Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1280.35 Capsicum annuum HOM05D005254 ORTHO05D007557 0.0e+00 2413.3 1201 100.0
Solyc06g009530.3 Solanum lycopersicum HOM05D005254 ORTHO05D007557 0.0e+00 2257.3 1202 92.3
Sopen06g004190 Solanum pennellii HOM05D005254 ORTHO05D007557 0.0e+00 2245.3 1202 91.7
Peaxi162Scf00058g02631 Petunia axillaris HOM05D005254 ORTHO05D007557 0.0e+00 2174.1 1203 88.2
Nitab4.5_0000363g0240 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 2111.3 1274 82.9
Nitab4.5_0007407g0050 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 2106.3 1383 76.9
Dinv10118 Davidia involucrata HOM05D005254 ORTHO05D007557 0.0e+00 1768.4 1199 71.1
Rhsim01G0292000 Rhododendron simsii HOM05D005254 ORTHO05D007557 0.0e+00 1758.4 1207 69.8
CSS0038291 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1758.0 1198 70.1
Actinidia25861 Actinidia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1752.6 1200 70.3
GSVIVG01028140001 Vitis vinifera HOM05D005254 ORTHO05D007557 0.0e+00 1748.4 1190 70.1
Hma1.2p1_0486F.1_g163430 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1739.9 1198 70.8
Migut.N00932 Erythranthe guttata HOM05D005254 ORTHO05D007557 0.0e+00 1723.4 1205 69.7
Cc01_g21580 Coffea canephora HOM05D005254 ORTHO05D007557 0.0e+00 1709.5 1183 69.0
CiPaw.07G119100 Carya illinoinensis HOM05D005254 ORTHO05D007557 0.0e+00 1695.2 1192 68.1
SalBow2G1139 Salvia bowleyana HOM05D005254 ORTHO05D007557 0.0e+00 1674.1 1211 67.9
MSTRG.17387 Avicennia marina HOM05D005254 ORTHO05D007557 0.0e+00 1670.6 1206 67.6
Thecc.01G315800 Theobroma cacao HOM05D005254 ORTHO05D007557 0.0e+00 1669.8 1193 67.4
TAR633G1480 Trochodendron aralioides HOM05D005254 ORTHO05D007557 0.0e+00 1668.7 1197 66.9
Duzib133G0392 Durio zibethinus HOM05D005254 ORTHO05D007557 0.0e+00 1667.9 1192 66.9
Ciclev10018561m.g Citrus clementina HOM05D005254 ORTHO05D007557 0.0e+00 1660.2 1198 67.5
Cfa005773 Carpinus fangiana HOM05D005254 ORTHO05D007557 0.0e+00 1657.1 1173 67.8
QL12p019422 Quercus lobata HOM05D005254 ORTHO05D007557 0.0e+00 1657.1 1197 67.1
COL.COLO4_23211 Corchorus olitorius HOM05D005254 ORTHO05D007557 0.0e+00 1648.6 1232 65.3
Gorai.004G144800 Gossypium raimondii HOM05D005254 ORTHO05D007557 0.0e+00 1643.2 1191 66.0
Atru.chr5.974 Acer truncatum HOM05D005254 ORTHO05D007557 0.0e+00 1641.7 1198 66.3
CANSAT25G1517 Cannabis sativa HOM05D005254 ORTHO05D007557 0.0e+00 1641.3 1181 67.0
Gohir.D08G140700 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1639.4 1191 65.8
MD17G1277500 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1638.2 1196 65.9
RcHm_v2.0_Chr3g0487381 Rosa chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1637.9 1198 65.5
Potri.002G194000 Populus trichocarpa HOM05D005254 ORTHO05D007557 0.0e+00 1637.1 1199 66.1
Manes.05G014200 Manihot esculenta HOM05D005254 ORTHO05D007557 0.0e+00 1634.4 1195 66.3
PGR083G2196 Punica granatum HOM05D005254 ORTHO05D007557 0.0e+00 1631.7 1207 65.9
Nn3g21729 Nelumbo nucifera HOM05D005254 ORTHO05D007557 0.0e+00 1629.8 1179 65.9
FvH4_1g27060 Fragaria vesca HOM05D005254 ORTHO05D007557 0.0e+00 1629.4 1198 65.5
FAN19G0333 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1627.5 1198 65.7
HanXRQChr01g0000761 Helianthus annuus HOM05D005254 ORTHO05D007557 0.0e+00 1627.5 1197 65.3
Gohir.A08G119800 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1623.6 1191 65.3
FAN26G2945 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1623.2 1198 65.3
Hund09648 Selenicereus undatus HOM05D005254 ORTHO05D007557 0.0e+00 1620.9 1194 64.4
MD09G1284300 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1608.6 1200 65.1
Eucgr.H00999 Eucalyptus grandis HOM05D005254 ORTHO05D007557 0.0e+00 1605.9 1200 65.0
TWI36G0433 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 0.0e+00 1597.4 1199 65.2
MBI18_g03638_MAGBIO Magnolia biondii HOM05D005254 ORTHO05D007557 0.0e+00 1594.7 1206 64.5
DCAR_018280 Daucus carota HOM05D005254 ORTHO05D007557 0.0e+00 1588.5 1207 63.9
Lj1g0000440 Lotus japonicus HOM05D005254 ORTHO05D007557 0.0e+00 1584.3 1206 63.4
Sc17g0000380 Simmondsia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1582.8 1195 63.3
Psat0s425g0240 Pisum sativum HOM05D005254 ORTHO05D007557 0.0e+00 1582.4 1182 63.5
arahy.Tifrunner.gnm1.ann1.AYF5PU Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1581.6 1219 63.2
Lsat_1_v5_gn_5_191360 Lactuca sativa HOM05D005254 ORTHO05D007557 0.0e+00 1580.5 1163 65.6
TPR.G4086 Trifolium pratense HOM05D005254 ORTHO05D007557 0.0e+00 1580.5 1199 62.7
AUR62043231 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1578.1 1240 61.8
ECA248G2092 Erigeron canadensis HOM05D005254 ORTHO05D007557 0.0e+00 1577.4 1187 64.4
Ah.02g112410 Amaranthus hybridus HOM05D005254 ORTHO05D007557 0.0e+00 1576.6 1206 63.4
Medtr7g109730 Medicago truncatula HOM05D005254 ORTHO05D007557 0.0e+00 1574.3 1195 63.2
Glyma.03G220700 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1573.9 1184 63.9
Glyma.19G217500 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1572.8 1184 64.1
Ca_09219_v3 Cicer arietinum L. HOM05D005254 ORTHO05D007557 0.0e+00 1572.0 1215 62.3
CsaV3_7G030070 Cucumis sativus L. HOM05D005254 ORTHO05D007557 0.0e+00 1568.9 1195 63.4
VMungo1383G0540 Vigna mungo HOM05D005254 ORTHO05D007557 0.0e+00 1567.0 1199 63.7
Lalb_Chr04g0260001 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1560.0 1205 63.4
Phvul.001G214200 Phaseolus vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1557.7 1199 63.4
Sed0001136 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1557.7 1199 62.5
Lalb_Chr15g0078051 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1553.5 1184 63.5
Aqoxy5G02683 Aquilegia oxysepala HOM05D005254 ORTHO05D007557 0.0e+00 1546.9 1209 61.6
Sed0015859 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1546.9 1194 62.8
EL10As5g23556 Beta vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1538.5 1260 60.2
PSO170G0810 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1536.5 1200 63.3
THA.LOC104802150 Tarenaya hassleriana HOM05D005254 ORTHO05D007557 0.0e+00 1536.5 1202 61.9
Sabra02G0162400 Salix brachista HOM05D005254 ORTHO05D007557 0.0e+00 1531.9 1313 58.7
arahy.Tifrunner.gnm1.ann1.72UXVZ Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1531.2 1195 62.6
ClCG09G004990 Citrullus lanatus HOM05D005254 ORTHO05D007557 0.0e+00 1528.1 1200 61.9
AL5G45120 Arabidopsis lyrata HOM05D005254 ORTHO05D007557 0.0e+00 1527.7 1181 61.7
Sp5g01040 Schrenkiella parvula HOM05D005254 ORTHO05D007557 0.0e+00 1525.0 1181 62.1
PSO357G0205 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1523.8 1200 62.8
AT3G62360 Arabidopsis thaliana HOM05D005254 ORTHO05D007557 0.0e+00 1520.0 1183 61.5
CARHR172690 Cardamine hirsuta HOM05D005254 ORTHO05D007557 0.0e+00 1518.8 1203 60.5
Thhalv10005752m.g Eutrema salsugineum HOM05D005254 ORTHO05D007557 0.0e+00 1518.8 1204 60.5
SGA_v2.0_scaffold6G03340 Striga asiatica HOM05D005254 ORTHO05D007557 0.0e+00 1514.6 1295 60.2
Carub.0005s2908 Capsella rubella HOM05D005254 ORTHO05D007557 0.0e+00 1512.3 1183 60.9
Aa31LG10G16290 Aethionema arabicum HOM05D005254 ORTHO05D007557 0.0e+00 1510.4 1199 60.6
MELO3C015914.2 Cucumis melo HOM05D005254 ORTHO05D007557 0.0e+00 1503.4 1133 63.7
A09p54350 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1490.7 1206 59.8
CDE01G0437 Ceratophyllum demersum HOM05D005254 ORTHO05D007557 0.0e+00 1486.9 1200 60.8
C08p37230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1482.2 1206 59.6
BraA09t40847Z Brassica rapa HOM05D005254 ORTHO05D007557 0.0e+00 1480.3 1210 59.3
AUR62032507 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1479.9 1256 58.6
BolC8t51301H Brassica oleracea HOM05D005254 ORTHO05D007557 0.0e+00 1478.4 1230 58.7
ATR0693G194 Amborella trichopoda HOM05D005254 ORTHO05D007557 0.0e+00 1459.9 1181 59.7
CSS0023845 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1454.5 1020 68.4
Prupe.3G010500 Prunus persica HOM05D005254 ORTHO05D007557 0.0e+00 1445.3 1018 68.2
BcaC07g40720 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1426.4 1206 58.0
Zm00001eb340350 Zea mays HOM05D005254 ORTHO05D007557 0.0e+00 1407.9 1194 57.0
Hma1.2p1_0486F.1_g163440 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1400.2 972 69.8
HPP92_011729 Vanilla planifolia HOM05D005254 ORTHO05D007557 0.0e+00 1390.9 1179 57.7
Oeu049924.2 Olea europaea HOM05D005254 ORTHO05D007557 0.0e+00 1387.9 1199 59.3
SEGI_30263 Sequoiadendron giganteum HOM05D005254 ORTHO05D007557 0.0e+00 1373.2 1205 55.7
Lj1C15G16 Lonicera japonica HOM05D005254 ORTHO05D007557 0.0e+00 1346.6 990 66.6
Haze_05067 Corylus avellana HOM05D005254 ORTHO05D007557 0.0e+00 1225.7 1192 54.0
unitig_22.g6696 Utricularia gibba HOM05D005254 ORTHO05D007557 0.0e+00 1198.7 1222 50.5
BcaC07g40722 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1181.0 1203 51.5
Pp3c14_26400 Physcomitrium patens HOM05D005254 ORTHO05D007557 0.0e+00 1179.5 1189 50.4
Mapoly0002s0320 Marchantia polymorpha HOM05D005254 ORTHO05D007557 0.0e+00 1176.8 1209 49.7
C06p28230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1146.7 1197 50.8
SMO145G0116 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 0.0e+00 1113.6 1194 46.9
FAN23G1174 Fragaria x ananassa HOM05D005254 ORTHO05D007557 2.5e-311 1072.4 835 61.2
FAN28G1559 Fragaria x ananassa HOM05D005254 ORTHO05D007557 3.1e-301 1038.9 856 61.4
vmacro15104 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 2.6e-284 982.6 716 66.5
BcaC07g42749 Brassica carinata HOM05D005254 ORTHO05D007557 1.4e-274 950.3 825 56.5
Cpa.g.sc18.77 Carica papaya HOM05D005254 ORTHO05D007557 2.2e-267 926.4 711 62.6
AagrBONN_evm.TU.Sc2ySwM_344.3074 Anthoceros agrestis HOM05D005254 ORTHO05D007557 4.0e-248 862.4 1125 42.3
CBR_g12556 Chara braunii HOM05D005254 ORTHO05D007557 2.0e-239 833.6 1104 41.8
Actinidia20982 Actinidia chinensis HOM05D005254 ORTHO05D007557 1.5e-234 817.4 1179 41.1
Oeu031896.1 Olea europaea HOM05D005254 ORTHO05D007557 9.5e-218 761.5 753 54.2
BcaC08g45197 Brassica carinata HOM05D005254 ORTHO05D007557 3.1e-216 756.5 573 63.2
Migut.O00532 Erythranthe guttata HOM05D005254 ORTHO05D007557 8.3e-214 748.4 496 72.0
CSS0046339 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 1.1e-208 731.5 563 64.3
vmacro15105 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 5.8e-191 672.5 492 66.5
FAN23G1589 Fragaria x ananassa HOM05D005254 ORTHO05D007557 1.1e-149 535.4 400 65.2
Os01g0300600 Oryza sativa ssp. japonica HOM05D005254 ORTHO05D007557 2.2e-145 521.2 412 63.6
BcaC08g45196 Brassica carinata HOM05D005254 ORTHO05D007557 1.2e-130 472.2 590 44.9
SMO145G0011 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 1.7e-121 441.8 716 37.2
Cpa.g.sc18.72 Carica papaya HOM05D005254 ORTHO05D007557 5.2e-91 340.5 262 61.1
BolC6t37993H Brassica oleracea HOM05D005254 ORTHO05D012489 6.2e-84 317.0 373 43.2
Cpa.g.sc18.74 Carica papaya HOM05D005254 ORTHO05D031611 1.3e-68 266.2 274 50.4
SalBow3G0325 Salvia bowleyana HOM05D005254 ORTHO05D007557 4.0e-67 261.2 302 46.0
Lj1A15G51 Lonicera japonica HOM05D005254 ORTHO05D007557 1.1e-64 253.1 179 67.6
SalBow2G0161 Salvia bowleyana HOM05D005254 ORTHO05D355854 3.7e-60 238.0 306 43.5
LjContig00310g0001105 Lotus japonicus HOM05D005254 ORTHO05D007557 7.9e-55 220.3 202 56.4
TWI18G0218 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 3.0e-46 191.8 140 67.1
Psat0s2295g0200 Pisum sativum HOM05D005254 ORTHO05D031611 2.0e-42 179.1 231 42.9
BolC6t37991H Brassica oleracea HOM05D005254 ORTHO05D007557 9.7e-29 133.7 135 51.9
CAN.G277.2 Capsicum annuum HOM05D005254 ORTHO05D115212 2.2e-28 132.5 207 42.5
arahy.Tifrunner.gnm1.ann1.4QV716 Arachis hypogaea HOM05D005254 ORTHO05D031611 1.3e-25 123.2 156 46.8
CAN.G317.3 Capsicum annuum HOM05D005254 ORTHO05D115878 4.4e-21 108.2 94 66.0
Psat4g159280 Pisum sativum HOM05D000515 ORTHO05D020117 1.7e-17 96.3 75 57.3
EL10Ac4g10003 Beta vulgaris HOM05D005254 ORTHO05D007557 1.1e-16 93.6 60 75.0
CAN.G2.2 Capsicum annuum HOM05D000004 ORTHO05D000002 5.2e-14 84.7 65 67.7
CBR_g12551 Chara braunii HOM05D005254 ORTHO05D131495 4.9e-12 78.2 79 50.6
SMO145G0128 Selaginella moellendorffii HOM05D005254 ORTHO05D374975 4.5e-10 71.6 128 32.0
Actinidia23681 Actinidia chinensis HOM05D005254 ORTHO05D055336 1.7e-09 69.7 47 66.0
Actinidia04350 Actinidia chinensis HOM05D002713 ORTHO05D007644 1.6e-07 63.2 86 45.3
CDE12G0049 Ceratophyllum demersum HOM05D005254 ORTHO05D130362 8.9e-06 57.4 49 53.1


User provided reference genes

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