Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G129.44 Capsicum annuum HOM05D000161 ORTHO05D005857 8.9e-53 209.9 100 100.0
Nitab4.5_0000075g0030 Nicotiana tabacum HOM05D000161 ORTHO05D005857 2.4e-21 105.5 93 61.3
SGA_v2.0_scaffold423G51450 Striga asiatica HOM05D000161 ORTHO05D005857 9.0e-21 103.6 83 67.5
Peaxi162Scf00005g00134 Petunia axillaris HOM05D000161 ORTHO05D005857 2.0e-20 102.4 93 62.4
SalBow8G0095 Salvia bowleyana HOM05D000161 ORTHO05D005857 2.0e-20 102.4 93 61.3
MSTRG.16382 Avicennia marina HOM05D000161 ORTHO05D005857 2.6e-20 102.1 93 62.4
Nitab4.5_0011255g0010 Nicotiana tabacum HOM05D000161 ORTHO05D005857 2.6e-20 102.1 93 61.3
ECA240G1954 Erigeron canadensis HOM05D000161 ORTHO05D005857 3.4e-20 101.7 93 59.1
Hma1.2p1_0166F.1_g073470 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 4.5e-20 101.3 93 61.3
Rhsim02G0171600 Rhododendron simsii HOM05D000161 ORTHO05D005857 4.5e-20 101.3 93 61.3
CSS0003887 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 5.8e-20 100.9 93 60.2
Cc09_g04450 Coffea canephora HOM05D000161 ORTHO05D005857 7.6e-20 100.5 84 63.1
Oeu008990.3 Olea europaea HOM05D000161 ORTHO05D005857 9.9e-20 100.1 93 60.2
unitig_32.g11549 Utricularia gibba HOM05D000161 ORTHO05D005857 2.2e-19 99.0 93 59.1
Migut.M02037 Erythranthe guttata HOM05D000161 ORTHO05D005857 2.9e-19 98.6 93 57.0
CAN.G465.6 Capsicum annuum HOM05D000161 ORTHO05D005857 3.8e-19 98.2 93 59.1
GSVIVG01015906001 Vitis vinifera HOM05D000161 ORTHO05D005857 3.8e-19 98.2 98 58.2
PGSC0003DMG400011264 Solanum tuberosum HOM05D000161 ORTHO05D005857 4.9e-19 97.8 93 58.1
Dinv05290 Davidia involucrata HOM05D000161 ORTHO05D005857 6.4e-19 97.4 93 60.2
vmacro11023 Vaccinium macrocarpon HOM05D000161 ORTHO05D005857 6.4e-19 97.4 93 60.2
Atru.chr8.1036 Acer truncatum HOM05D000161 ORTHO05D005857 8.4e-19 97.1 95 60.0
DCAR_024972 Daucus carota HOM05D000161 ORTHO05D005857 8.4e-19 97.1 93 59.1
Glyma.14G003200 Glycine max HOM05D000161 ORTHO05D005857 8.4e-19 97.1 85 63.5
PSO017G6394 Papaver somniferum HOM05D000161 ORTHO05D005857 8.4e-19 97.1 83 63.9
PSO478G0506 Papaver somniferum HOM05D000161 ORTHO05D005857 8.4e-19 97.1 83 63.9
CiPaw.06G002700 Carya illinoinensis HOM05D000161 ORTHO05D005857 1.1e-18 96.7 89 60.7
PSO384G2739 Papaver somniferum HOM05D000161 ORTHO05D005857 1.1e-18 96.7 83 62.7
QL04p064724 Quercus lobata HOM05D000161 ORTHO05D005857 1.1e-18 96.7 93 60.2
QL04p064793 Quercus lobata HOM05D000161 ORTHO05D005857 1.1e-18 96.7 93 60.2
Ciclev10011903m.g Citrus clementina HOM05D000161 ORTHO05D005857 1.9e-18 95.9 93 57.0
Haze_00005 Corylus avellana HOM05D000161 ORTHO05D005857 1.9e-18 95.9 93 59.1
RcHm_v2.0_Chr2g0153001 Rosa chinensis HOM05D000161 ORTHO05D005857 1.9e-18 95.9 95 60.0
Solyc10g005110.3 Solanum lycopersicum HOM05D000161 ORTHO05D005857 1.9e-18 95.9 93 57.0
Sopen10g001130 Solanum pennellii HOM05D000161 ORTHO05D005857 1.9e-18 95.9 93 57.0
Phvul.008G289900 Phaseolus vulgaris HOM05D000161 ORTHO05D005857 2.4e-18 95.5 85 63.5
Potri.011G023900 Populus trichocarpa HOM05D000161 ORTHO05D005857 2.4e-18 95.5 95 60.0
Sabra11G0014900 Salix brachista HOM05D000161 ORTHO05D005857 2.4e-18 95.5 95 60.0
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 3.2e-18 95.1 93 58.1
arahy.Tifrunner.gnm1.ann1.DVM8T3 Arachis hypogaea HOM05D000161 ORTHO05D005857 3.2e-18 95.1 83 62.7
arahy.Tifrunner.gnm1.ann1.S9CZ9A Arachis hypogaea HOM05D000161 ORTHO05D005857 3.2e-18 95.1 83 62.7
Eucgr.K01354 Eucalyptus grandis HOM05D000161 ORTHO05D005857 3.2e-18 95.1 93 59.1
LjContig00081g0009344 Lotus japonicus HOM05D000161 ORTHO05D005857 3.2e-18 95.1 93 58.1
Carub.0006s3385 Capsella rubella HOM05D000161 ORTHO05D005857 4.2e-18 94.7 93 58.1
Manes.16G000600 Manihot esculenta HOM05D000161 ORTHO05D005857 4.2e-18 94.7 93 58.1
CANSAT64G1800 Cannabis sativa HOM05D000161 ORTHO05D005857 5.4e-18 94.4 83 62.7
Ca_06491_v3 Cicer arietinum L. HOM05D000161 ORTHO05D005857 5.4e-18 94.4 93 55.9
HanXRQChr03g0090181 Helianthus annuus HOM05D000161 ORTHO05D005857 5.4e-18 94.4 96 57.3
PGR044G2307 Punica granatum HOM05D000161 ORTHO05D005857 5.4e-18 94.4 93 57.0
Sc13g0008500 Simmondsia chinensis HOM05D000161 ORTHO05D005857 5.4e-18 94.4 93 58.1
TAR624G0726 Trochodendron aralioides HOM05D000161 ORTHO05D005857 5.4e-18 94.4 93 57.0
HPP92_026322 Vanilla planifolia HOM05D000161 ORTHO05D005857 5.4e-18 94.4 93 57.0
AL6G49730 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 7.1e-18 94.0 93 59.1
Cfa016257 Carpinus fangiana HOM05D000161 ORTHO05D005857 7.1e-18 94.0 93 59.1
CDE02G0797 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 9.3e-18 93.6 94 56.4
MD17G1131200 Malus domestica HOM05D000161 ORTHO05D005857 9.3e-18 93.6 83 63.9
THA.LOC104826018 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 9.3e-18 93.6 93 57.0
TAR626G1695 Trochodendron aralioides HOM05D000161 ORTHO05D005857 9.3e-18 93.6 93 55.9
EL10Ac3g05707 Beta vulgaris HOM05D000161 ORTHO05D005857 1.2e-17 93.2 93 58.1
ClCG07G011020 Citrullus lanatus HOM05D000161 ORTHO05D005857 1.2e-17 93.2 93 58.1
FAN02G1171 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.2e-17 93.2 83 61.4
FAN09G1815 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.2e-17 93.2 83 61.4
Hma1.2p1_2159F.1_g315510 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 1.2e-17 93.2 88 56.8
MD09G1144600 Malus domestica HOM05D000161 ORTHO05D005857 1.2e-17 93.2 83 62.7
TWI60G0112 Tripterygium wilfordii HOM05D000161 ORTHO05D005857 1.2e-17 93.2 93 55.9
Ah.07g209030 Amaranthus hybridus HOM05D000161 ORTHO05D005857 1.6e-17 92.8 93 57.0
CDE05G1536 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 1.6e-17 92.8 94 55.3
Gohir.D08G060400 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.6e-17 92.8 93 57.0
Gorai.004G062500 Gossypium raimondii HOM05D000161 ORTHO05D005857 1.6e-17 92.8 93 57.0
Thecc.01G176100 Theobroma cacao HOM05D000161 ORTHO05D005857 1.6e-17 92.8 93 57.0
TPR.G35901 Trifolium pratense HOM05D000161 ORTHO05D005857 1.6e-17 92.8 93 57.0
FvH4_6g39170 Fragaria vesca HOM05D000161 ORTHO05D005857 2.1e-17 92.4 83 61.4
FAN05G2261 Fragaria x ananassa HOM05D000161 ORTHO05D005857 2.1e-17 92.4 83 61.4
FAN14G2022 Fragaria x ananassa HOM05D000161 ORTHO05D005857 2.1e-17 92.4 83 61.4
Prupe.3G183400 Prunus persica HOM05D000161 ORTHO05D005857 2.1e-17 92.4 83 62.7
Hund11764 Selenicereus undatus HOM05D000161 ORTHO05D005857 2.1e-17 92.4 93 55.9
Gohir.A07G184900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.7e-17 92.0 93 57.0
Gohir.A08G050600 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.7e-17 92.0 93 54.8
Nn7g38388 Nelumbo nucifera HOM05D000161 ORTHO05D005857 2.7e-17 92.0 93 58.1
Lj3g0003708 Lotus japonicus HOM05D000161 ORTHO05D005857 3.5e-17 91.7 84 61.9
AT4G03205 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 4.6e-17 91.3 93 55.9
Aqoxy1G01372 Aquilegia oxysepala HOM05D000161 ORTHO05D005857 6.0e-17 90.9 93 55.9
A09p68290 Brassica napus HOM05D000161 ORTHO05D005857 6.0e-17 90.9 97 55.7
C08p52750 Brassica napus HOM05D000161 ORTHO05D005857 6.0e-17 90.9 97 55.7
BolC8t52801H Brassica oleracea HOM05D000161 ORTHO05D005857 6.0e-17 90.9 97 55.7
BraA09t42165Z Brassica rapa HOM05D000161 ORTHO05D005857 6.0e-17 90.9 97 55.7
AUR62021226 Chenopodium quinoa HOM05D000161 ORTHO05D005857 6.0e-17 90.9 93 54.8
AUR62016021 Chenopodium quinoa HOM05D000161 ORTHO05D005857 7.9e-17 90.5 93 54.8
CSS0041680 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 1.0e-16 90.1 83 59.0
CARHR002850 Cardamine hirsuta HOM05D000161 ORTHO05D005857 1.0e-16 90.1 93 55.9
Gohir.D11G161800 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.0e-16 90.1 93 57.0
Gorai.007G172100 Gossypium raimondii HOM05D000161 ORTHO05D005857 1.0e-16 90.1 93 57.0
Sed0024620 Sechium edule HOM05D000161 ORTHO05D005857 1.0e-16 90.1 93 57.0
ATR0763G015 Amborella trichopoda HOM05D000161 ORTHO05D005857 1.3e-16 89.7 84 60.7
AagrBONN_evm.TU.Sc2ySwM_228.282 Anthoceros agrestis HOM05D000161 ORTHO05D005857 1.8e-16 89.4 83 56.6
AL1G12980 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 1.8e-16 89.4 93 55.9
AT1G03475 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 1.8e-16 89.4 93 55.9
BcaB02g06929 Brassica carinata HOM05D000161 ORTHO05D005857 1.8e-16 89.4 93 55.9
BcaC05g24526 Brassica carinata HOM05D000161 ORTHO05D005857 1.8e-16 89.4 93 55.9
BcaC07g42243 Brassica carinata HOM05D000161 ORTHO05D005857 1.8e-16 89.4 83 60.2
BcaC07g42252 Brassica carinata HOM05D000161 ORTHO05D005857 1.8e-16 89.4 83 60.2
A10p02010 Brassica napus HOM05D000161 ORTHO05D005857 1.8e-16 89.4 93 55.9
C05p01960 Brassica napus HOM05D000161 ORTHO05D005857 1.8e-16 89.4 93 55.9
C08p52850 Brassica napus HOM05D000161 ORTHO05D005857 1.8e-16 89.4 83 60.2
BolC5t28975H Brassica oleracea HOM05D000161 ORTHO05D005857 1.8e-16 89.4 93 55.9
BraA10t42474Z Brassica rapa HOM05D000161 ORTHO05D005857 1.8e-16 89.4 93 55.9
Carub.0001s0261 Capsella rubella HOM05D000161 ORTHO05D005857 1.8e-16 89.4 93 55.9
MELO3C016226.2 Cucumis melo HOM05D000161 ORTHO05D005857 1.8e-16 89.4 93 55.9
Thhalv10007888m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 1.8e-16 89.4 93 55.9
Sp1g02440 Schrenkiella parvula HOM05D000161 ORTHO05D005857 1.8e-16 89.4 93 55.9
Lsat_1_v5_gn_3_111240 Lactuca sativa HOM05D000161 ORTHO05D005857 2.3e-16 89.0 100 55.0
MBI18_g38427_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D005857 2.3e-16 89.0 85 58.8
Medtr5g098800 Medicago truncatula HOM05D000161 ORTHO05D005857 2.3e-16 89.0 95 55.8
CsaV3_4G007220 Cucumis sativus L. HOM05D000161 ORTHO05D005857 3.9e-16 88.2 83 57.8
Gohir.A11G154900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 3.9e-16 88.2 93 54.8
Psat2g001760 Pisum sativum HOM05D000161 ORTHO05D005857 3.9e-16 88.2 93 54.8
Duzib138G0552 Durio zibethinus HOM05D000161 ORTHO05D005857 5.1e-16 87.8 93 54.8
Gohir.D07G191700 Gossypium hirsutum HOM05D000161 ORTHO05D005857 8.7e-16 87.0 93 54.8
Lalb_Chr04g0247041 Lupinus albus HOM05D000161 ORTHO05D005857 1.1e-15 86.7 96 53.1
Lj6A29G59 Lonicera japonica HOM05D000161 ORTHO05D005857 1.5e-15 86.3 85 60.0
THA.LOC104815952 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 1.5e-15 86.3 82 59.8
Zm00001eb430670 Zea mays HOM05D000161 ORTHO05D005857 1.5e-15 86.3 88 56.8
Oeu008737.1 Olea europaea HOM05D000161 ORTHO05D005857 2.5e-15 85.5 69 68.1
Gorai.001G214600 Gossypium raimondii HOM05D000161 ORTHO05D005857 3.3e-15 85.1 93 54.8
SMO354G0013 Selaginella moellendorffii HOM05D000161 ORTHO05D005857 3.3e-15 85.1 94 51.1
Pp3c21_600 Physcomitrium patens HOM05D000161 ORTHO05D005857 4.3e-15 84.7 97 50.5
Zm00001eb071140 Zea mays HOM05D000161 ORTHO05D005857 7.4e-15 84.0 89 56.2
Cre02.g085450 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 9.6e-15 83.6 87 56.3
Pp3c22_5800 Physcomitrium patens HOM05D000161 ORTHO05D005857 1.6e-14 82.8 96 49.0
Os04g0610800 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D005857 2.1e-14 82.4 88 55.7
arahy.Tifrunner.gnm1.ann1.0Z8MR5 Arachis hypogaea HOM05D000161 ORTHO05D003903 1.1e-13 80.1 53 73.6
Mapoly0039s0053 Marchantia polymorpha HOM05D000161 ORTHO05D005857 1.8e-13 79.3 83 53.0
CBR_g45705 Chara braunii HOM05D000161 ORTHO05D005857 9.0e-13 77.0 83 53.0
arahy.Tifrunner.gnm1.ann1.0Q00UB Arachis hypogaea HOM05D000235 ORTHO05D000147 1.2e-12 76.6 53 71.7
arahy.Tifrunner.gnm1.ann1.F4AYRR Arachis hypogaea HOM05D000161 ORTHO05D005857 2.6e-12 75.5 54 68.5
MCO07G306 Micromonas commoda HOM05D000161 ORTHO05D005857 7.6e-12 73.9 93 49.5
arahy.Tifrunner.gnm1.ann1.I5BL8A Arachis hypogaea HOM05D000161 ORTHO05D005857 1.0e-11 73.6 53 67.9
PRCOL_00002331 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 1.3e-11 73.2 83 53.0
Sp6g03240 Schrenkiella parvula HOM05D000161 ORTHO05D005857 2.5e-07 58.9 61 55.7
BcaC07g42260 Brassica carinata HOM05D000161 ORTHO05D005857 4.3e-07 58.2 46 63.0
Haze_26605 Corylus avellana HOM05D000161 ORTHO05D005857 2.8e-06 55.5 60 46.7


User provided reference genes

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