Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1310.4 Capsicum annuum HOM05D003777 ORTHO05D004690 6.8e-51 203.8 106 100.0
CAN.G1295.1 Capsicum annuum HOM05D003777 ORTHO05D004690 1.3e-41 172.9 106 86.8
Solyc11g062270.2 Solanum lycopersicum HOM05D003777 ORTHO05D004690 8.6e-38 160.2 92 91.3
Sopen11g024250 Solanum pennellii HOM05D003777 ORTHO05D004690 8.6e-38 160.2 92 91.3
PGSC0003DMG400032494 Solanum tuberosum HOM05D003777 ORTHO05D004690 2.5e-37 158.7 92 90.2
Nitab4.5_0002026g0090 Nicotiana tabacum HOM05D003777 ORTHO05D004690 4.7e-36 154.5 92 89.1
Nitab4.5_0000492g0120 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.0e-35 153.3 92 88.0
CAN.G487.1 Capsicum annuum HOM05D003777 ORTHO05D004690 2.3e-35 152.1 91 87.9
Peaxi162Scf00029g02527 Petunia axillaris HOM05D003777 ORTHO05D004690 4.0e-35 151.4 92 88.0
Nitab4.5_0002757g0020 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.5e-34 149.4 92 85.9
GSVIVG01010320001 Vitis vinifera HOM05D003777 ORTHO05D004690 9.8e-34 146.7 92 83.7
QL03p055332 Quercus lobata HOM05D003777 ORTHO05D004690 4.1e-32 141.4 92 81.5
TAR622G0547 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.2e-31 139.8 90 81.1
PGR102G0273 Punica granatum HOM05D003777 ORTHO05D004690 4.6e-31 137.9 92 79.3
Actinidia08096 Actinidia chinensis HOM05D003777 ORTHO05D004690 5.9e-31 137.5 92 76.1
arahy.Tifrunner.gnm1.ann1.35MH8V Arachis hypogaea HOM05D003777 ORTHO05D004690 5.9e-31 137.5 92 78.3
arahy.Tifrunner.gnm1.ann1.SED4J7 Arachis hypogaea HOM05D003777 ORTHO05D004690 5.9e-31 137.5 92 78.3
CSS0004768 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 5.9e-31 137.5 92 76.1
CSS0018349 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 5.9e-31 137.5 92 76.1
Cpa.g.sc86.2 Carica papaya HOM05D003777 ORTHO05D004690 5.9e-31 137.5 92 78.3
PSO063G1619 Papaver somniferum HOM05D003777 ORTHO05D004690 1.3e-30 136.3 92 75.0
Rhsim12G0035800 Rhododendron simsii HOM05D003777 ORTHO05D004690 1.3e-30 136.3 92 76.1
TAR374G0928 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.3e-30 136.3 92 78.3
TAR374G1267 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.3e-30 136.3 92 78.3
CSS0039153 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 2.3e-30 135.6 92 75.0
arahy.Tifrunner.gnm1.ann1.238UV6 Arachis hypogaea HOM05D003777 ORTHO05D004690 3.0e-30 135.2 92 77.2
arahy.Tifrunner.gnm1.ann1.9WV3XJ Arachis hypogaea HOM05D003777 ORTHO05D004690 3.0e-30 135.2 92 77.2
PSO170G4787 Papaver somniferum HOM05D003777 ORTHO05D004690 3.0e-30 135.2 92 73.9
TWI36G1566 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 3.0e-30 135.2 92 76.1
Actinidia30683 Actinidia chinensis HOM05D003777 ORTHO05D004690 3.9e-30 134.8 92 73.9
Duzib248G0478 Durio zibethinus HOM05D003777 ORTHO05D004690 3.9e-30 134.8 92 79.3
Lsat_1_v5_gn_2_96961 Lactuca sativa HOM05D003777 ORTHO05D004690 3.9e-30 134.8 92 75.0
SGA_v2.0_scaffold247G44863 Striga asiatica HOM05D003777 ORTHO05D004690 3.9e-30 134.8 92 75.0
Oeu015952.1 Olea europaea HOM05D003777 ORTHO05D004690 5.0e-30 134.4 92 77.2
vmacro01091 Vaccinium macrocarpon HOM05D003777 ORTHO05D004690 5.0e-30 134.4 92 75.0
DCAR_021624 Daucus carota HOM05D003777 ORTHO05D004690 6.6e-30 134.0 92 73.9
Thecc.02G272700 Theobroma cacao HOM05D003777 ORTHO05D004690 8.6e-30 133.7 92 78.3
CiPaw.05G173500 Carya illinoinensis HOM05D003777 ORTHO05D004690 1.1e-29 133.3 92 77.2
Migut.D00587 Erythranthe guttata HOM05D003777 ORTHO05D004690 1.1e-29 133.3 92 76.1
Lalb_Chr12g0206411 Lupinus albus HOM05D003777 ORTHO05D004690 1.1e-29 133.3 92 78.3
Lalb_Chr12g0206441 Lupinus albus HOM05D003777 ORTHO05D004690 1.1e-29 133.3 92 78.3
Lalb_Chr12g0206461 Lupinus albus HOM05D003777 ORTHO05D004690 1.1e-29 133.3 92 78.3
Phvul.002G176900 Phaseolus vulgaris HOM05D003777 ORTHO05D004690 1.1e-29 133.3 92 75.0
VMungo0251G0828 Vigna mungo HOM05D003777 ORTHO05D004690 1.5e-29 132.9 92 75.0
unitig_744.g24046 Utricularia gibba HOM05D003777 ORTHO05D004690 1.9e-29 132.5 92 73.9
AUR62017151 Chenopodium quinoa HOM05D003777 ORTHO05D004690 2.5e-29 132.1 92 75.0
ECA233G1683 Erigeron canadensis HOM05D003777 ORTHO05D004690 3.3e-29 131.7 92 76.1
Glyma.08G101100 Glycine max HOM05D003777 ORTHO05D004690 3.3e-29 131.7 92 75.0
Manes.13G014300 Manihot esculenta HOM05D003777 ORTHO05D004690 3.3e-29 131.7 92 72.8
TWI75G0300 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 3.3e-29 131.7 92 73.9
Atru.chr11.2223 Acer truncatum HOM05D003777 ORTHO05D004690 4.3e-29 131.3 92 73.9
MSTRG.12471 Avicennia marina HOM05D003777 ORTHO05D004690 4.3e-29 131.3 92 76.1
Duzib268G0959 Durio zibethinus HOM05D003777 ORTHO05D004690 5.6e-29 131.0 92 77.2
Potri.006G216400 Populus trichocarpa HOM05D003777 ORTHO05D004690 5.6e-29 131.0 92 72.8
ClCG05G026250 Citrullus lanatus HOM05D003777 ORTHO05D004690 7.3e-29 130.6 92 75.0
Psat7g080080 Pisum sativum HOM05D003777 ORTHO05D004690 7.3e-29 130.6 92 76.1
TPR.G27143 Trifolium pratense HOM05D003777 ORTHO05D004690 7.3e-29 130.6 92 75.0
Aa31LG4G12090 Aethionema arabicum HOM05D003777 ORTHO05D004690 9.5e-29 130.2 90 73.3
Dinv18168 Davidia involucrata HOM05D003777 ORTHO05D004690 9.5e-29 130.2 92 72.8
Glyma.05G144700 Glycine max HOM05D003777 ORTHO05D004690 9.5e-29 130.2 92 73.9
CsaV3_5G030580 Cucumis sativus L. HOM05D003777 ORTHO05D004690 1.6e-28 129.4 92 75.0
Nitab4.5_0001925g0190 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.6e-28 129.4 81 84.0
MELO3C011898.2 Cucumis melo HOM05D003777 ORTHO05D004690 2.1e-28 129.0 92 73.9
Sed0005823 Sechium edule HOM05D003777 ORTHO05D004690 4.7e-28 127.9 90 73.3
Sc04g0009890 Simmondsia chinensis HOM05D003777 ORTHO05D004690 4.7e-28 127.9 92 72.8
THA.LOC104825526 Tarenaya hassleriana HOM05D003777 ORTHO05D004690 4.7e-28 127.9 90 73.3
Ciclev10030955m.g Citrus clementina HOM05D003777 ORTHO05D004690 6.2e-28 127.5 92 75.0
COL.COLO4_23602 Corchorus olitorius HOM05D003777 ORTHO05D004690 6.2e-28 127.5 87 75.9
DCAR_021625 Daucus carota HOM05D003777 ORTHO05D004690 6.2e-28 127.5 92 70.7
Gohir.D05G312600 Gossypium hirsutum HOM05D003777 ORTHO05D004690 6.2e-28 127.5 92 75.0
Gorai.009G334100 Gossypium raimondii HOM05D003777 ORTHO05D004690 6.2e-28 127.5 92 75.0
Aqoxy5G03557 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 8.0e-28 127.1 92 68.5
Hund25014 Selenicereus undatus HOM05D003777 ORTHO05D004690 8.0e-28 127.1 92 72.8
AT1G67680 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 1.0e-27 126.7 90 71.1
Cfa009302 Carpinus fangiana HOM05D003777 ORTHO05D004690 1.0e-27 126.7 92 72.8
Sed0021346 Sechium edule HOM05D003777 ORTHO05D004690 1.4e-27 126.3 92 71.7
Gohir.A05G311500 Gossypium hirsutum HOM05D003777 ORTHO05D004690 1.8e-27 125.9 92 73.9
TPR.G17105 Trifolium pratense HOM05D003777 ORTHO05D004690 1.8e-27 125.9 90 74.4
Haze_17766 Corylus avellana HOM05D001576 ORTHO05D000401 4.0e-27 124.8 91 72.5
Sabra06G0166800 Salix brachista HOM05D003777 ORTHO05D004690 5.2e-27 124.4 92 70.7
AUR62035656 Chenopodium quinoa HOM05D003777 ORTHO05D004690 6.8e-27 124.0 92 70.7
CANSAT01G1767 Cannabis sativa HOM05D003777 ORTHO05D004690 8.9e-27 123.6 92 70.7
Manes.12G016400 Manihot esculenta HOM05D003777 ORTHO05D004690 1.2e-26 123.2 92 67.4
Aqoxy6G02118 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 4.4e-26 121.3 92 68.5
Medtr8g079990 Medicago truncatula HOM05D003777 ORTHO05D004690 5.8e-26 120.9 92 71.7
Psat3g102200 Pisum sativum HOM05D003777 ORTHO05D004690 7.5e-26 120.6 92 70.7
Psat5g044680 Pisum sativum HOM05D003777 ORTHO05D004690 1.3e-25 119.8 92 70.7
MD16G1110000 Malus domestica HOM05D003777 ORTHO05D004690 1.7e-25 119.4 92 67.4
Sp5g22670 Schrenkiella parvula HOM05D003777 ORTHO05D004690 1.7e-25 119.4 90 64.4
HPP92_012793 Vanilla planifolia HOM05D003777 ORTHO05D004690 1.7e-25 119.4 94 62.8
SHI17928 Sapria himalayana HOM05D003777 ORTHO05D004690 2.9e-25 118.6 90 68.9
BcaC08g46176 Brassica carinata HOM05D003777 ORTHO05D004690 6.4e-25 117.5 90 64.4
C06p42580 Brassica napus HOM05D003777 ORTHO05D004690 6.4e-25 117.5 90 64.4
BolC6t39181H Brassica oleracea HOM05D003777 ORTHO05D004690 6.4e-25 117.5 90 64.4
Prupe.1G234800 Prunus persica HOM05D003777 ORTHO05D004690 6.4e-25 117.5 92 66.3
BcaB03g15177 Brassica carinata HOM05D003777 ORTHO05D004690 8.3e-25 117.1 90 63.3
A07p34190 Brassica napus HOM05D003777 ORTHO05D004690 8.3e-25 117.1 90 63.3
BraA07t31048Z Brassica rapa HOM05D003777 ORTHO05D004690 8.3e-25 117.1 90 63.3
Dinv11003 Davidia involucrata HOM05D003777 ORTHO05D004690 8.3e-25 117.1 92 66.3
Hma1.2p1_0079F.1_g041650 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 8.3e-25 117.1 92 67.4
EL10Ac9g22111 Beta vulgaris HOM05D003777 ORTHO05D004690 1.1e-24 116.7 92 68.5
A07p32470 Brassica napus HOM05D003777 ORTHO05D004690 1.9e-24 115.9 90 64.4
Thhalv10018246m.g Eutrema salsugineum HOM05D003777 ORTHO05D004690 1.9e-24 115.9 90 63.3
Lj4g0007172 Lotus japonicus HOM05D003777 ORTHO05D004690 1.9e-24 115.9 92 68.5
Eucgr.B03455 Eucalyptus grandis HOM05D003777 ORTHO05D004690 2.4e-24 115.5 92 66.3
BolC6t38947H Brassica oleracea HOM05D003777 ORTHO05D004690 7.0e-24 114.0 89 62.9
CDE07G0923 Ceratophyllum demersum HOM05D003777 ORTHO05D004690 7.0e-24 114.0 93 61.3
Ah.10g034950 Amaranthus hybridus HOM05D003777 ORTHO05D004690 9.2e-24 113.6 92 65.2
BraA07t30871Z Brassica rapa HOM05D003777 ORTHO05D004690 9.2e-24 113.6 93 59.1
AL2G26380 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 1.2e-23 113.2 90 64.4
MD13G1110100 Malus domestica HOM05D003777 ORTHO05D004690 3.5e-23 111.7 92 62.0
ATR0824G106 Amborella trichopoda HOM05D003777 ORTHO05D004690 7.8e-23 110.5 94 59.6
Carub.0002s1406 Capsella rubella HOM05D003777 ORTHO05D004690 7.8e-23 110.5 94 62.8
C06p38540 Brassica napus HOM05D003777 ORTHO05D004690 1.0e-22 110.2 90 58.9
Lj2C633G4 Lonicera japonica HOM05D003777 ORTHO05D004690 1.7e-22 109.4 82 68.3
Lalb_Chr07g0187251 Lupinus albus HOM05D003777 ORTHO05D004690 6.6e-22 107.5 70 81.4
Ca_18071_v3 Cicer arietinum L. HOM05D003777 ORTHO05D004690 1.5e-21 106.3 92 65.2
CARHR060270 Cardamine hirsuta HOM05D003777 ORTHO05D004690 1.9e-21 105.9 94 61.7
FAN07G0030 Fragaria x ananassa HOM05D003777 ORTHO05D004690 2.5e-21 105.5 92 59.8
FAN17G2971 Fragaria x ananassa HOM05D003777 ORTHO05D004690 2.5e-21 105.5 92 59.8
RcHm_v2.0_Chr4g0431561 Rosa chinensis HOM05D003777 ORTHO05D004690 2.5e-21 105.5 91 62.6
RcHm_v2.0_Chr4g0431581 Rosa chinensis HOM05D003777 ORTHO05D004690 2.5e-21 105.5 91 62.6
PGSC0003DMG400024133 Solanum tuberosum HOM05D003777 ORTHO05D004690 2.5e-21 105.5 60 90.0
FAN22G1648 Fragaria x ananassa HOM05D003777 ORTHO05D004690 3.3e-21 105.1 92 59.8
FvH4_4g24580 Fragaria vesca HOM05D003777 ORTHO05D004690 1.2e-20 103.2 92 58.7
FAN12G3799 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.2e-20 103.2 92 58.7
Carub.0002s1402 Capsella rubella HOM05D003777 ORTHO05D004690 1.6e-20 102.8 89 61.8
BcaB03g15368 Brassica carinata HOM05D003777 ORTHO05D004690 8.1e-20 100.5 82 59.8
HanXRQChr04g0126141 Helianthus annuus HOM05D003777 ORTHO05D004690 8.1e-20 100.5 92 60.9
AT1G67650 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 4.0e-19 98.2 90 57.8
Solyc10g044443.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 1.5e-18 96.3 59 84.7
Os01g0889000 Oryza sativa ssp. japonica HOM05D003777 ORTHO05D004690 2.9e-17 92.0 101 50.5
Sopen01g018830 Solanum pennellii HOM05D003777 ORTHO05D004690 3.5e-15 85.1 59 76.3
AL2G26340 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 2.3e-14 82.4 87 51.7
BolC2t08468H Brassica oleracea HOM05D003777 ORTHO05D004690 2.3e-14 82.4 63 63.5
MBI11_g31858_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 3.9e-14 81.6 96 51.0
C02p23330 Brassica napus HOM05D003777 ORTHO05D004690 2.5e-13 79.0 59 66.1
Mapoly0007s0138 Marchantia polymorpha HOM05D003777 ORTHO05D004690 2.1e-12 75.9 96 40.6
CBR_g26341 Chara braunii HOM05D003777 ORTHO05D004690 1.8e-11 72.8 100 41.0
SEGI_14731 Sequoiadendron giganteum HOM05D003777 ORTHO05D004690 1.2e-10 70.1 71 47.9
Pp3c19_7700 Physcomitrium patens HOM05D003777 ORTHO05D004690 2.6e-10 68.9 95 37.9
CAN.G151.20 Capsicum annuum HOM05D000329 ORTHO05D000833 3.4e-10 68.6 48 77.1
Oeu007469.1 Olea europaea HOM05D003777 ORTHO05D004690 4.4e-10 68.2 40 82.5
SMO356G0370 Selaginella moellendorffii HOM05D003777 ORTHO05D004690 2.9e-09 65.5 95 38.9
MCO13G157 Micromonas commoda HOM05D003777 ORTHO05D004690 1.9e-08 62.8 99 36.4
Cre03.g182500 Chlamydomonas reinhardtii HOM05D003777 ORTHO05D004690 3.5e-07 58.5 87 35.6
Psat3g103880 Pisum sativum HOM05D003777 ORTHO05D004690 3.0e-06 55.5 44 65.9


User provided reference genes

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