Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G12.20 Capsicum annuum HOM05D003979 ORTHO05D015566 1.6e-42 175.6 86 100.0
Solyc12g043020.2 Solanum lycopersicum HOM05D003979 ORTHO05D005530 8.8e-33 143.3 70 97.1
Peaxi162Scf00073g02029 Petunia axillaris HOM05D003979 ORTHO05D005530 2.0e-32 142.1 70 97.1
Sopen12g022260 Solanum pennellii HOM05D003979 ORTHO05D005530 2.6e-32 141.7 70 95.7
PGSC0003DMG400019163 Solanum tuberosum HOM05D003979 ORTHO05D005530 4.4e-32 141.0 70 95.7
PGSC0003DMG400028636 Solanum tuberosum HOM05D003979 ORTHO05D015566 7.4e-32 140.2 70 95.7
Peaxi162Scf00536g00915 Petunia axillaris HOM05D003979 ORTHO05D005530 2.2e-31 138.7 70 94.3
Solyc05g053540.3 Solanum lycopersicum HOM05D003979 ORTHO05D005530 4.1e-30 134.4 70 91.4
Sopen05g032060 Solanum pennellii HOM05D003979 ORTHO05D005530 4.1e-30 134.4 70 91.4
CAN.G765.2 Capsicum annuum HOM05D003979 ORTHO05D005530 5.3e-30 134.0 70 90.0
Actinidia34623 Actinidia chinensis HOM05D003979 ORTHO05D005530 6.5e-28 127.1 70 82.9
MSTRG.24631 Avicennia marina HOM05D003979 ORTHO05D005530 8.5e-28 126.7 70 81.4
CiPaw.02G067900 Carya illinoinensis HOM05D003979 ORTHO05D005530 1.1e-27 126.3 70 80.0
TAR365G0531 Trochodendron aralioides HOM05D003979 ORTHO05D005530 1.1e-27 126.3 70 81.4
Dinv38268 Davidia involucrata HOM05D003979 ORTHO05D005530 1.5e-27 125.9 70 81.4
Cfa014896 Carpinus fangiana HOM05D003979 ORTHO05D005530 2.5e-27 125.2 70 78.6
Hund24848 Selenicereus undatus HOM05D003979 ORTHO05D005530 2.5e-27 125.2 70 80.0
Actinidia35951 Actinidia chinensis HOM05D003979 ORTHO05D005530 4.2e-27 124.4 70 81.4
Sed0009934 Sechium edule HOM05D003979 ORTHO05D005530 5.5e-27 124.0 70 81.4
Cfa020039 Carpinus fangiana HOM05D003979 ORTHO05D015566 7.2e-27 123.6 70 77.1
Haze_11573 Corylus avellana HOM05D003979 ORTHO05D005530 9.4e-27 123.2 70 74.3
QL06p023466 Quercus lobata HOM05D003979 ORTHO05D015566 9.4e-27 123.2 69 75.4
CSS0040719 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 1.2e-26 122.9 70 75.7
Cc02_g25590 Coffea canephora HOM05D003979 ORTHO05D005530 1.6e-26 122.5 70 80.0
DCAR_031519 Daucus carota HOM05D003979 ORTHO05D005530 1.6e-26 122.5 70 81.4
ECA233G3228 Erigeron canadensis HOM05D003979 ORTHO05D005530 1.6e-26 122.5 70 78.6
ClCG05G003530 Citrullus lanatus HOM05D003979 ORTHO05D005530 2.1e-26 122.1 71 74.6
CsaV3_3G011200 Cucumis sativus L. HOM05D003979 ORTHO05D005530 2.1e-26 122.1 71 76.1
HanXRQChr14g0435331 Helianthus annuus HOM05D003979 ORTHO05D005530 2.1e-26 122.1 70 80.0
Cc03_g07310 Coffea canephora HOM05D003979 ORTHO05D005530 3.6e-26 121.3 69 79.7
Migut.N00344 Erythranthe guttata HOM05D003979 ORTHO05D005530 3.6e-26 121.3 70 78.6
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 3.6e-26 121.3 69 79.7
Oeu022336.1 Olea europaea HOM05D003979 ORTHO05D005530 3.6e-26 121.3 70 78.6
Potri.003G176600 Populus trichocarpa HOM05D003979 ORTHO05D005530 3.6e-26 121.3 70 75.7
CiPaw.01G125500 Carya illinoinensis HOM05D003979 ORTHO05D005530 4.7e-26 120.9 70 75.7
AUR62020350 Chenopodium quinoa HOM05D003979 ORTHO05D005530 4.7e-26 120.9 70 78.6
MELO3C006331.2 Cucumis melo HOM05D003979 ORTHO05D005530 4.7e-26 120.9 71 76.1
GSVIVG01029073001 Vitis vinifera HOM05D003979 ORTHO05D005530 4.7e-26 120.9 70 75.7
CSS0027237 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 6.1e-26 120.6 70 74.3
AUR62015873 Chenopodium quinoa HOM05D003979 ORTHO05D005530 6.1e-26 120.6 70 78.6
Potri.001G051700 Populus trichocarpa HOM05D003979 ORTHO05D005530 6.1e-26 120.6 70 75.7
Ciclev10004565m.g Citrus clementina HOM05D003979 ORTHO05D005530 1.4e-25 119.4 70 75.7
EL10Ac4g07703 Beta vulgaris HOM05D003979 ORTHO05D005530 1.8e-25 119.0 70 75.7
HanXRQChr02g0059571 Helianthus annuus HOM05D003979 ORTHO05D005530 1.8e-25 119.0 69 78.3
Prupe.1G003100 Prunus persica HOM05D003979 ORTHO05D005530 2.3e-25 118.6 70 71.4
RcHm_v2.0_Chr1g0328531 Rosa chinensis HOM05D003979 ORTHO05D005530 2.3e-25 118.6 70 71.4
SGA_v2.0_scaffold31G12595 Striga asiatica HOM05D003979 ORTHO05D005530 2.3e-25 118.6 70 72.9
Duzib212G0229 Durio zibethinus HOM05D003979 ORTHO05D005530 3.0e-25 118.2 70 74.3
Hma1.2p1_0691F.1_g204250 Hydrangea macrophylla HOM05D003979 ORTHO05D005530 3.0e-25 118.2 70 77.1
QL07p012465 Quercus lobata HOM05D003979 ORTHO05D005530 3.0e-25 118.2 69 72.5
vmacro00507 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 3.0e-25 118.2 70 77.1
Aqoxy2G03779 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 4.0e-25 117.9 70 75.7
FvH4_7g04190 Fragaria vesca HOM05D003979 ORTHO05D005530 4.0e-25 117.9 70 71.4
FAN01G2046 Fragaria x ananassa HOM05D003979 ORTHO05D005530 4.0e-25 117.9 70 71.4
FAN06G4745 Fragaria x ananassa HOM05D003979 ORTHO05D005530 4.0e-25 117.9 70 71.4
FAN10G0585 Fragaria x ananassa HOM05D003979 ORTHO05D005530 4.0e-25 117.9 70 71.4
CDE04G1626 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 5.2e-25 117.5 70 78.6
Lsat_1_v5_gn_6_63381 Lactuca sativa HOM05D003979 ORTHO05D005530 6.7e-25 117.1 69 75.4
PSO017G0981 Papaver somniferum HOM05D003979 ORTHO05D005530 8.8e-25 116.7 70 72.9
Thecc.04G210300 Theobroma cacao HOM05D003979 ORTHO05D005530 8.8e-25 116.7 70 74.3
Manes.15G050825 Manihot esculenta HOM05D003979 ORTHO05D005530 1.2e-24 116.3 70 72.9
Nn1g03146 Nelumbo nucifera HOM05D003979 ORTHO05D005530 1.2e-24 116.3 70 75.7
Atru.chr4.1774 Acer truncatum HOM05D003979 ORTHO05D005530 1.5e-24 115.9 70 74.3
COL.COLO4_20310 Corchorus olitorius HOM05D003979 ORTHO05D005530 2.0e-24 115.5 70 74.3
Gohir.A10G121600 Gossypium hirsutum HOM05D003979 ORTHO05D005530 2.0e-24 115.5 70 72.9
PSO063G3024 Papaver somniferum HOM05D003979 ORTHO05D005530 2.0e-24 115.5 70 72.9
THA.LOC104804817 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 2.0e-24 115.5 70 74.3
unitig_899.g15534 Utricularia gibba HOM05D003979 ORTHO05D005530 2.0e-24 115.5 70 77.1
Aa31LG8G10930 Aethionema arabicum HOM05D003979 ORTHO05D005530 2.6e-24 115.2 70 74.3
Aqoxy5G02610 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 3.3e-24 114.8 70 74.3
Gorai.011G161400 Gossypium raimondii HOM05D003979 ORTHO05D005530 3.3e-24 114.8 70 72.9
Sc25g0005860 Simmondsia chinensis HOM05D003979 ORTHO05D005530 3.3e-24 114.8 70 74.3
HPP92_025762 Vanilla planifolia HOM05D003979 ORTHO05D005530 5.7e-24 114.0 70 71.4
AL3G39610 Arabidopsis lyrata HOM05D003979 ORTHO05D005530 7.5e-24 113.6 70 72.9
BcaB04g20393 Brassica carinata HOM05D003979 ORTHO05D005530 7.5e-24 113.6 70 74.3
BcaB06g26604 Brassica carinata HOM05D003979 ORTHO05D005530 7.5e-24 113.6 70 74.3
A07p08130 Brassica napus HOM05D003979 ORTHO05D005530 7.5e-24 113.6 70 74.3
C01p39410 Brassica napus HOM05D003979 ORTHO05D005530 7.5e-24 113.6 70 74.3
BolC1t03890H Brassica oleracea HOM05D003979 ORTHO05D005530 7.5e-24 113.6 70 74.3
BraA07t28596Z Brassica rapa HOM05D003979 ORTHO05D005530 7.5e-24 113.6 70 74.3
Duzib268G0146 Durio zibethinus HOM05D003979 ORTHO05D005530 7.5e-24 113.6 70 71.4
Carub.0003s2458 Capsella rubella HOM05D003979 ORTHO05D005530 9.7e-24 113.2 70 72.9
Duzib268G0265 Durio zibethinus HOM05D003979 ORTHO05D015566 9.7e-24 113.2 70 70.0
Sp3g22010 Schrenkiella parvula HOM05D003979 ORTHO05D005530 9.7e-24 113.2 70 72.9
TWI09G0393 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 9.7e-24 113.2 70 70.0
Duzib151G0303 Durio zibethinus HOM05D003979 ORTHO05D005530 1.3e-23 112.8 70 68.6
Thhalv10002451m.g Eutrema salsugineum HOM05D003979 ORTHO05D005530 1.3e-23 112.8 70 72.9
Sabra01G0036200 Salix brachista HOM05D003979 ORTHO05D005530 1.3e-23 112.8 70 71.4
AT3G23940 Arabidopsis thaliana HOM05D003979 ORTHO05D005530 1.7e-23 112.5 70 72.9
BcaC06g35668 Brassica carinata HOM05D003979 ORTHO05D005530 1.7e-23 112.5 70 74.3
C07p12270 Brassica napus HOM05D003979 ORTHO05D005530 1.7e-23 112.5 70 74.3
BolC7t41694H Brassica oleracea HOM05D003979 ORTHO05D005530 1.7e-23 112.5 70 74.3
BraA01t03222Z Brassica rapa HOM05D003979 ORTHO05D005530 1.7e-23 112.5 70 72.9
CARHR100330 Cardamine hirsuta HOM05D003979 ORTHO05D005530 1.7e-23 112.5 70 72.9
Eucgr.H02825 Eucalyptus grandis HOM05D003979 ORTHO05D015566 1.7e-23 112.5 70 70.0
AUR62010687 Chenopodium quinoa HOM05D003979 ORTHO05D005530 2.2e-23 112.1 70 67.1
Gohir.D02G031700 Gossypium hirsutum HOM05D003979 ORTHO05D005530 2.8e-23 111.7 70 71.4
Lalb_Chr18g0056121 Lupinus albus HOM05D003979 ORTHO05D005530 2.8e-23 111.7 70 71.4
PGR031G0232 Punica granatum HOM05D003979 ORTHO05D005530 2.8e-23 111.7 70 71.4
RhsimUnG0135800 Rhododendron simsii HOM05D003979 ORTHO05D005530 2.8e-23 111.7 70 71.4
RhsimUnG0180900 Rhododendron simsii HOM05D003979 ORTHO05D005530 2.8e-23 111.7 70 71.4
THA.LOC104808724 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 2.8e-23 111.7 70 71.4
A01p30940 Brassica napus HOM05D003979 ORTHO05D005530 3.7e-23 111.3 70 71.4
VMungo0540G1831 Vigna mungo HOM05D003979 ORTHO05D005530 3.7e-23 111.3 70 68.6
arahy.Tifrunner.gnm1.ann1.NX1XST Arachis hypogaea HOM05D003979 ORTHO05D005530 4.8e-23 110.9 70 68.6
arahy.Tifrunner.gnm1.ann1.ZGF32Z Arachis hypogaea HOM05D003979 ORTHO05D005530 4.8e-23 110.9 70 68.6
AUR62017196 Chenopodium quinoa HOM05D003979 ORTHO05D005530 4.8e-23 110.9 70 68.6
Gorai.005G035200 Gossypium raimondii HOM05D003979 ORTHO05D005530 4.8e-23 110.9 70 71.4
Phvul.006G152700 Phaseolus vulgaris HOM05D003979 ORTHO05D005530 6.3e-23 110.5 70 68.6
HPP92_025735 Vanilla planifolia HOM05D003979 ORTHO05D005530 1.1e-22 109.8 70 70.0
Glyma.13G207900 Glycine max HOM05D003979 ORTHO05D005530 1.8e-22 109.0 70 68.6
MD04G1003600 Malus domestica HOM05D003979 ORTHO05D005530 1.8e-22 109.0 70 65.7
CANSAT78G1204 Cannabis sativa HOM05D003979 ORTHO05D005530 7.0e-22 107.1 70 65.7
Gohir.A02G024400 Gossypium hirsutum HOM05D003979 ORTHO05D005530 7.0e-22 107.1 70 70.0
Lj6g0025731 Lotus japonicus HOM05D003979 ORTHO05D005530 7.0e-22 107.1 70 65.7
ATR0787G169 Amborella trichopoda HOM05D003979 ORTHO05D005530 9.1e-22 106.7 70 67.1
Medtr2g089340 Medicago truncatula HOM05D003979 ORTHO05D005530 2.0e-21 105.5 70 64.3
Ca_00636_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 2.7e-21 105.1 70 65.7
Ca_29705_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 2.7e-21 105.1 70 65.7
Psat1g182280 Pisum sativum HOM05D003979 ORTHO05D005530 2.7e-21 105.1 70 64.3
Zm00001eb175970 Zea mays HOM05D003979 ORTHO05D005530 1.3e-20 102.8 70 65.7
Nitab4.5_0001769g0010 Nicotiana tabacum HOM05D003979 ORTHO05D005530 2.2e-20 102.1 53 90.6
Os08g0559600 Oryza sativa ssp. japonica HOM05D003979 ORTHO05D005530 3.8e-20 101.3 70 67.1
CBR_g16971 Chara braunii HOM05D003979 ORTHO05D005530 5.0e-20 100.9 69 68.1
Zm00001eb039310 Zea mays HOM05D003979 ORTHO05D005530 1.1e-19 99.8 70 62.9
Eucgr.C02482 Eucalyptus grandis HOM05D003979 ORTHO05D015566 1.5e-19 99.4 70 62.9
Pp3c11_18700 Physcomitrium patens HOM05D003979 ORTHO05D005530 4.2e-19 97.8 69 63.8
SEGI_04002 Sequoiadendron giganteum HOM05D003979 ORTHO05D005530 4.2e-19 97.8 69 58.0
Mapoly0044s0128 Marchantia polymorpha HOM05D003979 ORTHO05D005530 2.7e-18 95.1 69 60.9
TAR624G0299 Trochodendron aralioides HOM05D003979 ORTHO05D005530 1.8e-17 92.4 61 65.6
SMO361G0245 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 2.3e-17 92.0 69 60.9
Ah.04g166150 Amaranthus hybridus HOM05D003979 ORTHO05D005530 4.0e-17 91.3 61 67.2
TAR362G1054 Trochodendron aralioides HOM05D000447 ORTHO05D000315 5.2e-17 90.9 70 60.0
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 2.0e-16 89.0 53 75.5
Cre03.g206600 Chlamydomonas reinhardtii HOM05D003979 ORTHO05D005530 3.4e-16 88.2 69 59.4
Hund11465 Selenicereus undatus HOM05D003979 ORTHO05D005530 3.4e-16 88.2 53 71.7
Cpa.g.sc59.101 Carica papaya HOM05D003979 ORTHO05D005530 1.3e-15 86.3 53 67.9
MCO11G076 Micromonas commoda HOM05D003979 ORTHO05D005530 4.1e-14 81.3 68 52.9
Cfa024863 Carpinus fangiana HOM05D003979 ORTHO05D005530 1.6e-13 79.3 68 54.4
PRCOL_00005867 Prasinoderma coloniale HOM05D003979 ORTHO05D005530 7.7e-13 77.0 57 57.9
Manes.03G150102 Manihot esculenta HOM05D003979 ORTHO05D005530 5.0e-12 74.3 53 58.5
Eucgr.C02488 Eucalyptus grandis HOM05D003979 ORTHO05D005530 8.6e-12 73.6 43 67.4
SMO361G0618 Selaginella moellendorffii HOM05D003979 ORTHO05D015566 1.2e-10 69.7 73 50.7
HPP92_025731 Vanilla planifolia HOM05D003979 ORTHO05D005530 1.4e-09 66.2 56 53.6
Cfa023757 Carpinus fangiana HOM05D003979 ORTHO05D005530 2.0e-08 62.4 68 48.5


User provided reference genes

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