2 Solanum lycopersicum HOM05D005978 ORTHO05D007472 0.0e+00 1758.8 1123 83.0
Peaxi162Scf00385g01220 Petunia axillaris HOM05D005978 ORTHO05D007472 0.0e+00 1573.5 1224 68.4
Dinv30321 Davidia involucrata HOM05D005978 ORTHO05D007472 0.0e+00 1494.9 1183 64.3
Actinidia15540 Actinidia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1437.2 1184 62.7
Cc10_g00090 Coffea canephora HOM05D005978 ORTHO05D007472 0.0e+00 1421.0 1183 61.8
TAR376G0648 Trochodendron aralioides HOM05D005978 ORTHO05D007472 0.0e+00 1406.0 1176 59.9
Migut.M00377 Erythranthe guttata HOM05D005978 ORTHO05D007472 0.0e+00 1388.6 1181 59.8
MSTRG.14837 Avicennia marina HOM05D005978 ORTHO05D007472 0.0e+00 1387.5 1180 60.2
GSVIVG01013460001 Vitis vinifera HOM05D005978 ORTHO05D007472 0.0e+00 1381.3 1184 60.4
Manes.18G000350 Manihot esculenta HOM05D005978 ORTHO05D007472 0.0e+00 1362.1 1182 57.0
CiPaw.08G079000 Carya illinoinensis HOM05D005978 ORTHO05D007472 0.0e+00 1349.0 1185 57.2
Atru.chr13.20 Acer truncatum HOM05D005978 ORTHO05D007472 0.0e+00 1347.4 1183 57.7
Ciclev10003766m.g Citrus clementina HOM05D005978 ORTHO05D007472 0.0e+00 1337.0 1182 57.6
Nn6g31553 Nelumbo nucifera HOM05D005978 ORTHO05D007472 0.0e+00 1336.6 1181 55.9
Thecc.08G097500 Theobroma cacao HOM05D005978 ORTHO05D007472 0.0e+00 1319.7 1174 57.2
HanXRQChr16g0512201 Helianthus annuus HOM05D005978 ORTHO05D007472 0.0e+00 1318.9 1189 58.8
MD06G1000600 Malus domestica HOM05D005978 ORTHO05D007472 0.0e+00 1317.0 1190 57.1
TWI36G1144 Tripterygium wilfordii HOM05D005978 ORTHO05D007472 0.0e+00 1314.7 1167 56.9
QL02p016300 Quercus lobata HOM05D005978 ORTHO05D007472 0.0e+00 1314.3 1399 50.0
Rhsim06G0000600 Rhododendron simsii HOM05D005978 ORTHO05D007472 0.0e+00 1313.9 1393 52.5
Potri.002G001700 Populus trichocarpa HOM05D005978 ORTHO05D007472 0.0e+00 1310.8 1176 55.7
RcHm_v2.0_Chr7g0217581 Rosa chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1308.5 1190 56.6
Haze_22888 Corylus avellana HOM05D005978 ORTHO05D007472 0.0e+00 1306.2 1136 58.5
SalBow7G3859 Salvia bowleyana HOM05D005978 ORTHO05D007472 0.0e+00 1306.2 1181 56.7
ECA232G2674 Erigeron canadensis HOM05D005978 ORTHO05D007472 0.0e+00 1301.2 1183 58.4
Prupe.5G001100 Prunus persica HOM05D005978 ORTHO05D007472 0.0e+00 1292.7 1190 57.0
Gorai.009G185700 Gossypium raimondii HOM05D005978 ORTHO05D007472 0.0e+00 1291.6 1187 56.3
Lsat_1_v5_gn_9_48081 Lactuca sativa HOM05D005978 ORTHO05D007472 0.0e+00 1281.2 1172 58.6
FAN18G0791 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1280.0 1179 56.2
FvH4_5g26690 Fragaria vesca HOM05D005978 ORTHO05D007472 0.0e+00 1279.6 1179 56.2
Glyma.01G245200 Glycine max HOM05D005978 ORTHO05D007472 0.0e+00 1278.5 1185 54.5
Sabra02G0001200 Salix brachista HOM05D005978 ORTHO05D007472 0.0e+00 1272.3 1216 53.5
Medtr5g004660 Medicago truncatula HOM05D005978 ORTHO05D007472 0.0e+00 1269.6 1166 55.1
FAN13G0154 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1267.3 1182 55.8
CANSAT64G0954 Cannabis sativa HOM05D005978 ORTHO05D007472 0.0e+00 1261.5 1196 54.8
TPR.G21607 Trifolium pratense HOM05D005978 ORTHO05D007472 0.0e+00 1258.8 1163 54.8
Lalb_Chr16g0376221 Lupinus albus HOM05D005978 ORTHO05D007472 0.0e+00 1254.2 1184 53.2
Phvul.002G054600 Phaseolus vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1253.8 1166 54.0
Eucgr.F03624 Eucalyptus grandis HOM05D005978 ORTHO05D007472 0.0e+00 1241.1 1184 53.7
arahy.Tifrunner.gnm1.ann1.BP04P6 Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1238.4 1165 53.5
FAN04G0649 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1238.0 1182 54.8
Lj1g0010496 Lotus japonicus HOM05D005978 ORTHO05D007472 0.0e+00 1236.5 1186 53.5
Hund05194 Selenicereus undatus HOM05D005978 ORTHO05D007472 0.0e+00 1235.7 1181 56.2
PSO675G6081 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1230.3 1184 53.0
PSO541G4404 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1228.0 1184 52.9
Duzib041G0071 Durio zibethinus HOM05D005978 ORTHO05D007472 0.0e+00 1226.1 1184 54.1
SGA_v2.0_scaffold34G13893 Striga asiatica HOM05D005978 ORTHO05D007472 0.0e+00 1223.0 1137 55.9
PGR031G1913 Punica granatum HOM05D005978 ORTHO05D007472 0.0e+00 1221.1 1181 53.1
Cpa.g.sc36.98 Carica papaya HOM05D005978 ORTHO05D007472 0.0e+00 1215.3 1205 52.9
COL.COLO4_12265 Corchorus olitorius HOM05D005978 ORTHO05D007472 0.0e+00 1215.3 1177 54.4
arahy.Tifrunner.gnm1.ann1.U7IYJM Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1206.0 1165 52.7
ClCG11G019200 Citrullus lanatus HOM05D005978 ORTHO05D007472 0.0e+00 1200.7 1223 51.4
AL2G36770 Arabidopsis lyrata HOM05D005978 ORTHO05D007472 0.0e+00 1199.5 1177 53.0
Sed0020914 Sechium edule HOM05D005978 ORTHO05D007472 0.0e+00 1198.7 1184 53.8
AUR62042533 Chenopodium quinoa HOM05D005978 ORTHO05D007472 0.0e+00 1197.2 1182 53.3
EL10Ac1g01856 Beta vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1194.9 1181 54.9
MBI04_g23900_MAGBIO Magnolia biondii HOM05D005978 ORTHO05D007472 0.0e+00 1194.1 1221 51.3
AT1G76630 Arabidopsis thaliana HOM05D005978 ORTHO05D007472 0.0e+00 1185.2 1177 52.3
Nitab4.5_0003364g0020 Nicotiana tabacum HOM05D005978 ORTHO05D007472 0.0e+00 1183.3 795 78.4
C06p50880 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 1171.8 1172 52.3
BraA07t31758Z Brassica rapa HOM05D005978 ORTHO05D007472 0.0e+00 1166.0 1173 52.2
CARHR070190 Cardamine hirsuta HOM05D005978 ORTHO05D007472 0.0e+00 1166.0 1179 51.6
A07p42300 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 1163.3 1179 52.3
Aqoxy1G03258 Aquilegia oxysepala HOM05D005978 ORTHO05D007472 0.0e+00 1159.4 1165 51.4
Sc26g0004780 Simmondsia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1157.9 1179 52.3
BolC6t40113H Brassica oleracea HOM05D005978 ORTHO05D007472 0.0e+00 1157.5 1172 52.0
BcaC08g47227 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 1156.4 1171 52.0
MELO3C017073.2 Cucumis melo HOM05D005978 ORTHO05D007472 0.0e+00 1140.6 1186 50.7
BcaC08g47175 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 1138.3 1178 51.1
Psat4g213520 Pisum sativum HOM05D005978 ORTHO05D007472 0.0e+00 1134.0 1054 55.1
Sp5g31790 Schrenkiella parvula HOM05D005978 ORTHO05D007472 0.0e+00 1132.1 1171 50.4
Gohir.A05G177300 Gossypium hirsutum HOM05D005978 ORTHO05D007472 0.0e+00 1130.2 1038 56.0
CsaV3_4G037800 Cucumis sativus L. HOM05D005978 ORTHO05D007472 0.0e+00 1127.5 1185 50.4
Carub.0002s2353 Capsella rubella HOM05D005978 ORTHO05D007472 0.0e+00 1121.3 1171 50.0
Ca_24335_v3 Cicer arietinum L. HOM05D005978 ORTHO05D007472 0.0e+00 1115.5 1042 54.3
Thhalv10018029m.g Eutrema salsugineum HOM05D005978 ORTHO05D007472 0.0e+00 1104.0 1180 49.6
THA.LOC104812025 Tarenaya hassleriana HOM05D005978 ORTHO05D007472 0.0e+00 1091.6 1185 49.8
HPP92_007456 Vanilla planifolia HOM05D005978 ORTHO05D007472 3.5e-305 1052.0 1186 47.5
Aa31LG4G6720 Aethionema arabicum HOM05D005978 ORTHO05D007472 1.7e-304 1049.7 1180 47.5
Os10g0548200 Oryza sativa ssp. japonica HOM05D005978 ORTHO05D007472 3.2e-298 1028.9 1185 48.1
ATR0605G322 Amborella trichopoda HOM05D005978 ORTHO05D007472 2.9e-291 1005.7 1127 48.6
Zm00001eb022830 Zea mays HOM05D005978 ORTHO05D007472 1.6e-286 989.9 1184 45.5
SEGI_31935 Sequoiadendron giganteum HOM05D005978 ORTHO05D007472 2.1e-286 989.6 1185 44.9
AUR62035192 Chenopodium quinoa HOM05D005978 ORTHO05D007472 2.7e-281 972.6 1166 47.5
FAN08G2840 Fragaria x ananassa HOM05D005978 ORTHO05D007472 3.0e-280 969.1 1111 48.6
CSS0007221 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 4.3e-271 938.7 755 65.2
DCAR_022963 Daucus carota HOM05D005978 ORTHO05D007472 5.4e-266 921.8 847 58.9
unitig_899.g15248 Utricularia gibba HOM05D005978 ORTHO05D007472 1.8e-240 837.0 1111 44.6
Gohir.D05G180700 Gossypium hirsutum HOM05D005978 ORTHO05D007472 6.1e-217 758.8 717 54.5
Ah.11g042550 Amaranthus hybridus HOM05D005978 ORTHO05D007472 1.8e-213 747.3 787 51.1
Oeu013500.1 Olea europaea HOM05D005978 ORTHO05D007472 9.2e-197 691.8 582 59.5
Mapoly0002s0268 Marchantia polymorpha HOM05D005978 ORTHO05D007472 1.3e-179 634.8 1204 35.0
Dinv04441 Davidia involucrata HOM05D005978 ORTHO05D007472 4.9e-158 563.1 438 64.6
Nitab4.5_0003364g0080 Nicotiana tabacum HOM05D005978 ORTHO05D007472 3.8e-150 537.0 435 67.6
Pp3c9_11110 Physcomitrium patens HOM05D005978 ORTHO05D007472 2.1e-148 531.2 1202 33.2
Dinv04443 Davidia involucrata HOM05D005978 ORTHO05D007472 1.2e-143 515.4 462 55.2
CDE04G2732 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 3.1e-136 490.7 650 44.9
vmacro21736 Vaccinium macrocarpon HOM05D005978 ORTHO05D007472 4.5e-127 460.3 392 59.2
SMO236G0050 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 1.6e-116 425.2 1109 30.1
AagrBONN_evm.TU.Sc2ySwM_228.3882 Anthoceros agrestis HOM05D005978 ORTHO05D007472 1.7e-113 415.2 846 33.3
SMO236G0024 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 9.1e-96 356.3 519 38.9
SHI07937 Sapria himalayana HOM05D005978 ORTHO05D007472 4.0e-91 340.9 307 56.0
Ah.11g042540 Amaranthus hybridus HOM05D005978 ORTHO05D007472 2.6e-90 338.2 426 43.0
Nn6g31559 Nelumbo nucifera HOM05D005978 ORTHO05D007472 1.4e-80 305.8 214 67.3
Oeu013502.1 Olea europaea HOM05D005978 ORTHO05D007472 8.9e-67 260.0 190 65.3
CBR_g3864 Chara braunii HOM05D000019 ORTHO05D000048 3.5e-63 248.1 1121 26.6
Gohir.D05G180650 Gossypium hirsutum HOM05D005978 ORTHO05D007472 1.8e-59 235.7 204 58.3
Dinv04442 Davidia involucrata HOM05D005978 ORTHO05D007472 2.6e-50 205.3 176 61.4
CDE04G3357 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 7.6e-50 203.8 274 40.9
arahy.Tifrunner.gnm1.ann1.G030KM Arachis hypogaea HOM05D005978 ORTHO05D007472 1.0e-38 166.8 217 47.5
CSS0044033 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 3.2e-32 145.2 121 62.8
SHI07938 Sapria himalayana HOM05D005978 ORTHO05D007472 4.0e-27 128.3 157 43.3
SMO124G0009 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 1.1e-24 120.2 181 34.8
Solyc04g082990.3 Solanum lycopersicum HOM05D005978 ORTHO05D004271 3.9e-22 111.7 75 72.0
Cre12.g493550 Chlamydomonas reinhardtii HOM05D005978 ORTHO05D007472 1.5e-18 99.8 356 25.6
MCO08G135 Micromonas commoda HOM05D005978 ORTHO05D007472 2.0e-18 99.4 436 24.5
Rhsim06G0014600 Rhododendron simsii HOM05D000267 ORTHO05D002764 2.5e-16 92.4 107 46.7
arahy.Tifrunner.gnm1.ann1.IN83YX Arachis hypogaea HOM05D005978 ORTHO05D007472 1.8e-14 86.3 55 70.9
arahy.Tifrunner.gnm1.ann1.HEP796 Arachis hypogaea HOM05D005978 ORTHO05D007472 2.5e-13 82.4 53 69.8
TAR628G1490 Trochodendron aralioides HOM05D005978 ORTHO05D007472 2.8e-12 79.0 58 60.3
Prupe.4G218400 Prunus persica HOM05D005978 ORTHO05D007472 5.9e-10 71.2 51 70.6
C07p29320 Brassica napus HOM05D005978 ORTHO05D007472 8.8e-06 57.4 46 50.0
TAR365G1006 Trochodendron aralioides HOM05D001130 ORTHO05D001052 8.8e-06 57.4 138 28.3


User provided reference genes

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